BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4162055 =	NA (NA)	28 (0.280)	22/238	7.5	NA	intergenic (+9/+31)	yijD/trmA	DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase
*	?	NC_000913_3_pae_tpiA	4162081 =	NA (NA)	28 (0.280)	22/238	7.5	NA	intergenic (+35/+5)	yijD/trmA	DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 179 total aligned reads displayed.

GCGTACTGCTGTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCTTGCATAACG  >  NC_000913_3_pae_tpiA/4161907‑4162204

gCGTACTGCTGTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGtattat                                                                                                                                                       <  2:1178663/150‑1 (MQ=255)

      tgctgTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCgca                                                                                                                                                 <  1:1090077/150‑3 (MQ=255)

        ctgTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGCTg                                                                                                                                               >  2:296736/1‑150 (MQ=255)

          gTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCt                                                                                                                                             <  2:533658/150‑1 (MQ=255)

             cAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGgc                                                                                                                                          <  3:20841/150‑1 (MQ=255)

              aGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGTGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTAAGCCGGATGCTGgc‑g                                                                                                                                        >  1:505303/1‑150 (MQ=255)

                cACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCa                                                                                                                                      >  1:400553/1‑150 (MQ=255)

                  cGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATc                                                                                                                                    <  3:561252/150‑1 (MQ=255)

                           gTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATggg                                                                                                                           >  1:1210737/1‑150 (MQ=255)

                              cGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTCAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCACGGGatt                                                                                                                        >  4:5177/1‑150 (MQ=255)

                                gAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGt                                                                                                                          <  1:893196/146‑1 (MQ=255)

                                gAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGt                                                                                                                          >  2:893196/1‑146 (MQ=255)

                                 aaTATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTAc                                                                                                                     >  2:388604/1‑150 (MQ=255)

                                  atatCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACt                                                                                                                    <  3:5177/150‑1 (MQ=255)

                                      ccGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTcgc                                                                                                                <  3:749518/150‑1 (MQ=255)

                                      ccGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTcgc                                                                                                                >  1:600099/1‑150 (MQ=255)

                                             tCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGt                                                                                                         >  3:14924/1‑150 (MQ=255)

                                             tCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGt                                                                                                         >  2:100433/1‑150 (MQ=255)

                                             tCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGt                                                                                                         >  4:322719/1‑150 (MQ=255)

                                              cGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTa                                                                                                        <  1:785382/150‑1 (MQ=255)

                                              cGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTa                                                                                                        <  3:762876/150‑1 (MQ=255)

                                                   ctAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATAcg                                                                                                   >  4:215725/1‑150 (MQ=255)

                                                   ctAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCGCCA‑GCATCCGGCAtaatacc                                                                                                                        >  4:410088/1‑123 (MQ=38)

                                                   ctAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGC‑GCCAGCATCCGGCAtaatacc                                                                                                                        <  3:410088/129‑7 (MQ=38)

                                                     aaCTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATAcgcc                                                                                                 <  2:839927/150‑1 (MQ=255)

                                                      aCTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATAcgccg                                                                                                >  4:313939/1‑150 (MQ=255)

                                                      aCTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATAcgccg                                                                                                >  4:641485/1‑150 (MQ=255)

                                                      aCTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATAcgccg                                                                                                >  4:614636/1‑150 (MQ=255)

                                                       cttcttCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACtt                                                                                                                   <  1:627242/130‑1 (MQ=255)

                                                        ttcttcCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGcc                                                                                                                                                    <  1:941498/97‑1 (MQ=255)

                                                        ttcttcCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCa                                                                                              >  3:532345/1‑150 (MQ=255)

                                                              ccGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCat                                                                                        >  2:87543/1‑150 (MQ=255)

                                                               cGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGt                                                                                                             >  1:856385/1‑128 (MQ=255)

                                                               cGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCata                                                                                       >  2:423491/1‑150 (MQ=255)

                                                               cGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCata                                                                                       <  4:589028/150‑1 (MQ=255)

                                                                ggCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCatat                                                                                      <  3:641485/150‑1 (MQ=255)

                                                                    gTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTc                                                                                           >  3:71828/1‑141 (MQ=255)

                                                                     tgctctCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGc                                                                                 <  3:257220/148‑1 (MQ=255)

                                                                     tACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGc                                                                                 <  2:1124135/150‑1 (MQ=255)

                                                                      aCTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCg                                                                                >  2:49184/1‑150 (MQ=255)

                                                                       ctctCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCgt                                                                               <  4:207581/150‑1 (MQ=255)

                                                                        tctcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAAt                                                                                                      >  2:640920/1‑126 (MQ=255)

                                                                        tctcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTcc                                                                                          <  2:189207/138‑1 (MQ=255)

                                                                        tctcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCgtg                                                                              >  4:357499/1‑150 (MQ=255)

                                                                        tctcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCgtg                                                                              >  4:716692/1‑150 (MQ=255)

                                                                          tcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCa                                                                                                           >  4:724510/1‑119 (MQ=255)

                                                                          tcCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTa                                                                            >  2:1188691/1‑150 (MQ=255)

                                                                          tcCGTAATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCAGCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTa                                                                            <  4:350087/150‑1 (MQ=255)

                                                                           ccGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAg                                                                           <  1:1179977/150‑1 (MQ=255)

                                                                             gTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAggg                                                                         >  2:1091220/1‑150 (MQ=255)

                                                                                 ttATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAAc                                                                     <  3:355643/150‑1 (MQ=255)

                                                                                 ttATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAAc                                                                     <  1:49598/150‑1 (MQ=255)

                                                                                  tATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCg                                                                                                                                  <  2:883972/88‑1 (MQ=255)

                                                                                      gtgtTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGgc                                                                                                                                          <  1:9187/77‑1 (MQ=255)

                                                                                      gtgtTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGgc                                                                                                                                          >  2:9187/1‑77 (MQ=255)

                                                                                      gtgtTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATc                                                                <  3:433101/150‑1 (MQ=255)

                                                                                      gtgtTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATc                                                                >  4:22878/1‑150 (MQ=255)

                                                                                      gtgtTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATc                                                                >  4:96733/1‑150 (MQ=255)

                                                                                           cTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGc                                                                                 >  1:891597/1‑128 (MQ=255)

                                                                                                ttGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGcc                                                      <  3:313939/150‑1 (MQ=255)

                                                                                                 tGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCa                                                     <  3:96733/150‑1 (MQ=255)

                                                                                                     gcgAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACg                                                 >  1:663936/1‑150 (MQ=255)

                                                                                                        aaGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTc                                              <  2:600099/150‑1 (MQ=255)

                                                                                                           aTGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGAc                                           <  3:614636/150‑1 (MQ=255)

                                                                                                             gCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGc                                                                                 <  1:153666/110‑1 (MQ=255)

                                                                                                              cGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCtt                                        <  1:880611/150‑1 (MQ=255)

                                                                                                               gTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTtg                                       >  3:802219/1‑150 (MQ=255)

                                                                                                               gTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTtg                                       >  1:530806/1‑150 (MQ=255)

                                                                                                                   ccGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCg                                   >  2:922711/1‑150 (MQ=255)

                                                                                                                    cGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAAc                                                            <  2:445739/124‑1 (MQ=255)

                                                                                                                    cGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGt                                  >  4:486811/1‑150 (MQ=255)

                                                                                                                      tAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCa                                                                                                           >  3:56978/1‑75 (MQ=255)

                                                                                                                       aaGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGTTCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTg                               <  3:266198/150‑1 (MQ=255)

                                                                                                                           aGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCa                                                                                                           <  2:55073/70‑1 (MQ=255)

                                                                                                                           aGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCa                                                     <  1:1022216/124‑1 (MQ=255)

                                                                                                                           aGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCa                                                     >  2:1022216/1‑124 (MQ=255)

                                                                                                                           aGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCtt                           >  2:691314/1‑150 (MQ=255)

                                                                                                                             gAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGtttt                                                                                                                       >  4:568290/1‑56 (MQ=255)

                                                                                                                             gAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAAc                                                            <  3:66272/115‑1 (MQ=255)

                                                                                                                             gAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAAc                                                            >  4:66272/1‑115 (MQ=255)

                                                                                                                              aaGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAAt                        <  1:423491/150‑1 (MQ=255)

                                                                                                                                gTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGt                      <  1:100433/150‑1 (MQ=255)

                                                                                                                                  tGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGAt                                                                 >  3:336109/1‑105 (MQ=255)

                                                                                                                                  tGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGAt                                                                 <  4:336109/105‑1 (MQ=255)

                                                                                                                                   gCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGACTTAATGTTTc                   <  3:486811/150‑1 (MQ=255)

                                                                                                                                    cTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTcc                  >  1:525595/1‑150 (MQ=255)

                                                                                                                                    cTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTcc                  <  2:974575/150‑1 (MQ=255)

                                                                                                                                     tGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGt                                                                                                             <  2:1181008/58‑1 (MQ=255)

                                                                                                                                     tGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGt                                                                                                             >  1:1181008/1‑58 (MQ=255)

                                                                                                                                     tGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCa                 <  4:532345/150‑1 (MQ=255)

                                                                                                                                      gAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAg                >  1:1160112/1‑150 (MQ=255)

                                                                                                                                            tCGGTATTATGCGGGATGCTGGC‑GCATCCGGCATGGGTTTTGCTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGATCTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCtt          <  2:1250995/150‑1 (MQ=255)

                                                                                                                                            tCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCtt          <  2:1160112/150‑1 (MQ=255)

                                                                                                                                              ggTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCTTGc        <  3:322719/150‑1 (MQ=255)

                                                                                                                                               gTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTc                                              <  2:839702/111‑1 (MQ=255)

                                                                                                                                               gTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTc                                              >  1:839702/1‑111 (MQ=255)

                                                                                                                                                  ttatGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCTTCTGGCTTAATGTTTCCAGATTCTTGCATaa    <  1:306446/150‑1 (MQ=255)

                                                                                                                                                  ttatGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCTTGCATaa    <  1:49184/150‑1 (MQ=255)

                                                                                                                                                  ccatGCCGGATGCGCCA‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAg                                                                           <  4:173453/77‑1 (MQ=37)

                                                                                                                                                   tatGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCTTGCATAAc   >  3:69404/1‑150 (MQ=255)

GCGTACTGCTGTACAGCACGGTAGTTCGTGCGGAATATCCGGATATCGGCTCTAACTTCTTCCCGGCAGTACTCTCCGTCATTATGGTGTTCTGGATTGGCGCGAAGATGCGTAACCGTAAGCAGGAAGTTGCTGAGTAATCGGTATTATGCCGGATGCTGGC‑GCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACAGAGCCAGACGTTCGACCTTGTGCGTCTGGCTTAATGTTTCCAGATTCTTGCATAACG  >  NC_000913_3_pae_tpiA/4161907‑4162204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.