New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1207805	6 (0.100)	43 (0.810)	39/258	0.4	83.2%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_tpiA	= 1209602	12 (0.230)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTG  >  NC_000913_3_pae_tpiA/1209454‑1209750                                                                                                                                                      |                                                                                                                                                     cacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTAATCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTCATGCagag                                                                                                                                                      >  2:981962/1‑149 (MQ=255) cacGTAAATCAGGCAATTTATTTGGCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCCACAGGTAATGCagag                                                                                                                                                      <  2:798506/149‑1 (MQ=255)   cGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGcc                                                                                                                                                    >  1:691746‑M2/1‑147 (MQ=255)   cGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGGTCCGGGTATTCTTCAGCAGATAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTTGCGGGAAGGATGTAAGCAACGGAACCGGG‑ACACACACAGGAAATGACGAGcc                                                                                                                                                    >  1:289860/1‑149 (MQ=255)             gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGAAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGGTGAAGGCCACGCAACCGGG‑ACACCAACAGGTAATGCAGCGccttctccccac                                                                                                                                          <  2:332697‑M2/149‑13 (MQ=255)              cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaac                                                                                                                                         >  1:623424‑M2/1‑136 (MQ=255)                       tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCCGAAAAAGCAGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAGGGCCCCGGAACCGAG‑ACACGAACAGGAAATGCAGGCCATTCCCCCAAGCCAACGTTTa                                                                                                                                >  2:614022/1‑149 (MQ=255)                               aaGCCTTTGCCAGTTCCGGGTAGTCTTCAGGAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc                                                                                                                         >  2:833868‑M2/1‑120 (MQ=255)                                 gCCTTTGCCCGTTCCGGGTATTCTTCGGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaagccaaggttttcgagagccgt                                                                                                                      >  2:522931‑M2/1‑117 (MQ=255)                                 gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTCTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt                                                                                                                      <  1:264003‑M2/149‑33 (MQ=255)                                  ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGCCACCATTGCATTTCAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCCACGGAAGCGGG‑GCACAAACAGGTACTCCAGAGccttctcccaatccaaggttttcgagagccgtt                                                                                                                     <  2:911726‑M2/149‑34 (MQ=255)                                  ccTTTGACAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt                                                                                                                     >  2:601334‑M2/1‑116 (MQ=255)                                    tttGCCAGTTCCGGGTATTCTTCAGAAGAAAAAGCGGCAACATTGAATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATACGGAAccttctcccacacccaggtttgcgagagacatgta                                                                                                                   <  2:572329‑M2/149‑36 (MQ=255)                                      tGCCAGTTCCGGTTACTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                 >  1:591594‑M2/1‑112 (MQ=255)                                         cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgacagccgtttggaccg                                                                                                              <  2:306043‑M2/149‑41 (MQ=255)                                         cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttccagagccgcttgcacag                                                                                                              <  2:776174‑M2/149‑41 (MQ=255)                                           gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCTAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                            <  1:255177/149‑1 (MQ=255)                                            ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                           <  1:394992/149‑1 (MQ=255)                                              ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGGCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcggtttgcacagtgcca                                                                                                         <  2:865155‑M2/149‑46 (MQ=255)                                                gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgcgagccgtttgcacagtgacatc                                                                                                       <  2:458618‑M2/149‑48 (MQ=255)                                                gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                       >  2:887119/1‑149 (MQ=255)                                                gggTATTCCTCAGCAGAAAAAGCCGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                                                                                       >  1:189984‑M2/1‑102 (MQ=255)                                                        ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                           <  2:846145‑M2/121‑28 (MQ=255)                                                        ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                           >  1:846145‑M2/1‑94 (MQ=255)                                                            gcggACAAAGGGGCACAATTGTATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAAGGGAACCGGG‑ACACCAACAGGTAATGCAGATccttctcccacaccaaggttttcgggagccgtttgcacagtgccatccgatttgatatc                                                                                           >  2:403025‑M2/1‑90 (MQ=255)                                                                aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAAGCCACAGAACCGGG‑ACACCAACAGGTACTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccaatttgatatcgcca                                                                                       <  1:557397‑M2/149‑64 (MQ=255)                                                                         cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg                                                                              >  2:927347/1‑149 (MQ=255)                                                                             atttcatttcAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                          >  1:804354‑M2/1‑73 (MQ=255)                                                                              ttgcattgcaGCCAGCCTGTTTGGGGAGTGGCTGAATGTCACGTAAACGGG‑ACACCAACAGGTAAGGCAGAGccttctcaaaaaccaaggttttcgcgagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg                                                                         >  2:28738‑M2/1‑72 (MQ=255)                                                                              ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCAGG‑ACACCAACAGGTACTGCAGAAccttctcccaaaccaaggttttcgacagccttttgcacagtgccatccaatttgacatcccccaacggattcagccg                                                                         <  2:295269‑M2/149‑78 (MQ=255)                                                                                 cATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGTCCAGCGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGTGATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa                                                                      <  2:696029/149‑1 (MQ=255)                                                                                  aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                                     <  1:887119/149‑1 (MQ=255)                                                                                  aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                                     <  2:906319/149‑1 (MQ=255)                                                                                   tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccggttgcacagtgccatcggatttgatatcgccaaacggattcttgcggctta                                                                    <  1:660836‑M2/149‑83 (MQ=255)                                                                                    ttCAGTCAGCCTGTTGGCGGAGTGTCTGCAGGCTACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                   <  1:97952/149‑1 (MQ=255)                                                                                       agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacag                                                                >  1:868807‑M2/1‑63 (MQ=255)                                                                                       agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacag                                                                >  1:38229‑M2/1‑63 (MQ=255)                                                                                        gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaagtttttcgagagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagc                                                               <  2:789405‑M2/149‑88 (MQ=255)                                                                                          cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttccggcttaacagcag                                                             <  2:235850‑M2/149‑90 (MQ=255)                                                                                           agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagc                                                            >  1:567148‑M2/1‑59 (MQ=255)                                                                                                     cGGAGTGGCTGAAGTCCACGGATCCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtg                                                  >  1:887540‑M2/1‑49 (MQ=255)                                                                                                       gggtgGCTGAGGGCCACGGAACCGGG‑ACAACAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtggcatccgatttgatatcgcgcagcggattcttgcggcttaacagcagcgcgcgaagtgcg                                                >  2:270773‑M2/3‑47 (MQ=255)                                                                                                       gAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                                >  1:98136‑M2/1‑47 (MQ=255)                                                                                                       gAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGGAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                                >  1:515228‑M2/1‑47 (MQ=255)                                                                                                        aGTGGCAAAAGGCCACGGAACCGGA‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                               <  1:754919/149‑1 (MQ=255)                                                                                                              tGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGcctgctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagta                                         >  2:342466‑M2/1‑40 (MQ=255)                                                                                                               gAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa                                        >  1:945846‑M2/1‑39 (MQ=255)                                                                                                                   gCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                              <  1:1002318‑M2/123‑89 (MQ=255)                                                                                                                   gCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                              >  2:1002318‑M2/1‑35 (MQ=255)                                                                                                                     cACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacaccagcgcgcgaaatgcggtaagtaactggtc                                  <  1:571378‑M2/149‑117 (MQ=255)                                                                                                                                    acCAACAGGTAATGCAGGCccttctcccaaaccacgccagtcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttct                    <  2:700447‑M2/149‑131 (MQ=255)                                                                                                                                    acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                    <  1:619506/149‑1 (MQ=255)                                                                                                                                         cAGGTAATGCAGAGccttttcacaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg               >  2:777419‑M2/1‑14 (MQ=255)                                                                                                                                           ggTAATGCAGAGccttctcccaaaccaaggatttcgagagccgtttgcacagtgccatccgatgtgatctcgccaaacggattcttccggcttaacagcagcgcgcgaaatgcggtaagtaactggtcgttccgccccttatccagacc             <  2:927776‑M2/149‑138 (MQ=255)                                                                                                                                            gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacaccagcgcgcgaagttcggtaagtaactggtcgtgccgccccttctccaggctg            <  1:328015‑M2/149‑139 (MQ=255)                                                                                                                                                  cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggagtcttgcggcttaacagcagcgcgcgcatttctggaaggaaccggtcgngcanccccttctcaaggctggcaccc      <  1:864165‑M2/149‑145 (MQ=255)                                                                                                                                                  cAGAGccttctcccaaaccaaggttttcgagagccgtttgcaaagtgccatccgatttgatatcggcaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccg      >  2:896645‑M2/1‑5 (MQ=255)                                                                                                                                                   agcgccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttacggcttaacagcagcgcgcgaagtgcggtaagtaaatagtcgtgccaccccttctccaagctggcaccga     <  1:418260‑M2/149‑146 (MQ=255)                                                                                                                                                    gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccgga    <  2:142221‑M2/149‑147 (MQ=255)                                                                                                                                                     agccttctcccaaaccaaggttttcgagagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacaccagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggat   >  2:912199‑M2/1‑2 (MQ=255)                                                                                                                                                      gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg  <  1:796835/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTG  >  NC_000913_3_pae_tpiA/1209454‑1209750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.