New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 2497022121 (0.880)24 (0.190) 21/222 10.6 17.9% intergenic (+30/+35) ypdK/alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
?NC_000913_3_pae_tpiA = 2497026 110 (0.880)intergenic (+34/+31) ypdK/alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 136 total aligned reads displayed.

AAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGTTTTCAATCA  >  NC_000913_3_pae_tpiA/2496879‑2497169
                                                                                                                                                   |                                                                                                                                                
aaGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑gg                                                                                                                                               >  3:933592/1‑150 (MQ=255)
   tCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATAATCTAAATTCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTc                                                                                                                                            <  3:247650/150‑1 (MQ=255)
     aTTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCt                                                                                                                                          >  2:1048628/1‑150 (MQ=255)
      ttCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTg                                                                                                                                         >  2:1162489/1‑150 (MQ=255)
         aGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTCTATGGGCCTTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCCCCTGttt                                                                                                                                      >  2:1107320/1‑150 (MQ=255)
             gTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCTGAT‑GGCTCCTGtttttca                                                                                                                                  <  3:599406/150‑5 (MQ=255)
             gTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCAt                                                                                                                                  >  2:1627709/1‑150 (MQ=255)
                   gTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTga                                                                                                                            >  1:698454/1‑150 (MQ=255)
                    tAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGttt                                                                                                                                      >  1:409859/1‑139 (MQ=255)
                    tAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGttt                                                                                                                                      <  2:409859/139‑1 (MQ=255)
                            cgGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGgtgt                                                                                                                   >  3:97205/1‑150 (MQ=255)
                             ggAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGtt                                                                                                                  >  2:522611/1‑150 (MQ=255)
                               agagaTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTa                                                                                                                <  1:1253700/150‑1 (MQ=255)
                               agagaTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTa                                                                                                                <  1:522611/150‑1 (MQ=255)
                                gagaTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTAt                                                                                                               <  4:893216/150‑1 (MQ=255)
                                 agaTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTAtt                                                                                                              >  1:1748445/1‑150 (MQ=255)
                                   aTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGtttttcat                                                                                                                                 <  1:202027/129‑6 (MQ=38)
                                   aTGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGtttttcat                                                                                                                                 >  2:202027/1‑124 (MQ=38)
                                    tGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCTGAT‑GGCTCCTGtttttca                                                                                                                                  <  2:1676311/127‑5 (MQ=255)
                                    tGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGtttttca                                                                                                                                  >  1:1676311/1‑123 (MQ=255)
                                     gTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCTGAT‑GGCTCCTGttttt                                                                                                                                    <  1:609944/124‑3 (MQ=255)
                                     gTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCcgc                                                                                                          <  2:471531/150‑1 (MQ=255)
                                     gTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGttttt                                                                                                                                    >  2:609944/1‑122 (MQ=255)
                                      tAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCcgcg                                                                                                         <  1:789368/150‑1 (MQ=255)
                                           tGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCTGAT‑GGCTCCTGttt                                                                                                                                      >  2:1682404/1‑116 (MQ=255)
                                           tGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTc                                                                                                    <  4:331406/150‑1 (MQ=255)
                                           tGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTc                                                                                                    >  3:331406/1‑150 (MQ=255)
                                           tGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGttt                                                                                                                                      <  1:1682404/116‑1 (MQ=255)
                                             aaaTATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGt                                                                                                  <  1:1627709/150‑1 (MQ=255)
                                                tatTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGaa                                                                                               >  4:51611/1‑150 (MQ=255)
                                                tatTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGaa                                                                                               <  2:1214409/150‑1 (MQ=255)
                                                   ttCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGacgacg                                                                                                                       <  3:451428/123‑1 (MQ=255)
                                                        tATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTtg                                                                                       <  1:862682/150‑1 (MQ=255)
                                                           gggCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTtgctg                                                                                    >  2:239795/1‑150 (MQ=255)
                                                           gggCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTtgctg                                                                                    <  4:933592/150‑1 (MQ=255)
                                                            ggCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGa                                                                                                <  3:194336/137‑1 (MQ=255)
                                                             gCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGttt                                                                                                                                      <  1:1273148/98‑1 (MQ=38)
                                                             gCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCC‑TGATGGCTCCTGttt                                                                                                                                      >  2:1273148/1‑98 (MQ=38)
                                                                tttCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGgtgt                                                                                                                   <  3:180847/114‑1 (MQ=255)
                                                                tttCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGgtgt                                                                                                                   >  4:180847/1‑114 (MQ=255)
                                                                tttCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGc                                                                               >  2:592857/1‑150 (MQ=255)
                                                                  tCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCgg                                                                             <  1:1638592/150‑1 (MQ=255)
                                                                   cTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCggg                                                                            <  1:952384/150‑1 (MQ=255)
                                                                    ttttATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGgt                                                                           <  1:669637/150‑1 (MQ=255)
                                                                        aTGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGgtagta                                                                       >  2:1254461/1‑150 (MQ=255)
                                                                           gTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCGATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGt                                                                                                  <  2:1013508/120‑1 (MQ=255)
                                                                           gTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCGATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGt                                                                                                  >  1:1013508/1‑120 (MQ=255)
                                                                           gTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAAc                                                                    <  1:549339/150‑1 (MQ=255)
                                                                           gTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTATGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTtgct                                                                                     <  4:749594/133‑1 (MQ=255)
                                                                             cATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCAtt                                                                                                                                 <  2:90695/87‑1 (MQ=255)
                                                                             cATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCAtt                                                                                                                                 >  1:90695/1‑87 (MQ=255)
                                                                              aTCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑gg                                                                                                                                               <  1:155880/72‑1 (MQ=255)
                                                                              aTCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑gg                                                                                                                                               >  2:155880/1‑72 (MQ=255)
                                                                              aTCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGt                                                                 >  3:458612/1‑150 (MQ=255)
                                                                                      ggCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTGTGCTGCTGGCGGGTAGTAAACCGTCGGCACgg                                                         <  3:521771/150‑1 (MQ=255)
                                                                                           gTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGgta                                                                          <  2:1451/128‑1 (MQ=255)
                                                                                             aCTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCg                                                  <  3:174744/150‑1 (MQ=255)
                                                                                                tttGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCtt                                               <  2:801375/150‑1 (MQ=255)
                                                                                                tttGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCtt                                               <  1:1048628/150‑1 (MQ=255)
                                                                                                    cccTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCt                                                <  4:188158/145‑1 (MQ=255)
                                                                                                      cTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATcc                                         >  4:809447/1‑150 (MQ=255)
                                                                                                      cTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATcc                                         <  1:1207082/150‑1 (MQ=255)
                                                                                                       tgatgaTCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGt                                                                                                  >  4:485877/1‑92 (MQ=255)
                                                                                                          tgatCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCctct                                     <  1:1254461/150‑1 (MQ=255)
                                                                                                          tgatCTAAAAGCAAACGGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGCCGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCctct                                     <  3:452448/150‑1 (MQ=255)
                                                                                                           gatCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCt                                                <  1:412340/138‑1 (MQ=255)
                                                                                                           gatCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCt                                                >  2:412340/1‑138 (MQ=255)
                                                                                                            atCTAAAAGCAAACTGTGCAATGAAAAACAGGAGTTATCA‑GGCTGCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTCCGTGACTATGTTTGCTGCTGGCGGGCTGCAAACCGTCGGCGCGGAGCCTCGCCTTAATCCCTCCGa                                   <  4:712530/150‑1 (MQ=255)
                                                                                                            atCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGt                                                                                                                                        >  2:69619/1‑49 (MQ=255)
                                                                                                             tCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCg                                                               >  2:1386219/1‑121 (MQ=255)
                                                                                                             tCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCg                                                               <  1:1386219/121‑1 (MQ=255)
                                                                                                             tCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGAt                                  <  3:809447/150‑1 (MQ=255)
                                                                                                                aaaaGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGc                               >  3:412397/1‑150 (MQ=255)
                                                                                                                 aaaGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTGGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGTcc                              >  2:557232/1‑150 (MQ=255)
                                                                                                                  aaGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCt                             >  1:685673/1‑150 (MQ=255)
                                                                                                                    gCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCg                                                  <  4:851112/127‑1 (MQ=255)
                                                                                                                    gCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCg                                                  >  3:851112/1‑127 (MQ=255)
                                                                                                                     cAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGAc                          <  1:1162082/150‑1 (MQ=255)
                                                                                                                      aaaCTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTc                                                                <  4:445922/111‑1 (MQ=255)
                                                                                                                           gtgCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATAc                    >  3:805182/1‑150 (MQ=255)
                                                                                                                              cAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGACCTg                            <  2:511920/139‑1 (MQ=255)
                                                                                                                               aaTGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTc                >  2:918333/1‑150 (MQ=255)
                                                                                                                                 tGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTcgc              <  3:667242/150‑1 (MQ=255)
                                                                                                                                 tGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTcgc              >  2:714208/1‑150 (MQ=255)
                                                                                                                                  gAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGc                               <  1:1171709/132‑1 (MQ=255)
                                                                                                                                  gAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGc                               >  2:1171709/1‑132 (MQ=255)
                                                                                                                                  gAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTcgcg             >  1:1699139/1‑150 (MQ=255)
                                                                                                                                    aaaaCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCt                                                >  3:294348/1‑113 (MQ=255)
                                                                                                                                    aaaaCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCt                                                <  4:294348/113‑1 (MQ=255)
                                                                                                                                      aaCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGgta                                                                          <  2:1446109/85‑1 (MQ=255)
                                                                                                                                      aaCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGgta                                                                          >  1:1446109/1‑85 (MQ=255)
                                                                                                                                      aaCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGttt         <  1:457320/150‑1 (MQ=255)
                                                                                                                                       aCAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGtttt        >  2:1565427/1‑150 (MQ=255)
                                                                                                                                        cAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGTTTTc       <  3:1016631/150‑1 (MQ=255)
                                                                                                                                             gCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTa                                             <  1:1195092/107‑1 (MQ=255)
                                                                                                                                             gCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGTTTTCAATCa  <  2:1699139/150‑1 (MQ=255)
                                                                                                                                               cATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAAt                                           >  3:891689/1‑107 (MQ=255)
                                                                                                                                                aTCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGt                                                                                          <  1:1320056/59‑1 (MQ=255)
                                                                                                                                                aTCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCgg                                                                             <  1:712085/72‑1 (MQ=255)
                                                                                                                                                aTCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCgg                                                                             >  2:712085/1‑72 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
AAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCA‑GGCTCCTGTTTGCATTTCTGACGACGGTGTTTATTCCGCGTTTTCGTGAATATGTTTGCTGCTGGCGGGTAGTAAACCGTCGGCACGGAACATCGCTTTAATCCCTCTGATGGCCTGACGAATACGGTCGCGGTTTTCAATCA  >  NC_000913_3_pae_tpiA/2496879‑2497169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.