| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1952909 = | 23 (0.790) | 5 (0.180) | 5/268 | 3.2 | 18.9% | coding (208/744 nt) | cmoA | carboxy‑SAM synthase |
| ? | NC_000913_3_pae_tpiA | 1952930 = | 21 (0.760) | coding (229/744 nt) | cmoA | carboxy‑SAM synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATT > NC_000913_3_pae_tpiA/1952762‑1953055 | gatgaACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCgcggc < 1:513773/149‑1 (MQ=255) gaACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGAc > 2:322148/1‑149 (MQ=255) gCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTTCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGt < 2:76696/149‑1 (MQ=255) cccGGATATCATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACa < 1:138004/149‑1 (MQ=255) tatGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑tcatc > 1:172178/1‑149 (MQ=255) tCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCACCAT‑TCATCATggt > 1:183465/1‑147 (MQ=255) cGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTg < 2:172178/149‑1 (MQ=255) ctaaTATTACTGCCAGGATTGTATTGTTAGCTCAGCGCTTCGTTCTCCCGGCTACGCCGGTGTACGATTTGTGTTGTTTCTTTGTCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGAc < 2:84767/147‑1 (MQ=255) ccAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGAc > 1:165826/1‑149 (MQ=255) tattatTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGCTCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCTTCCCATCAT‑TCTTCATGATAATTGAACAACTATCTCAATCGTCAACt > 2:468529/1‑149 (MQ=255) cATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCga > 1:441853/1‑149 (MQ=255) tgtttGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCgatg < 2:333060/146‑1 (MQ=255) tGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCgatg > 1:57380/1‑149 (MQ=255) gTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAC‑TCAACATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATCGAACGCt > 2:456734/1‑149 (MQ=255) gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAAAAT‑TCATCATGAAAATTGCAAAATTATTGCAATCGCCAACTCCCCGGCGATGATTGAACGCTGCggtcg > 2:406733/1‑149 (MQ=255) cAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGAGGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGc < 2:13356/149‑1 (MQ=255) cTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATTATTGAACGCTGCCGTCGTCATATTGACGCCtat > 1:390198/1‑149 (MQ=255) aCGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGc < 1:322148/149‑1 (MQ=255) aCGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGc < 1:194635/149‑1 (MQ=255) ctctGGGCGCGGCGACGCTCTCGGTG‑GTCGCCGTATCTTTAAAAAAAAATGGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGACCGCTGCACTCATCATAATGACACCTATAAAGCCCCTACGCCAGTACACGCCATTGaa > 2:300113/1‑149 (MQ=255) gcgcGGCTACGCTCTCGGGGCGTGGCAACAT‑TCATCATGATAATTGCAAAATTATAGCCATCGACAACTCCCCGGCGAGGATTGAACGCTGCCGTCGTCATATTGACGCCTGTAAAGCCCCTACACCAGTATACGTCATTGAAGGTGat > 1:475601/1‑149 (MQ=255) cgcgGCGACGCTCTCGGTGCGTCGCAACAT‑ACATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGata > 2:22760/1‑149 (MQ=255) cggcgACGCTCTCGGTGCGTCGCAACAC‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTACCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGACAGTAGCCGTCATTGAAAGTGATAtt > 2:11237/1‑149 (MQ=255) | GATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCGGTGCGTCGCAACAT‑TCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATT > NC_000913_3_pae_tpiA/1952762‑1953055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |