New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4070452 =	75 (2.350)	9 (0.290)	9/274	2.4	11.4%	intergenic (‑51/+63)	yihR/yihS	putative sulphoquinovose mutarotase/sulphoquinovose isomerase
	?	NC_000913_3_pae_tpiA	4070475 =	67 (2.170)					intergenic (‑74/+40)	yihR/yihS	putative sulphoquinovose mutarotase/sulphoquinovose isomerase
Rejected: Frequency below/above cutoff threshold.

TGGTCGCGTGATAATCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAGG  >  NC_000913_3_pae_tpiA/4070308‑4070596                                                                                                                                                    |                                                                                                                                                 aggatatttatcacctgctgcattgcctggtgatcccgcgtatcccgttagcgcccggcatagctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaagtagggtacggtgtttagctcctccctaacc                                                                                                                                                 <  1:280405‑M1/2‑1 (MQ=255)    tctcgTGATAACCCCCCTCGGCAAGTGAAACGGTCTGCCCACCGCAATGCATATTGGTGATTTGCATACAAGGCACCTTTATTAACGACATACAGCCTCCCGTGAGGCTC‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGcc                                                                                                                                           <  1:145231/146‑1 (MQ=255)         tGATAATCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCttt                                                                                                                                      <  1:320338/149‑1 (MQ=255)         tGATAATCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGAATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTACCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCAACAGAAGGTACGCTCGCCCGttt                                                                                                                                      >  1:103810/1‑149 (MQ=255)          gATAATCCCCCGCGGCAAGTGAGACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg                                                                                                                                     <  2:66334/149‑1 (MQ=255)           aTAATCCGCCGCGGCCAGTGAAATGGTCTGTCGACTGCAATGCATATTGGTGATTCGGATACAAGGCACCTTAATTAAAGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAACCTGCACCGGACGGTCCCCTCGCCCCTTTgg                                                                                                                                    <  1:263470/149‑1 (MQ=255)           aTAATCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGGGATTTGAATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgg                                                                                                                                    <  1:105913/149‑1 (MQ=255)           aTAACCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgg                                                                                                                                    <  2:144221/149‑1 (MQ=255)              aTCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGga                                                                                                                                 <  1:337733/149‑1 (MQ=255)               tCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGCCGGTCCCCTCGCACCTTTGGGgag                                                                                                                                >  1:543673/1‑149 (MQ=255)               ctgctgcattgcctggtgatcccgcgtatcccgttagcgcccggcatggctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTggg                                                                                                                                   <  1:366896‑M1/16‑1 (MQ=255)                 ccccGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGagag                                                                                                                              <  1:86557/149‑1 (MQ=255)                  cccGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAgg                                                                                                                             >  1:57089/1‑149 (MQ=255)                    gcattcgctggtcaccccgcgtatcccgttagcgcccggcatggctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGagag                                                                                                                              >  1:931‑M1/129‑149 (MQ=255)                      gttgcgtggtggtcccgcgtatgccgttagggcccggcatggctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAggg                                                                                                                            >  2:112119‑M1/127‑149 (MQ=255)                      cgGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa                                                                                                                         <  1:394253/149‑1 (MQ=255)                       gggaaGTGAAACGGTCAGTCCACTGCAATGCATATTGGTGAGTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAATCTGCACCGGACGGTCCCCGCGCCCCTTTGGGGAGAGGGTTAg                                                                                                                        <  2:197118/146‑1 (MQ=255)                          aaGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTACACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGga                                                                                                                     >  2:129836/1‑149 (MQ=255)                          aaGTGAAACAGTCCGTCCACAGCAATGCATATTGATGATTTGCATACAAGGCACCATAATTAACGAGATACAGCCTCCCGTGATGCTG‑ATGTC‑AAACCC‑AAAAAGTACGCCGGTCGGTCCCCTCGCCCCTTTGGGGACAGGGTTAGGga                                                                                                                     >  2:450807/1‑149 (MQ=255)                           ctggtgatcccgcgtatcccgttagcgcccggcatggctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAgg                                                                                                                       >  2:366896‑M1/122‑149 (MQ=255)                               aaaCGGTCTGTCAACTGCAATGCATATTGGTGATTGGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg                                                                                                                <  2:155640/149‑1 (MQ=255)                                 aCGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa                                                                                                              >  2:535824/1‑149 (MQ=255)                                  tcccgcgtatcccgttagcgcccggcatggctccagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg                                                                                                                >  1:266931‑M1/115‑149 (MQ=255)                                      cTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAcc                                                                                                         >  2:445335/1‑149 (MQ=255)                                       tttCCACTCAAATGCATTTGGGTAATTTGCAAACAAGGCACTTAAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAACCTGCACCGGACGGTCCCCTCACCACGGGGGGGAGAGGGTTAGGGAGAGGGGAAAAccc                                                                                                        <  2:407820/147‑1 (MQ=255)                                       tGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAccc                                                                                                        >  1:297715/1‑149 (MQ=255)                                         tCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGc                                                                                                      >  2:33318/1‑149 (MQ=255)                                           cACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTCAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAg                                                                                                                        <  2:310813/129‑1 (MQ=255)                                           cACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTCAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAg                                                                                                                        >  1:310813/1‑129 (MQ=255)                                            aCTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAcc                                                                                                   >  2:389353/1‑149 (MQ=255)                                            aCTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAcc                                                                                                   >  1:41784/1‑149 (MQ=255)                                                  aTGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAttt                                                                                             >  1:260083/1‑149 (MQ=255)                                                                   cagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa                                                                                                            <  2:312903‑M1/39‑1 (MQ=255)                                                                   cagcggttgcagcgggtctgctggatattaatgcgaaataactgatctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa                                                                                                            >  1:312903‑M1/82‑120 (MQ=255)                                                                     aTACAAGGCACCTTAATGAACGACATACAGCCTCCCGTGAGGCTG‑ATGGC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGGTAGGGAGCGGGGAAAACCCGCACCCTATTTTCAGCACAGTTGATTCgga                                                                          >  2:314995/1‑147 (MQ=38)                                                                     aTACAAAGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCGCCGCCCTATTTTCAGATCAGTTATTTCGCa                                                                          >  2:528933/1‑149 (MQ=255)                                                                      tACAAGGCACCTTAATTAACGACATACAGCCTCCCATGAGGCTG‑ATGTC‑AAACCC‑AAAAACTACACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGCTCAGTTATTTCGCAt                                                                         >  1:369508/1‑149 (MQ=255)                                                                       aCAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTCGGGAGAGGGTTAGGGAGAGAGGCAACCGCGCACCCTATTTTCAGATCAGTTATTTCGCAtt                                                                        >  2:238712/1‑149 (MQ=255)                                                                         aaGGCACCTGACTGAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACACGCCCCCTATTTTCAGATCAGTTATTTCACCTTaa                                                                      >  2:364381/1‑149 (MQ=38)                                                                            ggaCCTTAATTAACGACATACAGGCTCCCGTGATGCTG‑ATGTC‑AAACGC‑AAAAACTGCAGCGGACGGTCCCCTCGCCCCTTTGGGGAGGGGGTTAGGGAGAGGGGAAAACCCGCCACCTATTTTCAGGTCAGTTATTTCGCATTCatat                                                                   >  2:278858/3‑149 (MQ=38)                                                                            gCACCTTAATTAACGACAAACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGCCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat                                                                   <  1:315413/149‑1 (MQ=255)                                                                               ccTAAATAACCGACATACGCCCTCCCGTGGGTCTG‑TGGAA‑AAACCC‑AAAAACGCCCCCGGACGGCCCCCTCGCCCTTTGGGGGAGGGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca                                                                <  1:389353/149‑1 (MQ=255)                                                                                gtaactcaaCGAAATACACCCTCCTGGGAGGCTG‑A‑GTCGAAACCC‑AAAACCGGCACCGGACGGTCCCCTCGCCCCTTGGGGGGGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcag                                                               <  2:377244/142‑1 (MQ=255)                                                                                cTTAATTAACGAGATACAGCTACCGGTGAGGGTT‑ATGTA‑AAATCT‑TAAACCTGCACCGGAGGGTCACCTCGCCCCTTTGGGCAGAGGTTTAGTCAGATCGTATAACCCGCACCCTATTTTCAGATCAGTAATTTTGCAGTATTAGCcag                                                               <  2:210547/149‑1 (MQ=255)                                                                                cTTAATTAACGACAGGCGGCCTCCGGCGGGGCTG‑AGGTC‑AAACCC‑AAAAACTGCTCGGGAGGGTCCCCTCGCCCTTGTGGGGGGGGGGTTGGGGAGGGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcag                                                               <  2:407124/149‑1 (MQ=255)                                                                                 ttaattaaCGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg                                                                                                                                   <  2:522530/80‑1 (MQ=255)                                                                                 ttaattaaCGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg                                                                                                                                   >  1:522530/1‑80 (MQ=255)                                                                                          gACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCCGATCAGTTATTTCGCATTAATATCCACCAGACCCGCt                                                     >  2:13816/1‑149 (MQ=255)                                                                                          caacaccAGCCTCCCGGGAGGCTGTATGTA‑AAACCC‑AAAACCGGCACCGGATGGTCCCCTCGCCCTTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGc                                                      <  2:540236/143‑1 (MQ=38)                                                                                           aCATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg                                                                                                                 >  2:245742/1‑88 (MQ=255)                                                                                           aCATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg                                                                                                                 <  1:245742/88‑1 (MQ=255)                                                                                            gctACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAGACTGCACCGGACGGCCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTCTTCTCAGATCAGTTATTTCGCTTTAATATCCAGCAGACCCGCTGc                                                   <  1:450807/147‑1 (MQ=39)                                                                                             catcAGCCTCACGGGAGGCTGTATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCtag                                                   >  1:540236/4‑147 (MQ=38)                                                                                              atcAGCCTCACGGGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGAGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCaa                                                 >  1:476490/3‑149 (MQ=255)                                                                                                 aGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAAcca                                              >  2:258641/1‑148 (MQ=255)                                                                                                   cctcctGTGGAGGTG‑CTGCC‑AAACCC‑AGAACCTGCCCCGGACGGTCCCCGCGCCCCTTTGGGGAGAGGGGTAGGGAGGGGGGAAAACCCGCACCCTATTTTCAGATCAGTTCGACCGCACTAATATCCAGCAAACCCGCTGCAACCGCt                                            <  2:549845/149‑1 (MQ=255)                                                                                                   ccTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCt                                            >  1:415511/1‑149 (MQ=255)                                                                                                    cTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGCGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTg                                           >  1:544711/1‑149 (MQ=255)                                                                                                      cccGTGAGGCTG‑AGGTC‑AACCCC‑AAAACCGGCCCCGGACGGCCCCCCCGCCCTTTGGGGGAGAGGGTTAGGGAGGGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGa                                         <  1:129836/149‑1 (MQ=255)                                                                                                       ccGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAg                                        >  2:230133/1‑149 (MQ=255)                                                                                                       ccGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCCCTGGAg                                        >  2:247942/1‑149 (MQ=255)                                                                                                        cGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGagag                                                                                                                              <  2:130660/62‑1 (MQ=255)                                                                                                        cGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGagag                                                                                                                              >  1:130660/1‑62 (MQ=255)                                                                                                        cGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGc                                       >  1:436374/1‑149 (MQ=255)                                                                                                              gCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGcc                                 >  2:99751/1‑149 (MQ=255)                                                                                                               atctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAgg                                                                                                                             >  1:76380‑M1/38‑59 (MQ=255)                                                                                                               atctgaaaatagggtgcgggttttcccctctccctaaCCCTCGCCCCTTTGGGGAGAgg                                                                                                                             <  2:76380‑M1/22‑1 (MQ=255)                                                                                                                tG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCGCGCCCCTTTGGGGAGAGGGGTAGGGAGGGGGGAAAAACCGCACCCTATTTTCAGATCCGTTATTTCGAATTAATATGCAGCAGACCCACTCCAACCGCTGGAGCGATCCCga                               >  2:527519/1‑148 (MQ=255)                                                                                                                   ttGTC‑AAACCC‑‑AACACTGCACCGGACGGCCCCCTCTCCTCTTTGGGTGGGGGGTTGGGGAGGGGGGAAAACCCGCATCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGgcg                            <  1:90126/148‑1 (MQ=255)                                                                                                                   aTGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGgc                             >  2:286581/1‑149 (MQ=255)                                                                                                                     tgc‑AAACCCAAAAAACGGCCCCGGACGGGCCTCTCGCCCCTTTGGGGAGAGGGTTCGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGgcg                            <  2:506048/147‑1 (MQ=255)                                                                                                                           aCCC‑AAAAACTGCACCGTACGGTCCCCTCGCCCCATTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGGGGTAACg                      >  1:157736/1‑149 (MQ=255)                                                                                                                           aCCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACg                      >  1:157792/1‑149 (MQ=255)                                                                                                                           aCCA‑AAAACCGGCACCGGGCGGTCCCCTCGCTCTTTTTATGCCATGATGAGGAAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACg                      <  1:390257/149‑1 (MQ=255)                                                                                                                              c‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCCAAGGGGa                   >  1:154692/1‑149 (MQ=255)                                                                                                                                     cggccccGGACGGCCCCCGCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTCATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATAcgcg             <  1:431563/144‑1 (MQ=39)                                                                                                                                        ccccGGACGGTCCCTCCGCCCTCTGGTGGAGGGGGTAAGGGTGTGGAGTAAGCTCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGa          <  2:59829/147‑1 (MQ=255)                                                                                                                                          ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagca                                                             >  2:352649/1‑96 (MQ=255)                                                                                                                                          ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagca                                                             <  1:352649/96‑1 (MQ=255)                                                                                                                                          ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATc        >  1:348759/1‑149 (MQ=255)                                                                                                                                          ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATc        >  1:332767/1‑149 (MQ=255)                                                                                                                                               cGGCCCCCTCGCCCATTTGGGAGGAGGATTAGGGTCAGTGGAACTCACGAGGCCTATGTTGACATCGTTTATGTCTCGGGTGGATCCTGCAGATTCTCTGCAAGCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAg   <  2:476490/149‑1 (MQ=255)                                                                                                                                                ggcccccTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGa                                         <  2:471821/107‑1 (MQ=255)                                                                                                                                                ggTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACTCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAgg  >  1:444091/1‑149 (MQ=255)                                                                                                                                                ggTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGa                                         >  1:471821/1‑110 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TGGTCGCGTGATAATCCCCCGCGGCAAGTGAAACGGTCTGTCCACTGCAATGCATATTGGTGATTTGCATACAAGGCACCTTAATTAACGACATACAGCCTCCCGTGAGGCTG‑ATGTC‑AAACCC‑AAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAGG  >  NC_000913_3_pae_tpiA/4070308‑4070596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.