New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1911650 =	51 (1.590)	5 (0.170)	4/260	3.9	9.7%	intergenic (+1/+45)	yebQ/htpX	putative transporter/putative endopeptidase
	?	NC_000913_3_pae_tpiA	1911680 =	46 (1.570)					intergenic (+31/+15)	yebQ/htpX	putative transporter/putative endopeptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCA  >  NC_000913_3_pae_tpiA/1911502‑1911796                                                                                                                                                      |                                                                                                                                                   gagTAGAGGCGCGGCGGTGGTGGCGCTGATGCTAAGTCAGTTTGGAGATAATGGTACACACGTCTCGATGGTGGCTGCGGCTATTCTGGCAGTGCTTGCTGGCTGTGTCCGTGGTTTGCGTATCACTTCGGCACGGTCGAG‑GGCATgaa                                                                                                                                                    >  2:280365/1‑149 (MQ=255)       ggtcgcggcgtTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAgc                                                                                                                                              <  2:88234/146‑1 (MQ=255)       cggcggggcgCTGGGGGCGATGGTGCTAATTGATGTTGGAGATAATGGTACATACGTCTCGCTGATGGCTGCGGCTATTCTGGGTGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCGCTCAGCCACGATCCAG‑GGCATAAAAAAAgc                                                                                                                                              <  2:116775/149‑1 (MQ=255)            cggcgcTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTc                                                                                                                                         <  1:406778/149‑1 (MQ=255)                     tggCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGGGGGTCGGTCAGGAc                                                                                                                                >  2:456250/1‑149 (MQ=255)                         gcTGATGCTAAATAAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACgcgc                                                                                                                            >  1:287971/1‑149 (MQ=255)                          cTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCt                                                                                                                           >  2:74603/1‑149 (MQ=255)                                 tAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCACGTCGATCAGGACGCGCTTTTTAGt                                                                                                                    >  2:343454/1‑149 (MQ=255)                                  aaaTCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTa                                                                                                                   <  2:327999/149‑1 (MQ=255)                                     tCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTAttt                                                                                                                >  2:150977/1‑149 (MQ=255)                                     tCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTAttt                                                                                                                >  2:151031/1‑149 (MQ=255)                                      cAGTTTGGAGATAATGGCACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTa                                                                                                               <  1:176055/149‑1 (MQ=255)                                            ggAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCat                                                                                                         <  2:287971/149‑1 (MQ=255)                                            ggAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCat                                                                                                         <  2:461024/149‑1 (MQ=255)                                             gagaTAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTCTAGTATTTACTTCata                                                                                                        >  2:326018/1‑149 (MQ=255)                                              ggaataTGGTTCACACGTCTGGCTGATGGCTTCGGCTATTCTGGCAGTGTGTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCatat                                                                                                       <  2:68020/144‑1 (MQ=255)                                                 tAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTAc                                                                                                    <  1:74603/149‑1 (MQ=255)                                                  aaTGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACt                                                                                                   >  2:527465/1‑149 (MQ=255)                                                   aTGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATAAGGACGCGCTTTTTAGTATTTACTTCATATTACtt                                                                                                  >  2:340425/1‑149 (MQ=255)                                                                 tcGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGAt                                                                                                                                      >  1:8567/1‑99 (MQ=255)                                                                 tcGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGAt                                                                                                                                      <  2:8567/99‑1 (MQ=255)                                                                     tGATGGCTGCGGGTAGCTCGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GCCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACg                                                                                <  2:71636/149‑1 (MQ=255)                                                                       aTGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTc                                                                                                           <  1:144473/120‑1 (MQ=255)                                                                       aTGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTc                                                                                                           >  2:144473/1‑120 (MQ=255)                                                                       aTGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCa                                                                              <  1:150977/149‑1 (MQ=255)                                                                       aTGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCa                                                                              <  1:151031/149‑1 (MQ=255)                                                                                gCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCaa                                                                     >  2:239178/1‑149 (MQ=255)                                                                                gCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCaa                                                                     >  1:212581/1‑149 (MQ=255)                                                                                gCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTACCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCACTACATATTCATTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCaa                                                                     <  2:379223/149‑1 (MQ=255)                                                                                       tGGCAGTGCTTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAG‑CTCGGGAAAGAGGCGTGAAGAAGTCGCGTCGATCAGGACGCGCTTGTTAGTATTTACTTCATATTACTTTAGGTATTCAGCCGTACGCGGAGCTTCTAttgattt                                                              >  2:520822/1‑144 (MQ=255)                                                                                       tGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGttt                                                              <  1:239178/149‑1 (MQ=255)                                                                                                   ctgcCTGTGTCAGTGGTTTACGTATCACTCGACCACGTGCCGG‑GGCATAAAAAAAGCGCGTCGCTCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGcggcgg                                                  >  1:301248/1‑149 (MQ=255)                                                                                                      ccTCTGTCAGTGGTTTACGTATCGCTCAGCCCCTATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCgggtg                                               <  1:268000/149‑1 (MQ=255)                                                                                                           gtCAGTGGGTTACGTATCACTCAGGCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCa                                          <  2:39038/149‑1 (MQ=255)                                                                                                               gTGGTTTACGTATCACTCAGCAATGATCCAG‑GGCATAAAAGATGCGGATCGAGTAGGACGACCATTTAAGTAGTTACTGCATATTATTTCGGGTGTGTAACTGTACGCGGAACATAAATTGATTTATCAAGCGACGGGTGTGTCAAGaa                                      >  2:440968/1‑149 (MQ=255)                                                                                                                  gTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                   >  1:126509/1‑149 (MQ=255)                                                                                                                  gTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                   >  2:551079/1‑149 (MQ=255)                                                                                                                  gTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGaacaa                                   <  2:126509/149‑1 (MQ=255)                                                                                                                     tACGTATCACTCAGCCACGAGCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTc                                >  2:326493/1‑149 (MQ=255)                                                                                                                         tATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTg                            >  1:208242/1‑149 (MQ=255)                                                                                                                            cACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGc                         <  1:551079/149‑1 (MQ=255)                                                                                                                             aCTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTCCTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCACTTCGTTTATCCAGCGGCCGGTGGATCATGAACAAATCACAGGGCg                        >  2:315946/1‑149 (MQ=255)                                                                                                                             aCTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCCTGAACAACTCACTGAGCg                        >  2:392213/1‑149 (MQ=255)                                                                                                                              cTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGa                       >  1:210651/1‑149 (MQ=255)                                                                                                                                    cACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGa                 >  1:420890/1‑149 (MQ=255)                                                                                                                                    cACCATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGa                 <  2:66148/149‑1 (MQ=255)                                                                                                                                     aCGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGCTTTCGAc                >  2:247294/1‑149 (MQ=255)                                                                                                                                         tCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAg                                                                                               >  1:275068/1‑66 (MQ=255)                                                                                                                                         tCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAg                                                                                               <  2:275068/66‑1 (MQ=255)                                                                                                                                            aG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTTAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGt         <  2:212581/149‑1 (MQ=255)                                                                                                                                                    aaaaaaaGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCa  <  1:546145/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GAGTAGCGGCGCGGCGCTGGTGGCGCTGATGCTAAATCAGTTTGGAGATAATGGTACACACGTCTCGCTGATGGCTGCGGCTATTCTGGCAGTGATTGCTGCCTGTGTCAGTGGTTTACGTATCACTCAGCCACGATCCAG‑GGCATAAAAAAAGCGCGTCGATCAGGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCA  >  NC_000913_3_pae_tpiA/1911502‑1911796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.