New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 805981	NA (NA)	5 (0.120)	5/268	5.4	NA	noncoding (178/178 nt)	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_pae_tpiA	2347190 =	NA (NA)					noncoding (31/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGTATTACCC  >  NC_000913_3_pae_tpiA/805833‑806127                                                                                                                                                     |                                                                                                                                                    gACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTCGCGCATCTTATCCGACCTACAAATCGCATCGAACCTTCGGCCGCATAAGGCCTTCACCCCGCATCCGGc                                                                                                                                                     >  2:423979/1‑149 (MQ=37)      aCGTATCGGCTCGGATCTGTAGGCCAGATAAGGCATTTTCGGAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATa                                                                                                                                                <  1:370808/149‑1 (MQ=25)      aCGAATCGCAGCGAAGCTTTGGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGTGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGTCGGATAAGGTGTTTACGTCGCATTCGGCAAATa                                                                                                                                                <  2:106566/149‑1 (MQ=25)       cGAATCGCAGCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCCCATCGAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcctacgg                                                                                                                                               <  2:460376/149‑7 (MQ=25)         agtCGCCTAGAAACTGTAGGCAAGATAAGGCATGTTCGAAGCATCCGGCACTTATTGACGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGtt                                                                                                                                             <  2:528994/147‑1 (MQ=21)            ctcactgAATCTGTAGGTAATCTAAGGCAGTTTTGCAGCCTCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACTAATCGCATCGATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAAt                                                                                                                                          <  1:242363/143‑1 (MQ=18)                  gAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGctct                                                                                                                                    >  1:709832/1‑149 (MQ=255)                  gAATCTGGAGGCCAGATTCGGAAGTTTCGTAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCAGCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGctct                                                                                                                                    <  2:708162/149‑1 (MQ=25)                    aTCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTa                                                                                                                                  <  2:309400/149‑1 (MQ=255)                     tCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTAc                                                                                                                                 <  1:626199/149‑1 (MQ=255)                     tCTGTAGGCCAGATAAGGCAGTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTAc                                                                                                                                 <  1:379249/149‑1 (MQ=255)                          aGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTActtctt                                                                                                                            <  2:568293/149‑1 (MQ=255)                           ggCCAGATCATGCATTTTCGCAGCATCCGGAACTTTTTGTCGGATGCGATGCTTGCGCATCGTATCCGACCTACAAATCGCATCGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACttcttc                                                                                                                           <  1:135329/149‑1 (MQ=37)                           ggCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGCTAAGGCGTTTACGCAGCATCCGGCAGATCGTTAATTGCTCTTACttcttc                                                                                                                           >  2:613998/1‑149 (MQ=255)                              cAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGcc                                                                                                                        >  2:88530/1‑149 (MQ=255)                              cAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGcc                                                                                                                        >  1:771947/1‑149 (MQ=255)                                     ggCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCaa                                                                                                                 >  1:320922/1‑149 (MQ=255)                                     ggCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCaa                                                                                                                 >  1:236282/1‑149 (MQ=255)                                        aTTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGGTCTTACTTCTTCGCCTCTGCAACCa                                                                                                              <  1:706210/149‑1 (MQ=255)                                        aTTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCa                                                                                                              >  1:650181/1‑149 (MQ=255)                                         ttttCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGTATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAAGTGCTCTTACTTCTTCGCCTCTGCAAccca                                                                                                             >  1:320072/1‑147 (MQ=255)                                           ttCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACtt                                                                                                           <  1:278732/149‑1 (MQ=255)                                           ttCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACtt                                                                                                           <  2:236282/149‑1 (MQ=255)                                            tCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGCCCTACAAATCGCATCGAACCGTAGGCCGGAT‑AGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTta                                                                                                         <  1:554298/149‑1 (MQ=255)                                              gcagcaTCCGGCACTTATTGTCGGATGCGCGGCTTGCGTATCTTATCCGTCCTACAAATCGCATCGAACCGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTTCTTCTTCGCCTCTGCAACCACTTtac                                                                                                        <  2:334771/149‑1 (MQ=37)                                              gcagcaTCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTtac                                                                                                        >  2:241492/1‑149 (MQ=255)                                                agcaTCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTtacta                                                                                                      <  1:88530/149‑1 (MQ=255)                                                            ttATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCgg                                                                                          >  1:679321/1‑149 (MQ=255)                                                                      atgcgatgcTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCAACGCCGCGGTT‑ATTGTAtt                                                                               <  2:657880/149‑1 (MQ=255)                                                                      atgcgatgcTCGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAAATAGTTAATTGCTCTTACTTCTTCCCCTCTGCAACCACTTTACTACCGACGCCGCGGTT‑ATTGTAtt                                                                               <  2:657901/149‑1 (MQ=255)                                                                          gatgcTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTCTTcccc                                                                           >  1:217110/1‑148 (MQ=255)                                                                          gatgcTAGCGCAGTGTATCTGACGTACAAAGCGTATGGAACCGTAGGGCGGATAAGGTGTTTACGCCGGATCCGGCAAATCGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCCCTTTACTACCCACGCCGCGGTT‑ATTGTATTCCca                                                                           <  2:195543/149‑1 (MQ=255)                                                                             gcTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACAt                                                                        <  1:482140/149‑1 (MQ=255)                                                                                 gctcATCTTATCCGACCTACAAAGCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCgg                                                                    <  2:320072/146‑1 (MQ=255)                                                                                   gcATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGtt                                                                  <  1:290956/149‑1 (MQ=255)                                                                                    cATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTg                                                                 >  1:436810/1‑149 (MQ=255)                                                                                      tCTTATCCGACCTACAAATCGTATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGta                                                               <  2:452811/149‑1 (MQ=255)                                                                                      tCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCCCTTTACTCCCCCCGCCGCGGTT‑ATTGGATTCCCACATGCGGTGGta                                                               >  1:251803/1‑149 (MQ=39)                                                                                       cTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑CTTGTATTCCCACATGCGGCTGtag                                                              >  2:449270/1‑149 (MQ=255)                                                                                             cGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAgtg                                                        >  2:147626/1‑149 (MQ=255)                                                                                              gACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAgtgt                                                       >  1:55700/1‑149 (MQ=255)                                                                                                      aaTCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGa                                               <  1:147626/149‑1 (MQ=255)                                                                                                        tCGCCTCGAACCGTAGGCCGGATGAGGCGTTTACGCCGCATCCGGGAAATAGTTAATTGCTCGTACTTCTTCGCCTCTACAACCACTCTACAACACACGCCGCGTTT‑ATTCTATTCCCAGATGCGGTTGTAGTTAGTGTCATTCAGAtt                                             <  1:658634/149‑1 (MQ=38)                                                                                                        tCGCATCGACTCGTAGGCGGGAGAAGGTGTTGAGGCCGCATTCGGCAAATAGTGAATTGTTCGTACTTCTTCGCCTCGGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGAtt                                             <  2:152655/149‑1 (MQ=255)                                                                                                        tCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTA‑CAACGGTACTTTTCGTGGTGTTAACACATGCGGGTGTGGTTAGTGTCATTCAGAtt                                             >  1:178377/1‑149 (MQ=21)                                                                                                            aTCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTgcgc                                         >  1:617539/1‑149 (MQ=255)                                                                                                                   cGTAGGGTGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACTTGAGGCTTTAGGTAGTGTCATTCAGATTGCGCTGTAttt                                  <  2:168964/149‑1 (MQ=255)                                                                                                                          cGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGtt                           >  1:390122/1‑149 (MQ=255)                                                                                                                            gATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTat                         <  1:241492/149‑1 (MQ=255)                                                                                                                                 ggCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCt                    >  1:300072/1‑149 (MQ=255)                                                                                                                                  gCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTa                   <  2:55700/149‑1 (MQ=255)                                                                                                                                                tCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGTATTa     <  2:390122/149‑1 (MQ=255)                                                                                                                                                  cGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTGAGTTTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGTATTAcc   >  2:666982/1‑149 (MQ=255)                                                                                                                                                  cGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGt         >  1:404478/1‑143 (MQ=255)                                                                                                                                                  cGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGt         <  2:404478/143‑1 (MQ=255)                                                                                                                                                   ggCAAATACTTAATTGCTCTTACTCCTTCGCCTCTGCAACCCCTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGTATTAccc  <  1:1443/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAATAGTTAATTGCTCTTACTTCTTCGCCTCTGCAACCACTTTACTACCCACGCCGCGGTT‑ATTGTATTCCCACATGCGGTTGTAGTTAGTGTCATTCAGATTGCGCTGTATTTCGTCGTTATCATCTACGCTGCCGGTATTACCC  >  NC_000913_3_pae_tpiA/805833‑806127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.