New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1207790 =	39 (0.890)	6 (0.150)	6/250	4.6	15.1%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_tpiA	1209619 =	33 (0.850)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_pae_tpiA/1209483‑1209764                                                                                                                                          |                                                                                                                                                  tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGGGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCGCAAACCAACGATTATGAAAAt                                                                                                                                       >  2:536868/1‑149 (MQ=255) tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                                       <  2:224517/149‑1 (MQ=255) tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                                       <  1:699395/149‑1 (MQ=255) tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                                       <  1:699353/149‑1 (MQ=255)       tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaagaa                                                                                                                                 >  2:657474/1‑149 (MQ=255)        ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa                                                                                                                                <  1:259740/149‑1 (MQ=255)            cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGACTTCTCCCAAACCAACGTTTATGAAAATGGAGAAAGAAc                                                                                                                            >  1:311063/1‑149 (MQ=255)                   gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                                     <  1:435579/149‑1 (MQ=255)                           ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                                             >  1:537555/1‑149 (MQ=255)                              agcagAAAAAGCGGCACCAATGCATATCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAAAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                          <  2:665256/149‑1 (MQ=255)                               gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                                                                                                         <  1:657474/149‑1 (MQ=255)                                cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                             <  1:346712/112‑1 (MQ=255)                                cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                             >  2:346712/1‑112 (MQ=255)                                  gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                      <  1:48554/149‑1 (MQ=255)                                          ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAccc                                                                                              >  1:91885/1‑148 (MQ=255)                                             aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGAAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAAACGTAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                           <  2:716579/149‑1 (MQ=255)                                                 ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                                       >  2:434983/1‑149 (MQ=255)                                                  tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt                                                                                      <  1:200351/149‑1 (MQ=255)                                                      tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTACTGCTTTTACCAGGGGGATTTaca                                                                                  >  2:743580/1‑147 (MQ=255)                                                               gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGCGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                         >  1:26214/1‑149 (MQ=255)                                                                ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                        <  2:419155/149‑1 (MQ=255)                                                                 cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                       <  2:332712/149‑1 (MQ=255)                                                                    ttGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                                    >  1:318271/1‑149 (MQ=255)                                                                                 tGAAGGCCACGGGACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATACCAAGCAAATGGCATCATTCCTGCTTTTACCAGAGGGATTTAACATGCTTATTGGCTATGTACGCGTACca                                                       >  2:778107/1‑149 (MQ=255)                                                                                  gAAGGGCACGGAAGCGGAGAACCCAACAGGAAATCCAGAGCTTTGT‑CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                                      <  1:755495/149‑1 (MQ=255)                                                                                   aaGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                     <  1:576742/149‑1 (MQ=255)                                                                                       ccACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                                 <  2:537555/149‑1 (MQ=255)                                                                                         aCGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                               <  1:434983/149‑1 (MQ=255)                                                                                                cag‑gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCTGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                        <  2:775059/147‑1 (MQ=255)                                                                                                 gg‑gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACGAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGATATTTACGCGTATCAACAAAATAACAGAaca                                       >  2:47638/1‑149 (MQ=255)                                                                                                         cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACACATCt                                >  2:335560/1‑149 (MQ=255)                                                                                                           aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCATATCAACAAATGACCAGAACACAGATCTAc                              <  2:91885/149‑1 (MQ=255)                                                                                                                  aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa                       >  1:761271/1‑149 (MQ=255)                                                                                                                              ctcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTATGCGTATCAACAAATGACCAGAACACAGATCTACAACGAAAACCGCTTAACtg           >  2:360787/1‑149 (MQ=255)                                                                                                                               tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAAGTAATCCGCTGAACtgt          >  2:777751/1‑149 (MQ=255)                                                                                                                                  cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa       <  1:406177/149‑1 (MQ=255)                                                                                                                                   aaaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATCACCAGAACACAGAACTACAACGTAATGCGCTGAACTGTGCAg      >  2:626554/1‑149 (MQ=255)                                                                                                                                    aaCCACTGTTTATGAAAATGAAGTAATAACAAGCAAATCTCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAgg     <  1:372416/149‑1 (MQ=255)                                                                                                                                       cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATg  >  2:528476/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                  TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGG‑GACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_pae_tpiA/1209483‑1209764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.