New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1115624 =	NA (NA)	4 (0.090)	4/260	6.0	NA	intergenic (‑134/+38)	mdtG/lpxL	putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
	?	NC_000913_3_pae_tpiA	1115655 =	NA (NA)					intergenic (‑165/+7)	mdtG/lpxL	putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
Rejected: Coverage evenness skew score above cutoff.

TGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCAC  >  NC_000913_3_pae_tpiA/1115485‑1115770                                                                                                                                             |                                                                                                                                                   tGACATAGCAATGCGCTGCTGTTCTGCTACGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTACGCGCCCGACCTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATg                                                                                                                                           <  2:23409/149‑1 (MQ=255)     aTAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt                                                                                                                                       >  2:88679/1‑149 (MQ=255)          aaTCCGCTGTTGGTGCGCCAGGCGCGGTTAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGa                                                                                                                                  <  1:566944/149‑1 (MQ=255)                      gTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAAt                                                                                                                                                   <  1:56327/120‑1 (MQ=255)                      gTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAAt                                                                                                                                                   >  2:56327/1‑120 (MQ=255)                             aGGCGCGGTGAACATAAGAAGAAAAGATAAGCACGCTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCCGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt                                                                                                               >  2:649249/1‑149 (MQ=255)                                   ggTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATa                                                                                                         <  1:699815/149‑1 (MQ=255)                                    gTGAACATAAGAAGAACAGATACGCACACTAATTAGGCGACAG‑TGACCAGTTAAGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAg                                                                                                        <  1:393198/149‑1 (MQ=255)                                       aaCATAAGAAGAAAAGATAAGCACCCTAAGTATGCGCGCAAGTTAAAG‑GGGGCGTTATGCATAGAGGTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCAGCATGGGAGATTTAATAGCGt                                                                                                     <  2:785543/149‑1 (MQ=255)                                              gaagaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGCAGCATCCTGCATGGGAGATTTAATAGCGTGAAGGaa                                                                                              <  2:665756/149‑1 (MQ=255)                                               aagaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAAc                                                                                             >  1:341887/1‑149 (MQ=255)                                                agaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg                                                                                            >  1:465669/1‑149 (MQ=255)                                                             acacTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGa                                                                                                                                             <  2:800086/87‑1 (MQ=255)                                                             acacTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGa                                                                                                                                             >  1:800086/1‑87 (MQ=255)                                                                 tAATTATGCGCCCGCCTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGAGTTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATAGGAGCTTTAATACCGTGAAGGATCGCGTTCCGGGCGTGgttt                                                                           >  2:98592/1‑149 (MQ=255)                                                                 tAATTATGCGCCCGCCTTCCAG‑GGGCCGCAATACAGAGCTCTTTTATCGCTAAATCAGGAGGAGTTGCCGTGGTAATGCCGCATGCCACTCTGCCACATCCGACATGAGAGCTTCAATAGCGTGAAGGAACACGTTCCGCGCgtgcgtt                                                                           >  2:97359/1‑145 (MQ=255)                                                                 tAATTATGCGCCCGATTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtttt                                                                           <  1:553639/149‑1 (MQ=255)                                                                      aTGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGc                                                                      >  1:668164/1‑149 (MQ=255)                                                                            ccGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGACCGCCTTCCGGGCGTGTTTTAAAGCGACGgt                                                                >  2:355108/1‑149 (MQ=255)                                                                            ccGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt                                                                <  2:341887/149‑1 (MQ=255)                                                                              gACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAACCACCGgtgt                                                              >  2:565522/1‑149 (MQ=255)                                                                                cTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGAc                                                                   >  2:205331/1‑142 (MQ=255)                                                                                cTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGAc                                                                   <  1:205331/142‑1 (MQ=255)                                                                                 ttCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc                                                           >  1:124924/1‑149 (MQ=255)                                                                                    cAG‑GGGGCGGAATCCGGGGAGCTTTTAGCGCGAAAGCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac                                                        <  2:501766/149‑1 (MQ=255)                                                                                    cAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCAATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac                                                        <  2:567912/149‑1 (MQ=255)                                                                                            cgcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTGAAGGCGACGGTGTAACCACATATACt                                                 >  1:95224/1‑149 (MQ=255)                                                                                             gcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTg                                                <  1:88679/149‑1 (MQ=255)                                                                                                           ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGACTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATCCTGCTCTGCTGCcatca                                  >  2:92322/1‑149 (MQ=255)                                                                                                           ttttATCGCTAAATCAGGGGGATTTGCTGGGTTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCcatca                                  <  1:354919/149‑1 (MQ=255)                                                                                                                   cTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTGAAAGCGACGGTGTAACCACATTTACTGCTCTGCTGCCATCCTGATGCAt                          >  2:130117/1‑149 (MQ=255)                                                                                                                                aTTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACtt             >  2:108528/1‑149 (MQ=255)                                                                                                                                 tttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACttt            <  2:668164/149‑1 (MQ=255)                                                                                                                                 tttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACttt            <  1:355108/149‑1 (MQ=255)                                                                                                                                     cTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTATAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTc        >  2:562753/1‑149 (MQ=255)                                                                                                                                          gTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGTTGCATTTTTCGACCACTTTGTTCATCCa   >  2:442425/1‑149 (MQ=255)                                                                                                                                           tAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCAc  >  2:694630/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                   TGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCAC  >  NC_000913_3_pae_tpiA/1115485‑1115770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.