New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4284971 =	45 (1.020)	5 (0.120)	5/278	5.6	10.1%	coding (159/315 nt)	yjcH	DUF485 family inner membrane protein
	?	NC_000913_3_pae_tpiA	4284993 =	45 (1.040)					coding (137/315 nt)	yjcH	DUF485 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATTCATCACAGAT  >  NC_000913_3_pae_tpiA/4284856‑4285136                                                                                                                                          |                                                                                                                                                 ggTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGACGGCGATCAGt                                                                                                                                       >  1:676815/1‑149 (MQ=255) ggTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGt                                                                                                                                       <  1:49403/149‑1 (MQ=255)       aTTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGaa                                                                                                                                                 <  2:77889/133‑1 (MQ=255)       aTTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGaa                                                                                                                                                 >  1:77889/1‑133 (MQ=255)                gtgcccgtcAGATGCAGATACCGGTTAGAACAAAGGAGATCACCATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                                       <  2:193996/147‑1 (MQ=255)                    ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGAt                                                                                                                                           <  1:314176/126‑1 (MQ=255)                    ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGAt                                                                                                                                           >  2:314176/1‑126 (MQ=255)                    ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                                       <  2:703425/145‑1 (MQ=255)                    ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                                       >  1:703425/1‑145 (MQ=255)                      gccAGATGTAGATACCGGTGCGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACGGCGTGTGACGCTGGTGCTCGGATTCAGCGGCTTGCCCAGCCAGCCGGGCGCGAAGCCGATGAGTAAAATAA‑AGCCAATGTAAACt                                                                                                                 >  2:335658/1‑149 (MQ=255)                         aGATGTAGATGCCGGTGAGAACAAAGGAGATCACAATAACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGAGTTAGGATTCAGAGCCGTGCCCAGCGAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCAGATAGAAACTAcc                                                                                                              >  2:678437/1‑149 (MQ=255)                           aTGTAGATATGGGGGGGGATAAGGGAGATTACAATCATTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCCGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGTCGATCAGTAAAATAA‑AGCCGATTTAAACTGCCAg                                                                                                            <  2:332490/149‑1 (MQ=255)                             gTAGATACCGGTGAGAACAAAGGAGATCACAATCACCCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCa                                                                                                          <  2:479726/149‑1 (MQ=255)                                      ggagagaACAAAGGCGATCACAATCACTCCAACACCAATTGGAATATCGCGTGTGACGCTGGTGGTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCAATATAACATGCCAGCATAATAATCg                                                                                                 >  2:769685/4‑149 (MQ=255)                                       gTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGa                                                                                                >  1:754247/1‑149 (MQ=255)                                            aaCAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGa                                                                                           <  2:754247/149‑1 (MQ=255)                                              cAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAACGCGAACAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtg                                                                                         >  1:414266/1‑149 (MQ=255)                                               caaGGAAATCACAATCACTCCAACCACAATTGGAATACCGCGTGTTACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAATGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtgg                                                                                        <  2:464223/148‑1 (MQ=255)                                               aaaGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtgg                                                                                        >  1:518957/1‑149 (MQ=255)                                                aaGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCGGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtggt                                                                                       <  1:80486/149‑1 (MQ=255)                                                   gagaTCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGc                                                                                    >  1:537699/1‑149 (MQ=255)                                                            aTCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTg                                                                           <  2:524906/149‑1 (MQ=255)                                                             tCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGc                                                                          >  2:452073/1‑149 (MQ=255)                                                                 tCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATCAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGtt                                                                      >  1:536957/1‑149 (MQ=255)                                                                 tCCAACACCAATTGGAATACCGCGGGTGACGCTGGGGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGtt                                                                      >  1:425410/1‑149 (MQ=255)                                                                        caaaTTGGAAGACCGCGTGTGGCGCTGGGTTTCGGATGCAACTGGGTGCTCGGGCAGTCGGGCGCGGAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAc                                                               <  2:278796/147‑1 (MQ=255)                                                                          aaTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACtc                                                             >  2:697166/1‑148 (MQ=255)                                                                           aTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAACAATCAAT‑GAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACAGTTGCCGTTTTTCGACTaa                                                            >  1:181833/1‑149 (MQ=255)                                                                           aTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCCAACCGTTGCCGTTTTTCGACTaa                                                            >  2:149091/1‑149 (MQ=255)                                                                               gAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATaa‑a                                                                                                                              <  1:759414/79‑1 (MQ=255)                                                                               gAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATaa‑a                                                                                                                              >  2:759414/1‑79 (MQ=255)                                                                                   aCCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTGAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACGAACTCCCTGa                                                    >  1:755102/1‑149 (MQ=255)                                                                                   aCCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGa                                                    >  2:600722/1‑149 (MQ=255)                                                                                     cgcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGAc                                                                                               >  2:750591/1‑104 (MQ=255)                                                                                     cgcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGAc                                                                                               <  1:750591/104‑1 (MQ=255)                                                                                      gcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAAt                                                 <  2:537699/149‑1 (MQ=255)                                                                                                     gtTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTa                                  >  1:171719/1‑149 (MQ=255)                                                                                                            ttCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTg                           >  1:356105/1‑149 (MQ=255)                                                                                                                 cggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATaaa                      <  2:651451/149‑1 (MQ=255)                                                                                                                         ccagccagCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCa              >  1:273674/1‑149 (MQ=255)                                                                                                                              tggctgggCACGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATtcat         >  1:523096/6‑149 (MQ=255)                                                                                                                              cagccGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCGTtcct         >  1:421192/1‑147 (MQ=255)                                                                                                                              cagccGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATtcat         <  2:518957/149‑1 (MQ=255)                                                                                                                                gccGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATtcatca       <  1:452073/149‑1 (MQ=255)                                                                                                                                   gggCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATTCATCACAg    >  1:522983/1‑149 (MQ=255)                                                                                                                                     gcgcGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATTCATGACACAt  >  1:337144/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                 GGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATAGTGCCATTCATCACAGAT  >  NC_000913_3_pae_tpiA/4284856‑4285136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.