| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 349969 | NA (NA) | 6 (0.190) +CTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCG |
4/166 | 4.8 | NA | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 349972 | NA (NA) | intergenic (+400/‑40) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATACGGCGCTCTGCACCGT > NC_000913_3_pae_tpiA/349830‑350115 | ttGCACGGAACTGTAGGTCGGACAAGACGCATAGCGTCGCATCCGACAACCGATGACTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAAtctc < 1:8494/148‑1 (MQ=255)gTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAAtctc < 2:723614/149‑1 (MQ=38) gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTTGCATCCGACAACAATCTCGa > 2:25282/1‑149 (MQ=255) cattggaCTGTAGGGGCGATAAGACGGATGGCCACGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGAc < 2:32174/143‑1 (MQ=11) cACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGAc > 1:531970/1‑149 (MQ=39) cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGAccc < 2:929236/149‑1 (MQ=255) cgTAGGCCGGATGAGACGCATAGCGTCGCATCCGACAACCGATGCCGGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACaaa < 1:247412/148‑1 (MQ=255) agttCGGACAAGACGCCTAGCGTCCCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGa < 1:287392/146‑1 (MQ=255) tCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATaa < 1:880833/149‑1 (MQ=255) aTAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACCGAACTGTAGGTCGGATAAG‑ACGCATAGCGTTGCATCCGACAACAATCTCGACCCTACAAATGATAACAAt < 1:25282/149‑1 (MQ=255) aaGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGa < 1:632729/149‑1 (MQ=255) aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGTGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGAACGC‑TACTGGCATGTCCGCCAACAATCCCTACCCTACAAATGGTAACAATGACGa > 1:685219/1‑149 (MQ=14) aCGCAACGCGCCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGa < 2:881291/149‑1 (MQ=255) gctatgCGTCTTATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAgg > 2:678738/6‑149 (MQ=255) ggCGTCGCATCCGACAACCGATGCCTGATGCGCCACTGACGCGACTTATCAGGCCTACGGGGTCAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGacaa < 1:833519/148‑1 (MQ=255) aGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATg < 1:526875/130‑1 (MQ=255) aGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATg > 2:526875/1‑130 (MQ=255) tCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGCTAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGa < 2:753735/136‑1 (MQ=255) tCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGCTAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGa > 1:753735/1‑136 (MQ=255) cATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGc < 1:752638/149‑1 (MQ=255) cATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGc > 2:746611/1‑149 (MQ=255) tCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGa < 2:602727/149‑1 (MQ=255) ccgcgaaCCGATGCCTGATGCGCCGCTGACCCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGCTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGac < 2:808914/144‑1 (MQ=255) cGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGaca < 1:933519/149‑1 (MQ=255) cGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGAt < 1:678738/149‑1 (MQ=255) tGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGGTAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACaa > 1:504580/1‑112 (MQ=255) tGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACaa < 2:504580/112‑1 (MQ=255) gccgcTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACAAAACGATCCTGCAAAACAGt > 2:568935/1‑149 (MQ=255) gcgcTGACGCGACTTATCAGGCGTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTa < 2:126027/148‑1 (MQ=255) gcTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTAcc < 1:931129/149‑1 (MQ=255) cgACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATcc < 2:903548/128‑1 (MQ=255) cgACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATcc > 1:903548/1‑128 (MQ=255) aCTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACGTGGCCGACACAACGATCCTGCAAAACAGTACCCATGTCAtt < 2:630486/149‑1 (MQ=255) ttATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTaa > 2:492661/1‑149 (MQ=255) aTCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAAc < 2:278916/149‑1 (MQ=255) cTACGGGGTGAACTGAACTGTAGGTCGGCTAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGGGGGCCACACCGATCCTGCAGAAGATTCCCCATGCCATTAAAACCaaaca > 2:204961/1‑147 (MQ=25) gctgaactgaacTGTAAGCCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCtgt < 1:447442/147‑1 (MQ=255) tgaactgaacTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTgg < 2:22688/149‑1 (MQ=255) gcgTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTg < 1:448352/147‑1 (MQ=255) ctgTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTg < 2:491275/149‑1 (MQ=255) ctgTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTg > 1:491275/1‑149 (MQ=255) ctgGAGGGCGGATAAG‑ACGCAGAGCGACGCACCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTg < 2:919231/149‑1 (MQ=255) gTAGGTCGGATAAG‑ACGCATCGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGc < 1:303489/149‑1 (MQ=255) gTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGc < 2:295763/149‑1 (MQ=255) aGGTCGGATAAG‑ACGCATAGCGTCGCAGCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAACAATCTGTGGCACTTTCTGGCGt < 2:932142/149‑1 (MQ=255) aTAAC‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCCACAAATGAGAAAAATGACGCGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATCGCATTAAACCGAAAGAATCTGTGACACTTTCTGTCGCTcctacg > 2:376583/1‑145 (MQ=255) aCGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCCCTTTCTGGCGTTCCGGCGGGCaa > 2:49542/1‑149 (MQ=255) aCGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCaa > 1:383137/1‑149 (MQ=255) gCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATa < 1:65792/149‑1 (MQ=255) tgaGCGTCGGAGCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATACg < 2:134390/147‑1 (MQ=255) gCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACAATCCTGCAAAACAGAACCCATGTCATTAAACCAAAAAAATCTGTGGCACTTTCTGGCGTTCCCGCGGGCAATACGgcg > 2:200978/1‑149 (MQ=255) cGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATACGgcgc < 2:531970/149‑1 (MQ=255) gACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCAACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATACGGCGCTCTGCACCGt > 2:329326/1‑149 (MQ=255) | GTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAG‑ACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGATCCTGCAAAACAGTACCCATGTCATTAAACCGAAAAAATCTGTGGCACTTTCTGGCGTTCCGGCGGGCAATACGGCGCTCTGCACCGT > NC_000913_3_pae_tpiA/349830‑350115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |