New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	404104 =	58 (0.730)	3 (0.040)	3/270	NT	5.1%	coding (402/1116 nt)	yaiC	diguanylate cyclase, cellulose regualtor
	?	NC_000913_3_pae_tpiA	404127 =	54 (0.690)					coding (425/1116 nt)	yaiC	diguanylate cyclase, cellulose regualtor

CAGATAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATT  >  NC_000913_3_pae_tpiA/403958‑404251                                                                                                                                                    |                                                                                                                                                     cAGATAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGAt                                                                                                                                                    <  1:1359182/149‑1 (MQ=255) cAGATAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGAt                                                                                                                                                    <  1:1262642/149‑1 (MQ=255)  aGATAGCGAGCAGGGCCGTCGTGCCTCTTAACAGGAAAATTTACAACTTATAATACGATGAAGTATTAGCGGAAATGAAGGTAGGAGTAATGTTCATAAAAGT‑CTGTCCTTCCATCGCGATGTTTATGATTATGTTTCTGAATTTGATg                                                                                                                                                   <  2:1347065/149‑1 (MQ=255)   gctAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATgg                                                                                                                                                  <  2:51202/147‑1 (MQ=255)   gATAGCGAGCAGGGCCGTCTATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATgg                                                                                                                                                  <  1:342441/149‑1 (MQ=255)   gATAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATgg                                                                                                                                                  <  1:140313/149‑1 (MQ=255)     tAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATgggg                                                                                                                                                <  1:238100/149‑1 (MQ=255)         gAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGCGTGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAg                                                                                                                                            <  1:416918/149‑1 (MQ=255)           gtatggCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAggc                                                                                                                                          <  2:905708/145‑1 (MQ=255)               ggCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGcc                                                                                                                                      >  2:475996/1‑149 (MQ=255)                 ccGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAACCGTGCTG‑CCTTCCACGGCGATGTTGATGATGATGTGTCTGAATTGGATGGGGGCAGGCCGcccc                                                                                                                                    >  2:217412/1‑149 (MQ=255)                  cGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGccccc                                                                                                                                   <  2:487969/149‑1 (MQ=255)                     cGACCCGCTTAGCCGGGAAATTTACAACTCAAAAACCGATGCAGTATGAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTc                                                                                                                                <  2:799127/149‑1 (MQ=255)                      gATCCGATTAGCCGGGAAATTTACAACTTAAAAACCGAAGAAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAACCGTGCTG‑CCTTCCACCACGATGTTGAGGATTATGTGTCTGAATTTGATGGGGGCAGGAGGCGCCCGTCt                                                                                                                               >  2:1019940/1‑149 (MQ=255)                       aTCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                              >  2:517216/1‑149 (MQ=255)                        tCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGt                                                                                                                             <  2:437451/149‑1 (MQ=255)                        tCCGCTTAGCCGGGAAATATACAACTGAAAAACGGAAGTAGAAGTGGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGGGGCCCCGGTCTGt                                                                                                                             >  2:606727/1‑149 (MQ=255)                           acaataagtggaagggaggtccaccattccagcggcgcactattgaacgacacggtaatgcccgtcagctcgagggtgacaaggcaggaaaccaccatcaacaccagacccgcgacaaacaGACGGGGGCAGGCGGCCCCCGTCTGttt                                                                                                                           >  2:1194603‑M1/122‑149 (MQ=255)                            cTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGt                                                                                                                         >  1:1273988/1‑149 (MQ=255)                             ttAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTCAGCTTATGGGTCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTGTGTc                                                                                                                        >  1:1266023/1‑149 (MQ=255)                                 gcGGGAAATTTACAACCTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGTCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCgg                                                                                                                    <  2:97722/148‑1 (MQ=255)                                       aaTTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑GCTTTCACCGCGGTGTTGGTGATCAGGTGTGTGAATTTGATGGGGGGGGGCGGCCCCCGGCGGTTGGTCGCGGGCCTgg                                                                                                              >  1:436605/1‑149 (MQ=255)                                        aTTTACAACTTAAAAACCGATGCAGTATGAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgt                                                                                                             <  1:1089230/149‑1 (MQ=255)                                         tttACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgtg                                                                                                            >  2:1066746/1‑149 (MQ=255)                                          ttACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgtgt                                                                                                           >  1:157845/1‑149 (MQ=255)                                             cAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGa                                                                                                        <  2:289526/149‑1 (MQ=255)                                               aCTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtg                                                                                                      <  1:475996/149‑1 (MQ=255)                                                 ttAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAttgt                                                                                                    >  2:1245611/1‑149 (MQ=255)                                                 ttAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggt                                                                                                    >  2:886886/1‑149 (MQ=255)                                                  tcaaaaCCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggtg                                                                                                   <  1:872614/147‑1 (MQ=255)                                                  tAAAAACCGGTGCAGGATGAGCGGGAATGCGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggtg                                                                                                   <  1:30537/149‑1 (MQ=255)                                                        ccGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTcc                                                                                             <  2:20080/149‑1 (MQ=255)                                                           tggCAGTATTGGCGGGTAGGTGTGTAGGTGTGATGCGCGTATCTGTGCTG‑CCGTCCTGCGCGATGTTTGTGATTATGTGTCTGAGTTTGATGGTGGCAGGCGGCCCCCCTCTGTTTGGCGCGGGTCTGGTGTTGATGGTTGTTTCCTGc                                                                                          <  2:1239819/147‑1 (MQ=255)                                                             gCAGTATTAGCGGGAATGTGGGGAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCt                                                                                        <  1:419559/149‑1 (MQ=255)                                                              cAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCtt                                                                                       <  1:845688/149‑1 (MQ=255)                                                                gatttAGTGGTAATGGGGGTAGCCGTATGCGGCGTCAGCTTGTTG‑TCTTCTACCGCGATGTTGATGATTCTGTGTCTGAATTTTATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGt                                                                                     <  2:797503/146‑1 (MQ=255)                                                                 tATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTc                                                                                    >  1:454570/1‑149 (MQ=255)                                                                          gAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAg                                                                           <  1:1216668/149‑1 (MQ=255)                                                                           aaTGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGc                                                                          <  1:753891/149‑1 (MQ=255)                                                                             tgtgGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGCTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGGGGACCCCGTCTGTTTGTCGCGGGTCTGATGTTGAGGGTGGTTTGCTGCCTTGTCCCCCTCGAGccg                                                                        >  2:692533/1‑147 (MQ=255)                                                                               tgGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGAc                                                                      >  1:1249626/1‑149 (MQ=255)                                                                               tgGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGAc                                                                      >  1:236197/1‑149 (MQ=255)                                                                                 tgTAGTCGCAATGGGGGTGAGTGTCCTG‑CTTTCCAGCGGGATGTTGATGATTATGGGTCTGAAGTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACgg                                                                    <  2:1136412/148‑1 (MQ=255)                                                                                   tAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGc                                                                  >  1:342096/1‑149 (MQ=255)                                                                                          aaTGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACCGGCCTTACCg                                                           >  2:784262/1‑149 (MQ=255)                                                                                           aTGTGCGTAAACGCGCCG‑CCTTCCACCGCGATGTGGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTTGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCgt                                                          <  2:290870/149‑1 (MQ=255)                                                                                                  tAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑Tc                                                  >  2:896542/1‑149 (MQ=255)                                                                                                    aaCGTGCTG‑CCGTCCACGGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCaa                                                <  2:1309933/149‑1 (MQ=255)                                                                                                      ggTGCTG‑CTTTGCGCCTCGATGTGGATTAGTATGTGTCGGAATTTGTTGGGGGCAGGCGTCCCCCTTCTGTTGGTCGCGTTTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCCCCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATa                                              <  2:270942/148‑1 (MQ=255)                                                                                                       gTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAg                                             <  1:1420646/149‑1 (MQ=255)                                                                                                       gTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGACGT‑TCAATAg                                             >  1:444779/1‑149 (MQ=255)                                                                                                                ttCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCGTTACCGTGTCGG‑TCAATAGTGcgccgc                                     >  2:557973/1‑149 (MQ=255)                                                                                                                  gaaaccaccatcaacaccagacccgcgacaaacaGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                              <  1:1156016‑M1/25‑1 (MQ=255)                                                                                                                  gaaaccaccatcaacaccagacccgcgacaaacaGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                              >  2:1156016‑M1/35‑59 (MQ=255)                                                                                                                         gATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCTTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggt                            >  1:225684/1‑149 (MQ=255)                                                                                                                          aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggtg                           <  1:1272513/149‑1 (MQ=255)                                                                                                                          aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggtg                           <  2:588823/149‑1 (MQ=255)                                                                                                                          aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCA‑TAGAGAGACCTGCCAATAGTGCGCCGCTGGAAtggtg                           <  2:1011163/149‑1 (MQ=255)                                                                                                                            gTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGc                         >  1:531444/1‑149 (MQ=255)                                                                                                                             ttGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGct                        >  2:1230390/1‑149 (MQ=255)                                                                                                                             ttGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGct                        >  2:1230307/1‑149 (MQ=255)                                                                                                                                 tgatTATGTGTCTGAATTTGATGGGGGCAAGCGGCCCACGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATANTGCGCCGCTGGAATGGTGGCTCTcc                    >  1:936058/1‑149 (MQ=255)                                                                                                                                        gtgtCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCa             <  1:517216/149‑1 (MQ=255)                                                                                                                                           tCTGAATTTGATGGGGGCAGGCGGCCCCCGGCTGGTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCatta          <  2:905203/149‑1 (MQ=255)                                                                                                                                           tCTGAATTTGATGGGGGCAGGCGGCCACCGTCTGTTTGTCGCGGGGCTGGTGTTGAGGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCatta          <  2:1362168/149‑1 (MQ=255)                                                                                                                                             tGAATTTGATGGAGGCAGGCGGCCCTCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCattatt        <  1:1245611/149‑1 (MQ=255)                                                                                                                                             tGAATTGGATGGGGGCAGGCGGCCGCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCattatt        <  2:52226/149‑1 (MQ=255)                                                                                                                                                 tttGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCCCCCTTCCCATTATTGTCa    >  2:75494/1‑149 (MQ=255)                                                                                                                                                  ttGATGGGGGCAGGCGGCCTGCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCAt   <  2:936125/149‑1 (MQ=255)                                                                                                                                                   tGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCAtt  >  1:534676/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CAGATAGCGAGCAGGGCCGTCGATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTG‑CCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATT  >  NC_000913_3_pae_tpiA/403958‑404251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.