New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2814163 =	36 (0.990)	4 (0.120)	4/264	4.6	11.1%	intergenic (+9/+55)	emrB/luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
	?	NC_000913_3_pae_tpiA	2814187 =	31 (0.920)					intergenic (+33/+31)	emrB/luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCAATCAGGGGCTGATTATTTCCGCCAATGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCA  >  NC_000913_3_pae_tpiA/2814020‑2814308                                                                                                                                                  |                                                                                                                                                  aCCAATCAGGGGCTGATTATTTCCGCCAATGAGCAATTTCT‑TATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTACGCCa                                                                                                                                              >  2:432773/1‑149 (MQ=255)             cTGATTATTTCCGCCAATGAG‑ATCTTCTGGAGGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAAc                                                                                                                                  <  2:189732/149‑1 (MQ=255)                      ttcGCCAGTGAG‑ATCTTCCGGATGTAAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCttagt                                                                                                                         <  2:416476/147‑4 (MQ=255)                       ccGCAAATGAG‑ATCTTTTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCtttttt                                                                                                                        <  2:84863/149‑1 (MQ=255)                         gCCAATGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTAGAAAGGATGGCTAAACCTCCATTTGGCGCAGGCGGCGGCGGAGGCGGTG‑CGCACTCAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCa                                                                                                                      >  2:520443/1‑149 (MQ=255)                          ccAATGAG‑CTCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaa                                                                                                                     <  1:570550/149‑1 (MQ=255)                            aaTGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGc                                                                                                                              >  1:364124/1‑138 (MQ=255)                            aaTGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGc                                                                                                                              <  2:364124/138‑1 (MQ=255)                            aaTGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaatt                                                                                                                   >  1:466002/1‑149 (MQ=255)                                               tCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTa                                                                                                 <  1:466805/149‑1 (MQ=255)                                                   ccGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGa                                                                                             >  2:533438/1‑149 (MQ=255)                                                      ggctgttCCTCGTCCCGCTGTGGCTGGTGTGGTTGGCTAAACCGCCATTTGGCGCGGGTGGCGGCGGAGGCGGTG‑CGCACTTAGTACAACTGCGCCACTTCGTTTGAACTGGCTTTTTTCAATTAATTGTGACGATAGTTTACTGCCtc                                                                                          >  2:226537/6‑148 (MQ=255)                                                         tatGCCTCGTCCTGCTGTGGCTGGTGTGGTTTGCTAAGCCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCCAGCAGTGGTGAAGTTAGTTTGCTGACTAGAt                                                                                       <  2:463059/149‑1 (MQ=255)                                                            tCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtgtg                                                                                    >  1:246992/1‑149 (MQ=255)                                                                  tCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTCCCATCGGTTGTGAAGATAGTTTACTGACTAGATGTGCAGTTc                                                                              <  1:477619/149‑1 (MQ=255)                                                                   ccTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCCGC‑ACGGCCTTGTCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTcc                                                                             <  1:311177/149‑1 (MQ=255)                                                                    cggcgggggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCt                                                                            <  2:447325/144‑1 (MQ=255)                                                                      gctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGc                                                                          <  2:627140/149‑1 (MQ=255)                                                                       ctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCa                                                                         >  2:306912/1‑149 (MQ=255)                                                                        tgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCaa                                                                        <  1:105936/149‑1 (MQ=255)                                                                                gtgtGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTAATGACTAGATGTGCAGTTCCTGCAACTTCTCtt                                                                >  2:76487/1‑149 (MQ=255)                                                                                   ttgTTTGGTAAACCGCTATTTGGGGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCg                                                             <  1:164132/147‑1 (MQ=255)                                                                                        tGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGt                                                        <  1:533438/149‑1 (MQ=255)                                                                                         gCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTg                                                       >  2:548505/1‑149 (MQ=255)                                                                                             aaCCGCCATTTGGCGCAGGTGGCGGTGTAGGCGGTG‑CGCACTAAGTACAACGACGCCAGTCCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTTCAACTTCTCTTTCGGCAGTGCCAg                                                   <  2:203758/149‑1 (MQ=255)                                                                                                   taTTTGGCGCAGGTGGCGGCGGATGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTTCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                             <  1:27918/148‑1 (MQ=255)                                                                                                   cATTTGGCTCAGGTGGCGGCGGAGGCGTTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                             <  1:374230/149‑1 (MQ=255)                                                                                                   cATTTGGCGGAGGTGGGGGGGGAGGCGGTT‑GGCAGTAAGGACAACTAATGCAGTTCATTTCGACTGGCTTTTTTCAACTAATTGTGAAGCTAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                             <  2:325467/149‑1 (MQ=255)                                                                                                   cATTGGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                             <  2:536404/149‑1 (MQ=255)                                                                                                               ggggcggcCGGAGCGGGT‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAACTAATTGTGAAGATAGTTTACTGAGTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCTAGTTCTTCGTTGCTGTTGAt                                 <  2:23977/147‑1 (MQ=255)                                                                                                                 ggcggcCGAGGCGGTG‑CGCACTAAGTATAACTAAGGCAGTTCATTTGAACTTGCTTTTTTCGATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGc                               <  1:523025/149‑1 (MQ=255)                                                                                                                              gTG‑CGCACTAAGTACAACTAAGCCAGTTCAGTTGAACTGGCTTTTTTCAATTAATTGTAAAGATAGTGTACTGACTACATGTGCAGTTCCTGCGACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTc                  >  2:5427/1‑149 (MQ=255)                                                                                                                                     aCTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTCCGTCACGTTCCAGAAt            >  1:382419/1‑149 (MQ=255)                                                                                                                                         aGTACAATTAAGCCGGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTa        <  2:538304/149‑1 (MQ=255)                                                                                                                                          gTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTAc       <  2:469211/149‑1 (MQ=255)                                                                                                                                           tACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCACCTTCTCTTTCGTCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTAcg      >  2:171972/1‑149 (MQ=255)                                                                                                                                               aaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCa  >  1:391834/4‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ACCAATCAGGGGCTGATTATTTCCGCCAATGAG‑ATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCA  >  NC_000913_3_pae_tpiA/2814020‑2814308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.