New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1417458 =99 (0.950)8 (0.080) 8/262 13.2 8.0% intergenic (‑72/+30) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
?NC_000913_3_pae_tpiA 1417483 = 92 (0.950)intergenic (‑97/+5) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

GCTTGCCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAA  >  NC_000913_3_pae_tpiA/1417309‑1417603
                                                                                                                                                      |                                                                                                                                                 
gcttgcCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCa                                                                                                                                                   <  3:664799/150‑1 (MQ=255)
gcttgcCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCa                                                                                                                                                   >  1:987804/1‑150 (MQ=255)
  ttgcCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTTTCTTTTTTTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑CTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATa                                                                                                                                                 >  2:1042812/1‑150 (MQ=255)
  ttgcCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATa                                                                                                                                                 <  4:161972/150‑1 (MQ=255)
  ttgcCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATa                                                                                                                                                 >  1:484624/1‑150 (MQ=255)
     cccACAGGACGACGTCAGGTTCACCGGATGATTTTTTTTTTTTTTTTTATAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGcc                                                                                                                                              >  1:58379/1‑150 (MQ=255)
        acaGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTgc                                                                                                                                           >  3:597950/1‑150 (MQ=255)
         caGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTCTTCACTCAATGATCTTGCCGGATACACACTGTTCATAGCCTgcg                                                                                                                                          <  2:605866/150‑1 (MQ=255)
            gacgacGTCACGTCCGCCGGATGAAGTTTTCGCTGTCCGTAACGGGAAGTGTGGTATGTTGCTCCTTGTTTTTTAACCTCAACTCAGAGTAGAATACG‑CTTGTTTCAGTGGATGATCTTCCCGGATATACACGGTTCATTGCCTGCGCCa                                                                                                                                       >  2:18251/1‑150 (MQ=255)
                 cgTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGc                                                                                                                                  <  3:79882/150‑1 (MQ=255)
                  gTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCa                                                                                                                                 <  2:348466/150‑1 (MQ=255)
                  gTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCa                                                                                                                                 >  2:148435/1‑150 (MQ=255)
                   tCAGGTTCACCGGATGATTTTTTTTTTTTTTTTTACAGGAAGAGTGGTTTTGTGCTTATTGTTTTTTAACCTCAACTCAGATTAATATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATTTTTTTTGTTCTTTTCCTGCGCCATACGCAg                                                                                                                                >  2:820862/1‑150 (MQ=255)
                       gTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTa                                                                                                                            >  1:348480/1‑150 (MQ=255)
                              ggATGATTTTTTCTCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                     >  2:157871/1‑150 (MQ=255)
                                 tgatTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAg                                                                                                                  >  1:302981/1‑150 (MQ=255)
                                 tgatTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAg                                                                                                                  >  1:937523/1‑150 (MQ=255)
                                     tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAttt                                                                                                              <  1:83354/150‑1 (MQ=255)
                                       tttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCa                                                                                                            <  4:362794/150‑1 (MQ=255)
                                        ttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGGTTTCAc                                                                                                           <  2:412506/150‑1 (MQ=255)
                                        ttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGGTTTCAc                                                                                                           <  2:412517/150‑1 (MQ=255)
                                        ttCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCAc                                                                                                           <  2:808345/150‑1 (MQ=255)
                                            cTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCttt                                                                                                       >  1:744377/1‑150 (MQ=255)
                                            cTTTCCGTAACAGGAAGACTGGTTTTGTGCTCGTTGTTTTTTAACCTCTACTCTGACTATAACTCG‑TTTTGTTCAGTGAATGTTCTTGCCGGATACACACTGTTCACAGCCTGCGCCNTNCGCAGGNGATTTCTTTCAGGTTTCAcgtcn                                                                                                       >  2:951786/1‑146 (MQ=255)
                                             tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                      >  2:849762/1‑150 (MQ=255)
                                                 cGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAtt                                                                                                  >  4:158094/1‑150 (MQ=255)
                                                  gTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAttt                                                                                                 <  1:1015735/150‑1 (MQ=255)
                                                     aCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAt                                                                                              <  4:620752/150‑1 (MQ=255)
                                                     aCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAt                                                                                              <  4:532952/150‑1 (MQ=255)
                                                        ggAAGAGTGGATTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCCTTCAGATTTCACCTTTTAGTTTCAttt                                                                                            >  2:1035688/1‑149 (MQ=255)
                                                         gAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCa                                                                                          >  3:294928/1‑150 (MQ=255)
                                                          aaGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCaa                                                                                         <  1:1028968/150‑1 (MQ=255)
                                                           agagTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAAt                                                                                        <  2:972268/150‑1 (MQ=255)
                                                               tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTaga                                                                                    <  1:374384/150‑1 (MQ=255)
                                                               tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTaga                                                                                    >  1:1036472/1‑150 (MQ=255)
                                                               tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTaga                                                                                    <  4:645284/150‑1 (MQ=255)
                                                                  ttttGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGtt                                                                                 >  2:1030493/1‑150 (MQ=255)
                                                                   tttGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTg                                                                                >  2:71032/1‑150 (MQ=255)
                                                                        gCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGa                                                                           >  1:886506/1‑150 (MQ=255)
                                                                         cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAgg                                                                                                                               <  3:242088/97‑1 (MQ=255)
                                                                         cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAgg                                                                                                                               >  4:242088/1‑97 (MQ=255)
                                                                         cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGaa                                                                          >  1:348873/1‑150 (MQ=255)
                                                                          tCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGaaa                                                                         >  3:459187/1‑150 (MQ=255)
                                                                          tCATTGTTTTTTAACCTCAACTAAGATTAAAATTCG‑TTTTGTTCAGTGATTGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACTTTTTAATTTCATTGCAATTAGATTTGCCAGaaa                                                                         >  1:738957/1‑150 (MQ=255)
                                                                             ttGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTc                                                                      >  3:435052/1‑150 (MQ=255)
                                                                             ttGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTc                                                                      <  4:483153/150‑1 (MQ=255)
                                                                             ttGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTc                                                                      >  3:649420/1‑150 (MQ=255)
                                                                             ttGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTc                                                                      >  1:701843/1‑150 (MQ=255)
                                                                              tGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                     >  2:959846/1‑150 (MQ=255)
                                                                                    ttAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttt                                                               <  4:353623/150‑1 (MQ=255)
                                                                                        ccTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                           <  4:480207/150‑1 (MQ=255)
                                                                                            aaCTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                       <  1:71032/150‑1 (MQ=255)
                                                                                            aaCTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                       <  2:516237/150‑1 (MQ=255)
                                                                                            aaCTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                       <  1:21939/150‑1 (MQ=255)
                                                                                              cTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCgg                                                     <  2:452627/150‑1 (MQ=255)
                                                                                              cTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCgg                                                     <  3:371030/150‑1 (MQ=255)
                                                                                              cTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCgg                                                     <  1:1118302/150‑1 (MQ=255)
                                                                                               tCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTTCggg                                                    >  2:718369/1‑150 (MQ=255)
                                                                                                cAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc                                                   <  1:1026811/150‑1 (MQ=255)
                                                                                                   aTTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAAAGTTGCCAGAAATTCGGCTTTTTTTTTTGTGGGCatg                                                >  2:119991/1‑148 (MQ=255)
                                                                                                    ttAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt                                               >  3:283340/1‑150 (MQ=255)
                                                                                                    ttAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt                                               >  4:666241/1‑150 (MQ=255)
                                                                                                        aaTTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt                                           >  1:564479/1‑150 (MQ=255)
                                                                                                        aaTTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt                                           <  3:565205/150‑1 (MQ=255)
                                                                                                          ttCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc                                         <  1:711827/150‑1 (MQ=255)
                                                                                                          ttCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc                                         <  2:701843/150‑1 (MQ=255)
                                                                                                            cG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg                                       <  1:785275/150‑1 (MQ=255)
                                                                                                                tttGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGata                                    <  2:886506/150‑1 (MQ=255)
                                                                                                                tttGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGata                                    <  1:148435/150‑1 (MQ=255)
                                                                                                                 ttGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGatat                                   <  2:83582/150‑1 (MQ=255)
                                                                                                                      cAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCa                                                                                               >  2:683518/1‑85 (MQ=255)
                                                                                                                      cAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCa                                                                                               <  1:683518/85‑1 (MQ=255)
                                                                                                                       aGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCa                             >  4:337644/1‑150 (MQ=255)
                                                                                                                         tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGTCAGATTCTTTCCTATATGCACCAgg                           <  4:375589/150‑1 (MQ=255)
                                                                                                                         tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGat                                     >  2:357626/1‑140 (MQ=255)
                                                                                                                         tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGat                                     <  1:357626/140‑1 (MQ=255)
                                                                                                                                   tGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                 <  2:564479/150‑1 (MQ=255)
                                                                                                                                   tGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                 <  4:166668/150‑1 (MQ=255)
                                                                                                                                    gCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                <  4:459187/150‑1 (MQ=255)
                                                                                                                                    gCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                >  1:668690/1‑150 (MQ=255)
                                                                                                                                    gCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                <  4:344950/150‑1 (MQ=255)
                                                                                                                                    gCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                <  3:158094/150‑1 (MQ=255)
                                                                                                                                    gCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTACAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt                <  1:969969/150‑1 (MQ=255)
                                                                                                                                       ggATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGac             >  4:14535/1‑150 (MQ=255)
                                                                                                                                         aTACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGacac           <  2:895900/150‑1 (MQ=255)
                                                                                                                                             acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCGAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATg                                  >  2:823561/1‑123 (MQ=255)
                                                                                                                                             acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGTGTTCTGATTTTTTCCTATATGCACCAGGCACATTTTTTTTACACCttt       >  1:150782/1‑149 (MQ=255)
                                                                                                                                             acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATg                                  <  1:823561/123‑1 (MQ=255)
                                                                                                                                              cacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGata                                    <  1:117743/120‑1 (MQ=255)
                                                                                                                                              cacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGata                                    >  2:117743/1‑120 (MQ=255)
                                                                                                                                               acTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                           >  2:1049390/1‑96 (MQ=255)
                                                                                                                                               acTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                           <  1:1049390/96‑1 (MQ=255)
                                                                                                                                               acTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtcat     <  2:294080/150‑1 (MQ=255)
                                                                                                                                                cTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtcatc    <  4:423880/150‑1 (MQ=255)
                                                                                                                                                 tGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtcatca   <  4:597950/150‑1 (MQ=255)
                                                                                                                                                 tGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtcatca   <  1:1030493/150‑1 (MQ=255)
                                                                                                                                                  gTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCaa  <  1:820862/150‑1 (MQ=255)
                                                                                                                                                  gTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCaa  <  3:328260/150‑1 (MQ=255)
                                                                                                                                                  agaaaTAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtt                                                                 >  4:217882/5‑87 (MQ=255)
                                                                                                                                                  agaaaTAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtt                                                                 <  3:217882/83‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                 
GCTTGCCCACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCG‑TTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAA  >  NC_000913_3_pae_tpiA/1417309‑1417603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.