New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3335199	56 (0.940)	5 (0.090)	5/286	8.1	8.8%	intergenic (+12/+36)	sfsB/murA	malPQ operon transcriptional activator/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
	?	NC_000913_3_pae_tpiA	= 3335219	49 (0.830)					intergenic (+32/+16)	sfsB/murA	malPQ operon transcriptional activator/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGGAGAGATGATTATTGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAACCACCGTCGTCCCTTC  >  NC_000913_3_pae_tpiA/3335051‑3335345                                                                                                                                                     |                                                                                                                                                    aaGGAGAGATGATTATTGCGAAAGCCCTTGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCgg                                                                                                                                                     >  2:242867/1‑149 (MQ=255)       agaTGATTATTGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGccc                                                                                                                                               >  2:868245/1‑149 (MQ=255)        gattatTATTGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGccc‑c                                                                                                                                             <  1:868245/149‑1 (MQ=255)         atgatTATTGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGAACCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTAAACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGccc‑ca                                                                                                                                            >  2:547902/1‑148 (MQ=255)             ttattGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGaa                                                                                                                                        <  1:515191/149‑1 (MQ=255)               attGCGAAAGCCCTGGGAACTGACCTCTGGTTTATCTGGTCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACg                                                                                                                                      <  1:191763/149‑1 (MQ=255)               attGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑AGAGAACg                                                                                                                                      >  1:525536/1‑149 (MQ=255)                 tGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCATACCCATGAGCTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACggg                                                                                                                                    <  1:963131/149‑1 (MQ=255)                 tGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACggg                                                                                                                                    >  2:165653/1‑149 (MQ=255)                    gAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAATGGTCTGGCGGTAGCCC‑CGCGAACGGGGCt                                                                                                                                 >  2:145353/1‑149 (MQ=255)                        gCCCTGGGAACTGACCCCTGGGTTATTTGGCTATCACGCTACCTTGATCCGCTGACTCATGAGTTTATCGACAGATCGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCa                                                                                                                             <  1:57902/149‑1 (MQ=255)                           cTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGCACGGGGCTGCCAGct                                                                                                                          >  2:798625/1‑149 (MQ=255)                            tGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGctc                                                                                                                         >  1:857469/1‑149 (MQ=255)                              ggAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGGGGTCTGGCGGTAGACC‑CGCGAAAGGGGCTGGCAGccgtc                                                                                                                       >  2:1039797/1‑145 (MQ=255)                                   tGACCCCTGGGTTATCTGGCCATCACGCTACCAGGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAGTGAGTGGTCTGGCGGTAGGCG‑CGCGAACGGGGCGACGAGCACTCCGACg                                                                                                                  >  1:841136/1‑149 (MQ=255)                                   tGACCCCTGAGTTATCTGGCCATCACGCTACCATGATCCGCAGAACCATGAGTTTATCGACAGAACGCAGTTCATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGCGGCTGCCAGCTCTCAGAct                                                                                                                  >  2:474897/1‑148 (MQ=255)                                       cccTGCGTTATCTGGCCATCACGCCACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGATGATGAGTAGCTACACTAAACCGAAAAAATGAGTGGTCTCGCGGTCGCCC‑CGCGGACGGGGCAGACAGCTCTCAGACGatta                                                                                                              >  2:567014/1‑149 (MQ=255)                                        ccTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCCCTCAGACGagtat                                                                                                             >  2:703525/1‑149 (MQ=255)                                          tGGGTTATCTGGCCATCACTCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACTCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTc                                                                                                           <  1:268953/149‑1 (MQ=255)                                                     gCCATCACGCTACCATGATCCGCAACCCCATGGGATTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGACCGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCacac                                                                                                >  1:250520/1‑149 (MQ=255)                                                        aTCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAACTATCAGACGATTATTCGCCTTTCACACGCt                                                                                             >  1:936667/1‑149 (MQ=255)                                                             gCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCActa                                                                                        >  1:779792/1‑149 (MQ=255)                                                               tACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCATCTCTCAGACGATTATTCGCCTTTCACACGCTCAATAtt                                                                                      >  1:716037/1‑149 (MQ=255)                                                                  cATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGACCGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCCATATTTGc                                                                                   >  2:328671/1‑149 (MQ=255)                                                                    tGATCCGCAGACCCATGAGTTTATCGGCAGAACGCAGTTGCTGCGTAGCTGGACTAAACCGAACTACTGAATGGTCTGGCGG‑AGCCCGCACGAACGGAGCGGCCAACTCTATGACGATTATTCGACTTTCAGATGGTCAGTAtttcggc                                                                                 >  2:523057/1‑145 (MQ=255)                                                                    tGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCAc                                                                                 <  1:543749/149‑1 (MQ=255)                                                                    tGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGAATATTCGCCTTTCACACGCTAAATATTTGCAc                                                                                 >  1:16838/1‑149 (MQ=255)                                                                    tGATCCGCAAACCCATGAGTTTATCGACAAAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGAGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCAc                                                                                 <  1:343194/149‑1 (MQ=255)                                                                    tGATCACCAGACCAATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGGCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCAc                                                                                 <  1:343415/149‑1 (MQ=255)                                                                       ccggaaGACCCAGGAGTTTATCAACAGAACGCAGTGAAGGCGTAGCCACACTAAACCGAAAAAATGAGTGGTCTGGCGGAGGCCC‑CGCGAACGGGGCGGCCAGCTCTCAGACGATTATCCCCCTTTCACACGCTCCATATTTGCACCTa                                                                              <  2:250520/144‑1 (MQ=255)                                                                          gCAGACCCATTAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAg                                                                           <  1:1039797/149‑1 (MQ=255)                                                                                  aTGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGt                                                                   <  1:242867/149‑1 (MQ=255)                                                                                    gAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGATCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCGGttt                                                                 >  2:1019609/1‑149 (MQ=255)                                                                                     aGTTTACCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCAACCTGGCAATATTTGCACCTAAAGCGCGCAGTTTg                                                                <  2:485841/149‑1 (MQ=255)                                                                                           tCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTAGTCGCCTTTCTCACGCTCAATATTTGCACCTAAAGCGAGCAGTTAGTAttaa                                                          >  2:570510/1‑147 (MQ=255)                                                                                             gACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGATCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAAt                                                        >  1:618183/1‑149 (MQ=255)                                                                                             gACAGAACGATGTTGATGCGTAGCTTCACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCCTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAAt                                                        <  1:595646/149‑1 (MQ=255)                                                                                              aCAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATg                                                       >  1:129434/1‑149 (MQ=255)                                                                                               ctaaaCGCAGTTGATGCGTAGCTACAGTAAACCGAAAAAATGAGTTGTCTGGCCGTAGACC‑CGCGAACGGGGCTGCCCGCTCTCAGACGATTATTCGCCTTTCACACGCGCAATATTTGCACCTCAAGCGCGCAGTTTGTCTTCAATGc                                                      <  1:60567/146‑1 (MQ=255)                                                                                                aGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGCTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGAAGATTATTCGCCTTTCACACGCTCACTATTTGCACCGACAGCGCGCCGCTCGTCTTCCATGCg                                                     >  2:263523/1‑149 (MQ=255)                                                                                                 gAACGCAGTTGATGCGTAGCTACTCTGAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGt                                                    <  1:758510/149‑1 (MQ=255)                                                                                                   aCGCAGTTGATGCTTAGCTACACTAAACCTAAAAAATGAGTTGTCTGACGGTACCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTc                                                  <  1:923114/149‑1 (MQ=255)                                                                                                    cGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTAACAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCg                                                 >  1:66147/1‑149 (MQ=255)                                                                                                      cAGTTGATGCGTAGCGACACAAAAACGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTa                                               <  2:978260/149‑1 (MQ=255)                                                                                                            aTGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcg                                         >  1:685701/1‑149 (MQ=255)                                                                                                              gCGTAGCTACACTAAATCAAAAAAATGATTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcgat                                       <  1:135966/149‑1 (MQ=255)                                                                                                                     tACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGAtgtg                                >  1:786070/1‑149 (MQ=255)                                                                                                                     tACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGCTCGTAGCCACGATCGAtgtg                                >  1:597595/1‑149 (MQ=255)                                                                                                                       cacTAAACCGAAAAAATGAGTGGTCTGGCGGTACACC‑AGGGAATGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCACAGTTTGTCTTCAATGCGTTCTTAGCCACGATCGATGTGAt                              >  1:248619/1‑149 (MQ=255)                                                                                                                          tAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATTTGAaaaa                           >  2:567327/1‑149 (MQ=255)                                                                                                                             aCCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATAATTCGCCTTTCACACGCTCAATATTTGCCCCTAAAGCGCGCAGTTTGTCTTCAATGCGTTAGTAGCCACGATCGATGTGATAAATAc                        >  1:608900/1‑149 (MQ=255)                                                                                                                               cGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGa                      >  2:750475/1‑149 (MQ=255)                                                                                                                               cGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTACTGTTCTGGCACACGCCGCAGGTGTGCACCTAAAGCGCGCAGTGTGTCTTCAATGGGTTCGTAGCCACGATCGATGTGATAAATACGa                      >  1:1029213/1‑149 (MQ=255)                                                                                                                                 aaaaaaTGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCCCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATc                    <  2:896492/149‑1 (MQ=255)                                                                                                                                               cTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATaaa                           <  2:375983/128‑1 (MQ=255)                                                                                                                                               cTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATaaa                           >  1:375983/1‑128 (MQ=255)                                                                                                                                                   cGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCTCCTTTCACACGTTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAACCACCGTCGTCCCTTc  <  1:512462/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAGGAGAGATGATTATTGCGAAAGCCCTGGGAACTGACCCCTGGGTTATCTGGCCATCACGCTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCC‑CGCGAACGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAACCACCGTCGTCCCTTC  >  NC_000913_3_pae_tpiA/3335051‑3335345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.