New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1207805	96 (0.820)	19 (0.180)	18/248	8.8	16.4%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_tpiA	= 1209602	109 (1.050)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATAC  >  NC_000913_3_pae_tpiA/1207658‑1207952                                                                                                                                                      |                                                                                                                                                    cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGa                                                                                                                                                    <  2:1891170/149‑1 (MQ=255)     cGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCaa                                                                                                                                                >  1:1225870/1‑149 (MQ=255)        tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAAc                                                                                                                                             <  2:129671/149‑1 (MQ=255)         gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACt                                                                                                                                            <  2:822498/149‑1 (MQ=255)            aggcTGGAGAAGGGGGGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                                         <  1:1831428/146‑1 (MQ=255)            aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                                         <  2:1098782/149‑1 (MQ=255)            aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                                         <  2:1435811/149‑1 (MQ=255)              ccTGGAAAAGGGGCCGAACGACCAGTTACTTACCGCATTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATg                                                                                                                                       <  2:1128116/149‑1 (MQ=18)               cTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATgc                                                                                                                                      >  2:1798651/1‑149 (MQ=255)                  gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                                         >  2:16655/1‑143 (MQ=255)                  gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCaa                                                                                                                                         <  1:16655/143‑1 (MQ=255)                     aaGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                                >  1:1939885/1‑149 (MQ=255)                        gggCGGCACGACCATTTAGTTACCGCACTTCG‑CGCGTCGCTGTTAAGCCGCAAGAATCCGTTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTTGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGc                                                                                                                             <  2:340603/149‑1 (MQ=21)                        gggCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGc                                                                                                                             >  1:1400761/1‑149 (MQ=255)                        gggCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGAAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGGGAA‑GGAGCAAAACTCAATGCAGCAACggg                                                                                                                             >  1:563760/1‑148 (MQ=255)                          gcggcACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                                           <  1:1782266/149‑1 (MQ=255)                          gcggaACGATCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCCCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑TGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                                           <  1:1911085/149‑1 (MQ=21)                               aCGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                                      <  1:370733/149‑1 (MQ=255)                                 gACCAGTTACTTACCGCACTTCGACAGAATGTTG‑AAAGCCGCAAGAATCCGTTAGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTCGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                                    >  2:1502818/1‑149 (MQ=255)                                 gACCAGGTACTTGCCGGACTGCG‑CGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                                    <  2:1681821/149‑1 (MQ=25)                                           ttacCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAACCTCAATGCGGATGCGGCTACATTAGGACGCATCGGt                                                                                                          >  1:477139/1‑149 (MQ=21)                                               cGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                                      >  2:1928418/1‑149 (MQ=255)                                                   cTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                                  <  2:1695923/149‑1 (MQ=255)                                                         cgcggTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAAGGAAGGTAGAA‑GGAGCACAACTCCATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                                             <  1:61159/149‑1 (MQ=25)                                                            gtggctgGTACGCGGCAAGAATCCGTTTGGCGATATCAAATCGGGTGGCACTGTGCAAAGTGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACGCAATGCAGCAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                          <  1:1952621/146‑1 (MQ=25)                                                            gctggtTTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                          <  2:848152/149‑1 (MQ=255)                                                             ctgctgGTAAGCCGCAAGCATCCGTGTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCATCAACGGCTACATTAGGTCGCACCGGTTTCATAGCTATACCGGt                                                                                         <  1:447872/149‑1 (MQ=25)                                                              tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                        >  2:123472/1‑149 (MQ=255)                                                               gctgTTAAGCCGTAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                       <  1:868932/149‑1 (MQ=255)                                                                ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACAGCTCTCGAAAACCTTTGATTGGGGGAA‑GGAGCAAAACTCAATGCAGGAACAGCCACAGTAGGAAGAACAGGTTTCATAACTATACCGGTTAt                                                                                      >  2:170965/1‑149 (MQ=21)                                                                    tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATACAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt                                                                                  <  1:409389/149‑1 (MQ=255)                                                                      aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                <  1:1367258/149‑1 (MQ=255)                                                                       gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                               >  1:737068/1‑149 (MQ=255)                                                                        ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGA‑GGAGCAAAACTCAATGCAGCAACGGCTGCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                              >  2:1437786/1‑149 (MQ=255)                                                                        ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                              <  1:1510429/149‑1 (MQ=255)                                                                          gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                                            <  1:595071/133‑1 (MQ=255)                                                                          gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                                            >  2:595071/1‑133 (MQ=255)                                                                               aagccGGTTGGTGATAATAAATCGGATGGCACTGAGCAAGTTGGTCTGGCAATCCTTGGTTGGGGAGAA‑GGAGCAAATCCCAATTCAGCAACGGTTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                       <  2:1792321/146‑1 (MQ=255)                                                                                aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                                <  1:501433/91‑1 (MQ=255)                                                                                aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                                >  2:501433/1‑91 (MQ=255)                                                                                         gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTAAGTGTGTA‑TGAGCAAAATTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                                             <  1:398974/149‑1 (MQ=255)                                                                                          cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGATCAAAACTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCAACCacaaa                                                            >  2:1816571/1‑145 (MQ=38)                                                                                            atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc                                                          >  1:1144777/1‑149 (MQ=255)                                                                                              atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAt                                                        <  1:1928418/149‑1 (MQ=255)                                                                                               tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                       >  2:487728/1‑149 (MQ=255)                                                                                               tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTTATGGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                       >  1:1214346/1‑149 (MQ=255)                                                                                               tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                       >  1:1775433/1‑149 (MQ=255)                                                                                                   aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                                >  1:1162189/1‑72 (MQ=255)                                                                                                   aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAAc                                                                                                                                <  2:1162189/72‑1 (MQ=255)                                                                                                    tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGtt                                                  <  1:2067774/149‑2 (MQ=255)                                                                                                     cGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                                 <  1:375012/149‑1 (MQ=255)                                                                                                      ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                                <  1:1728938/149‑1 (MQ=255)                                                                                                      ggATGGCACTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                                <  2:1069813/149‑1 (MQ=255)                                                                                                       gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                               <  2:1481150/149‑1 (MQ=255)                                                                                                       gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                               >  1:1481150/1‑149 (MQ=255)                                                                                                         tGGGACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCATTgggttt                                             <  2:1814973/149‑4 (MQ=255)                                                                                                            cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACCTTCGGACGCACCGGTCTCATAGCGATACCGGTTATGATTGGTGGAATTGAGCAATCAGTAATCATTCAGTGGGGGTGGa                                          >  1:1851724/1‑149 (MQ=255)                                                                                                             aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                         <  1:123472/149‑1 (MQ=255)                                                                                                               tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGGGCAATCAGTAATCATTCAGTGGGGGTGGAATg                                       >  1:351762/1‑149 (MQ=255)                                                                                                               tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                                       >  1:337411/1‑149 (MQ=255)                                                                                                                    aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAACAGACCGGAA‑GCGATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCa                                  >  1:503620/1‑149 (MQ=255)                                                                                                                     aaCGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGcca                                 >  1:193343/1‑147 (MQ=255)                                                                                                                       cGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTTCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                               <  1:88382/149‑1 (MQ=255)                                                                                                                         gCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                             >  2:2055823/1‑149 (MQ=255)                                                                                                                           tctcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACCTTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGCGGTAATGAGCAGACAGTAATCATTCAGTGGGGGTGAAATGCGGCCAAAGCAt                           >  1:1330523/1‑149 (MQ=255)                                                                                                                           tctcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                           >  2:1996907/1‑149 (MQ=255)                                                                                                                             tcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCATCt                         >  2:279991/1‑149 (MQ=255)                                                                                                                             tcGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAACGCATCt                         >  1:1934846/1‑149 (MQ=255)                                                                                                                               gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                       <  2:1400761/149‑1 (MQ=255)                                                                                                                               gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                       >  1:596070/1‑149 (MQ=255)                                                                                                                               gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                       >  1:885413/1‑149 (MQ=255)                                                                                                                               gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAACCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                       >  1:1167360/1‑149 (MQ=255)                                                                                                                               gAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGTGGTATTGACCAATCAGTAATAATTCAATAGGGGTGGAATGCAGCAAAAGACTCTGc                       >  2:905185/1‑149 (MQ=255)                                                                                                                                  acacTTGGTTTGGGAGAA‑GGAGCAAAACTCAGTGTAGGAACGGCTGATTTAGGAACAAACGGTTTAATAGCTATACGGATTCGCATTGATGGTATTGAGCAATAAGTAATGATTTAGAAGGAGTTGAATGCTGAACAAGCATCTGcgtt                    >  2:1512624/4‑146 (MQ=255)                                                                                                                                   aCCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAACCTTCGGTGGGGGTGGAATGCCGCAAAAGCATCTGCctct                   >  1:577188/1‑149 (MQ=255)                                                                                                                                   aCCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATCGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCCAACGCATCCGCctcc                   >  1:1477677/1‑148 (MQ=255)                                                                                                                                     tccgatctGGGAGCA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGAGTCGAATGCTGCAAAAGCATCTGCCTCTgg                 <  1:2025053/142‑1 (MQ=255)                                                                                                                                     cTTGGTTTGGGAGAA‑GGCGCAAAACTCAATGCACCATCGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGGTATTATTGGTGGGATTGAGCAATCAGTAATCACTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg                 <  1:1030434/149‑1 (MQ=255)                                                                                                                                     cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTGATAGCTCTACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATGCCGCAGAAGCATCTGCCTCTgc                 >  2:525428/1‑148 (MQ=255)                                                                                                                                     cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg                 >  1:1916722/1‑149 (MQ=255)                                                                                                                                     cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg                 >  2:1148535/1‑149 (MQ=255)                                                                                                                                     cTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg                 >  1:321986/1‑149 (MQ=255)                                                                                                                                        ggTTTGGGAGAA‑GGAGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg              <  1:1229413/149‑1 (MQ=255)                                                                                                                                        ggTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg              <  2:473107/149‑1 (MQ=255)                                                                                                                                         gTTTGGGAGAA‑GGAGCAAACCTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg             <  1:1261898/149‑1 (MQ=255)                                                                                                                                         gTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTCCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                                           >  2:1830559/1‑87 (MQ=255)                                                                                                                                         gTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTCCATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                                           <  1:1830559/87‑1 (MQ=255)                                                                                                                                            tGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt          <  1:460847/149‑1 (MQ=255)                                                                                                                                              ggAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggggcgtgg        >  1:1522130/1‑144 (MQ=255)                                                                                                                                              ggAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg        >  2:2005375/1‑149 (MQ=255)                                                                                                                                              ggAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCCCTGGGGGGGATgg        >  2:948388/1‑149 (MQ=255)                                                                                                                                              agagaA‑GAAACAAAACTCAATGCAACAACGGCAACATAAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg        <  1:1581144/148‑1 (MQ=255)                                                                                                                                               gagaA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                       >  1:1295693/1‑85 (MQ=255)                                                                                                                                               gagaA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                       <  2:1295693/85‑1 (MQ=255)                                                                                                                                               gagaA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACAGGTTTAATCGCTACACCTGGTATGATTGGACCGAGCTAGCAATCAGTAATCATTCAATTTGGTGGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa       >  1:1542332/1‑149 (MQ=255)                                                                                                                                                     ggAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATAc  <  1:2055823/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCG‑CGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA‑GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATAC  >  NC_000913_3_pae_tpiA/1207658‑1207952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.