New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3270206	17 (0.580)	3 (0.170) +GCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAG	3/172	2.6	21.8%	noncoding (3270206/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3270238	19 (0.650)					noncoding (3270238/4641682 nt)	repeat_region	repeat region

AACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGCCTTGCTCCGGGTGGAGTTTACCGTGCC  >  NC_000913_3_vch_tpiA/3270099‑3270369                                                                                                                                            |                                                                                                                                     aagcgggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑c                                                                                                                            <  2:359776/144‑1 (MQ=255)   ccAGGTGAGACGGACCAAGTAGCCGCTTTCTTTTGTGTATGGCGTCGTGATTTGTCATTCATCTTTCTGCCCCTCCAAAAGAGAAAACCCGCCGAAGCGGGTTTTTACGTAATTCAGGGGAAACTGACCGATAAGCCGGGTTCTGT‑CGt                                                                                                                          <  1:274393/149‑1 (MQ=14)   ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGt                                                                                                                          <  1:347717/149‑1 (MQ=255)       gTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGATGAAACTGACCGCTCAGCCGGGTTCTGT‑CGTggtc                                                                                                                      >  1:148924/1‑147 (MQ=255)        tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACa                                                                                                                     <  1:473147/149‑1 (MQ=255)                           gCTTTCTTATGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAACGCAAAACCACGCCGCAGCGGGATTTTGAGTACATCGGGTTAGAACGACCGATACGCCTGGTTCTGTCCGTGCA‑AGACAGTAAACTAGGCCAGc                                                                                                  >  2:158909/1‑149 (MQ=9)                                                                     cTGCCCCTCCAAAAGCAAAAACCCGTCGAAGCGGGTTGTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACgg                                                        <  1:475206/149‑1 (MQ=255)                                                                          ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGTGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCgg                                                   >  1:252942/1‑148 (MQ=255)                                                                              cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAAAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTCCCCGCGTTCAGTACGCTCCGTACCt                                               >  2:445826/1‑149 (MQ=37)                                                                               aaaaGCAAACACCCGCCGAAGCGGGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCtt                                              <  1:78809/149‑1 (MQ=255)                                                                                  aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg                                                                                                                                     <  1:289950/60‑1 (MQ=40)                                                                                         aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttttgggtatagtgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgcttcggcgggtttttgcttttggag                                           >  1:98230‑M2/1‑52 (MQ=255)                                                                                         aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttttgggtatagtgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgcttcggcgggtttttgcttttggag                                           <  2:98230‑M2/143‑92 (MQ=255)                                                                                             gccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAttt                                >  2:136247/1‑149 (MQ=255)                                                                                                             actaaaaccagGGGAAACTGACCAATAAGCCGctttcttttgagtatagcgtcgtggacagtcattcatctttctgccccgccaaaagcaaaaacccgcttcggcgggtttttgcttttggaggggcagaaagatgaatgactgtccac                 >  1:290727‑M2/5‑32 (MQ=255)                                                                                                                  caTCAGGGGAAACGGACCGAGAGGCCGGGTTCTGG‑CGTGGACAGTCAGTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTCTTTGGCCTTGCTCCGGGTGGAGtt           <  2:278280/148‑1 (MQ=255)                                                                                                                  aagcAGGTGAAACTGACCGATAAGCGGGCTTCTGT‑CGTGGACAGTCATTCATCTACGCCAGCAATCGCTCACTGGTTCAAGCAGCCTACCCGTGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGCCTTGCTCCGGGTGGAGtt           <  2:278013/146‑1 (MQ=255)                                                                                                                      aGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAccc                                      <  1:106159/118‑1 (MQ=255)                                                                                                                      aGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAccc                                      >  2:106159/1‑118 (MQ=255)                                                                                                                           aaaCTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGCCTTGCTCCGGGTGGAGTTTACCGTGcc  >  1:36004/1‑149 (MQ=255)                                                                                                                                 aCCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAttt                                >  2:286550/1‑113 (MQ=255)                                                                                                                                 aCCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAttt                                <  1:286550/113‑1 (MQ=255)                                                                                                                                            |                                                                                                                                     AACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGCCTTGCTCCGGGTGGAGTTTACCGTGCC  >  NC_000913_3_vch_tpiA/3270099‑3270369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.