New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1207790 =	93 (0.790)	17 (0.160)	16/248	9.6	14.9%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_tpiA	1209619 =	112 (1.070)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913_3_pae_tpiA/1207646‑1207937                                                                                                                                                  |                                                                                                                                                     gCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGt                                                                                                                                                  >  1:987977/1‑149 (MQ=255) gCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGACACGACTAGTTAATTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCGCGACAACCTTGGt                                                                                                                                                  >  2:1909177/1‑149 (MQ=18)   gtggtgGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt                                                                                                                                                >  1:1891170/1‑149 (MQ=255)     ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCCCGACTAGTTACATTCCTCACTTCG‑CGCGATCCTCTGAAGCCAGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                              <  2:1575408/149‑1 (MQ=17)     ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                              <  1:798510/149‑1 (MQ=255)     ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                              <  2:170119/149‑1 (MQ=255)      gtggCGGCAGTCGGTGACAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                             <  2:1100104/149‑1 (MQ=255)      gtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                             <  1:1639359/149‑1 (MQ=255)          aGGCATCCGGTGCCAGCCTGTGGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                                         <  1:1054632/149‑1 (MQ=255)          aGGCATCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                                         <  2:1447279/149‑1 (MQ=255)             cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGa                                                                                                                                     <  2:1891170/149‑1 (MQ=255)                 cGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCaa                                                                                                                                 >  1:1225870/1‑149 (MQ=255)                    tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAAc                                                                                                                              <  2:129671/149‑1 (MQ=255)                     gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACt                                                                                                                             <  2:822498/149‑1 (MQ=255)                        aggcTGGAGAAGGGGGGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                          <  1:1831428/146‑1 (MQ=255)                        aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                          <  2:1098782/149‑1 (MQ=255)                        aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                          <  2:1435811/149‑1 (MQ=255)                          ccTGGAAAAGGGGCCGAACGACCAGTTACTTACCGCATTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATg                                                                                                                        <  2:1128116/149‑1 (MQ=18)                           cTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATgc                                                                                                                       >  2:1798651/1‑149 (MQ=255)                              gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                          >  2:16655/1‑143 (MQ=255)                              gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                          <  1:16655/143‑1 (MQ=255)                                 aaGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                 >  1:1939885/1‑149 (MQ=255)                                    gggCGGCACGACCATTTAGTTACCGCACTTCG‑CGCGTCGCTGTTAAGCCGCAAGAATCCGTTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTTGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGc                                                                                                              <  2:340603/149‑1 (MQ=21)                                    gggCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGc                                                                                                              >  1:1400761/1‑149 (MQ=255)                                    gggCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGAAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGGGAA‑GGAGCAAAACTCAATGCAGCAACggg                                                                                                              >  1:563760/1‑148 (MQ=255)                                      gcggcACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                            <  1:1782266/149‑1 (MQ=255)                                      gcggaACGATCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCCCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑TGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                            <  1:1911085/149‑1 (MQ=21)                                           aCGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                       <  1:370733/149‑1 (MQ=255)                                             gACCAGTTACTTACCGCACTTCGACAGAATGTTG‑AAAGCCGCAAGAATCCGTTAGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTCGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                     >  2:1502818/1‑149 (MQ=255)                                             gACCAGGTACTTGCCGGACTGCG‑CGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                     <  2:1681821/149‑1 (MQ=25)                                                       ttacCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAACCTCAATGCGGATGCGGCTACATTAGGACGCATCGGt                                                                                           >  1:477139/1‑149 (MQ=21)                                                           cGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCtt                                                                                                                                                     >  2:908963/1‑88 (MQ=255)                                                           cGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCtt                                                                                                                                                     <  1:908963/88‑1 (MQ=255)                                                           cGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                       >  2:1928418/1‑149 (MQ=255)                                                               cTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                   <  2:1695923/149‑1 (MQ=255)                                                                     cgcggTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAAGGAAGGTAGAA‑GGAGCACAACTCCATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                              <  1:61159/149‑1 (MQ=25)                                                                        gtggctgGTACGCGGCAAGAATCCGTTTGGCGATATCAAATCGGGTGGCACTGTGCAAAGTGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACGCAATGCAGCAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCgg                                                                           <  1:1952621/146‑1 (MQ=25)                                                                        gctggtTTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                           <  2:848152/149‑1 (MQ=255)                                                                         ctgctgGTAAGCCGCAAGCATCCGTGTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCATCAACGGCTACATTAGGTCGCACCGGTTTCATAGCTATACCGGt                                                                          <  1:447872/149‑1 (MQ=25)                                                                          tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                         >  2:123472/1‑149 (MQ=255)                                                                           gctgTTAAGCCGTAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                        <  1:868932/149‑1 (MQ=255)                                                                            ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACAGCTCTCGAAAACCTTTGATTGGGGGAA‑GGAGCAAAACTCAATGCAGGAACAGCCACAGTAGGAAGAACAGGTTTCATAACTATACCGGTTAt                                                                       >  2:170965/1‑149 (MQ=21)                                                                                tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATACAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt                                                                   <  1:409389/149‑1 (MQ=255)                                                                                  aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                 <  1:1367258/149‑1 (MQ=255)                                                                                   gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                >  1:737068/1‑149 (MQ=255)                                                                                    ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGA‑GGAGCAAAACTCAATGCAGCAACGGCTGCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                               >  2:1437786/1‑149 (MQ=255)                                                                                    ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                               <  1:1510429/149‑1 (MQ=255)                                                                                      gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                             <  1:595071/133‑1 (MQ=255)                                                                                      gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                             >  2:595071/1‑133 (MQ=255)                                                                                           aagccGGTTGGTGATAATAAATCGGATGGCACTGAGCAAGTTGGTCTGGCAATCCTTGGTTGGGGAGAA‑GGAGCAAATCCCAATTCAGCAACGGTTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                        <  2:1792321/146‑1 (MQ=255)                                                                                            aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                 >  2:501433/1‑91 (MQ=255)                                                                                            aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                 <  1:501433/91‑1 (MQ=255)                                                                                                     gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTAAGTGTGTA‑TGAGCAAAATTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                              <  1:398974/149‑1 (MQ=255)                                                                                                      cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGATCAAAACTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCAACCacaaa                                             >  2:1816571/1‑145 (MQ=38)                                                                                                        atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc                                           >  1:1144777/1‑149 (MQ=255)                                                                                                          atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAt                                         <  1:1928418/149‑1 (MQ=255)                                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                        >  2:487728/1‑149 (MQ=255)                                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTTATGGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                        >  1:1214346/1‑149 (MQ=255)                                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                        >  1:1775433/1‑149 (MQ=255)                                                                                                               aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                 <  2:1162189/72‑1 (MQ=255)                                                                                                               aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                 >  1:1162189/1‑72 (MQ=255)                                                                                                                tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGtt                                   <  1:2067774/149‑2 (MQ=255)                                                                                                                 cGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                  <  1:375012/149‑1 (MQ=255)                                                                                                                  ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                 <  1:1728938/149‑1 (MQ=255)                                                                                                                  ggATGGCACTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                 <  2:1069813/149‑1 (MQ=255)                                                                                                                   gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                <  2:1481150/149‑1 (MQ=255)                                                                                                                   gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                >  1:1481150/1‑149 (MQ=255)                                                                                                                     tGGGACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCATTgggttt                              <  2:1814973/149‑4 (MQ=255)                                                                                                                        cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACCTTCGGACGCACCGGTCTCATAGCGATACCGGTTATGATTGGTGGAATTGAGCAATCAGTAATCATTCAGTGGGGGTGGa                           >  1:1851724/1‑149 (MQ=255)                                                                                                                         aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                          <  1:123472/149‑1 (MQ=255)                                                                                                                           tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGGGCAATCAGTAATCATTCAGTGGGGGTGGAATg                        >  1:351762/1‑149 (MQ=255)                                                                                                                           tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                        >  1:337411/1‑149 (MQ=255)                                                                                                                                aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAACAGACCGGAA‑GCGATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCa                   >  1:503620/1‑149 (MQ=255)                                                                                                                                 aaCGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGcca                  >  1:193343/1‑147 (MQ=255)                                                                                                                                   cGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTTCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                <  1:88382/149‑1 (MQ=255)                                                                                                                                     gCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc              >  2:2055823/1‑149 (MQ=255)                                                                                                                                       tctcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACCTTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGCGGTAATGAGCAGACAGTAATCATTCAGTGGGGGTGAAATGCGGCCAAAGCAt            >  1:1330523/1‑149 (MQ=255)                                                                                                                                       tctcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt            >  2:1996907/1‑149 (MQ=255)                                                                                                                                         tcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCATCt          >  2:279991/1‑149 (MQ=255)                                                                                                                                         tcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAACGCATCt          >  1:1934846/1‑149 (MQ=255)                                                                                                                                           gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  1:885413/1‑149 (MQ=255)                                                                                                                                           gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  1:596070/1‑149 (MQ=255)                                                                                                                                           gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        <  2:1400761/149‑1 (MQ=255)                                                                                                                                           gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAACCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  1:1167360/1‑149 (MQ=255)                                                                                                                                           gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGTGGTATTGACCAATCAGTAATAATTCAATAGGGGTGGAATGCAGCAAAAGACTCTGc        >  2:905185/1‑149 (MQ=255)                                                                                                                                              acacTTGGTTTGGGAGAA‑GGAGCAAAACTCAGTGTAGGAACGGCTGATTTAGGAACAAACGGTTTAATAGCTATACGGATTCGCATTGATGGTATTGAGCAATAAGTAATGATTTAGAAGGAGTTGAATGCTGAACAAGCATCTGcgtt     >  2:1512624/4‑146 (MQ=255)                                                                                                                                               aCCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAACCTTCGGTGGGGGTGGAATGCCGCAAAAGCATCTGCctct    >  1:577188/1‑149 (MQ=255)                                                                                                                                               aCCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATCGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCCAACGCATCCGCctcc    >  1:1477677/1‑148 (MQ=255)                                                                                                                                                 cTTGGTTTGGGAGAA‑GGCGCAAAACTCAATGCACCATCGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGGTATTATTGGTGGGATTGAGCAATCAGTAATCACTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg  <  1:1030434/149‑1 (MQ=255)                                                                                                                                                 cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTGATAGCTCTACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATGCCGCAGAAGCATCTGCCTCTgc  >  2:525428/1‑148 (MQ=255)                                                                                                                                                 cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg  >  1:1916722/1‑149 (MQ=255)                                                                                                                                                 cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg  >  1:321986/1‑149 (MQ=255)                                                                                                                                                 cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg  >  2:1148535/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913_3_pae_tpiA/1207646‑1207937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.