| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 10.6% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4249453 = | 43 (1.540) | noncoding (103/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTGGCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_vch_tpiA/1068595‑1068445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA > NC_000913_3_vch_tpiA/4249453‑4249594 CTTTGGCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGG < 2:463756/149‑1 TTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTTACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATCCGGCAT < 1:61566/148‑1 TTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATCCGGCAT > 2:61566/1‑148 ATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATC > 1:380938/1‑89 ATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGATAAGGCGTTTACGCCGCATC < 2:380938/89‑1 gtgtGGAGAAGTCGTTTACGCTGCATTCGGCATAAAAACAGGTTGTTATTATCTGAAAGGGGCGAAAGCCCCTCTTATTATCGGGTTTAGCGTGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGA < 2:147498/145‑1 GCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA > 2:132687/1‑149 CTTTGGCGCGATTTTACTCAATGCGTTGTTAAGCAGAAAGTTGGTTGACGTTCCACCGCCAGAAGTTGTTCATCAGGAGCCATAAACAGAAAACCGCCGGGGTTACCGGCGGTGCAGATTGTTGACAACGTACGCATTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_vch_tpiA/1068595‑1068445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA > NC_000913_3_vch_tpiA/4249453‑4249594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |