| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3082756 = | 30 (1.060) | 4 (0.150) | 4/268 | 3.4 | 12.6% | noncoding (67/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_tpiA | 3082788 = | 27 (1.010) | noncoding (99/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGCGTTGCCGCTGC > NC_000913_3_pae_tpiA/3082645‑3082936 | ggCATGGGCGCGGATGGGATTAAGGAAAGGCTGGTGGGGTGGAACGTAGGTCGGATAAGGCGTTCCCGCCGCCTCTGCCCTTTATGGGACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACgg < 2:332228/148‑1 (MQ=37)cGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACgg < 2:350322/149‑1 (MQ=255) gCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGAGGCGCTGCTGCCGCATCTTATCCGGCCTACggg > 1:282647/1‑149 (MQ=255) tGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGc < 2:24029/149‑1 (MQ=255) tGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAgg < 1:387265/149‑1 (MQ=255) aaccTGGTGGCGCCGGAGGGAGGTGAGAAAAGGCGTTCCCGCCGCATCTGACAGGAAGGGCACAGTTGTTACCTTGTTCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGt < 2:308360/147‑1 (MQ=37) gAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCg > 1:306603/1‑149 (MQ=255) gTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCTGTCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAAt < 2:161221/149‑1 (MQ=255) gTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAAt < 1:213561/149‑1 (MQ=255) tAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCAc < 1:6805/125‑1 (MQ=255) tAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCAc > 2:6805/1‑125 (MQ=255) ggCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGttt > 1:169356/1‑149 (MQ=255) cGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGACGCCACG‑AGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTa < 1:471448/149‑1 (MQ=39) gTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTAc < 1:371116/149‑1 (MQ=255) aCGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AGCGTAGTTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGt < 1:351023/149‑1 (MQ=255) gACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGTATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGcgcatcgcat > 2:105976/1‑149 (MQ=255) aTGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCt < 2:461596/148‑1 (MQ=255) aTGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCt > 1:461596/1‑148 (MQ=255) tGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGAATACCACATTCATGGGACGTTTTACCCGTGCGCATCGCATCTGGTGCt > 1:265983/1‑149 (MQ=39) acaTTTGTTACCTGGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACt < 2:291183/149‑1 (MQ=255) aTTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCg > 1:41507/1‑149 (MQ=255) cTTGTGGGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTc < 1:203636/149‑1 (MQ=255) gcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCATACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCTTCTGGTGCTTATTCGCCCTTTTTCGCCCCCt > 1:176863/1‑149 (MQ=255) atgcTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGGCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATCCAGCAttt > 1:45703/1‑149 (MQ=255) gcTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTcc < 2:142520/149‑1 (MQ=255) gcATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTccagcccc > 2:196944/1‑149 (MQ=255) aTCTTATCCGGCCTACGGGTGCCG‑CACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTAGCCCTTTTTCTCCGCCTTCATATCCAGCACTTccaacgccca > 2:378452/1‑147 (MQ=38) tCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGTGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGCGTTGc > 2:417688/1‑149 (MQ=255) ccGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGCGTTGcc < 1:437910/149‑1 (MQ=255) ggCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGAGTTGCCGc > 1:184768/1‑149 (MQ=255) cTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGCGTTGCCGCTGc > 1:366728/1‑149 (MQ=255) | CGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCTGAATATACAGCATTTCCAGCGCCAGCGTTGCCGCTGC > NC_000913_3_pae_tpiA/3082645‑3082936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |