| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 3,815,837 | Δ124 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 3815837 | 3815960 | 124 | 32 [0] | [0] 32 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3815836 | 0 (0.000) | 31 (1.060) | 28/284 | 0.2 | 100% | noncoding (3815836/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3815961 = | 0 (0.000) | noncoding (3815961/4641682 nt) | repeat_region | repeat region | |||||
CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC > NC_000913_3_vch_tpiA/3815814‑3816108 | atttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatccttttgctcgtcgtcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTg < 1:482923‑M2/2‑1 (MQ=255) caaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGatcatc > 2:286894‑M2/130‑149 (MQ=255) taacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGt < 1:94137‑M2/27‑1 (MQ=255) ctgcttgctaagtggaacttcaatcaaacggcggtgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcctccgtcggcttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGt < 2:85806‑M2/33‑1 (MQ=255) cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttatacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg > 1:76096‑M2/114‑149 (MQ=255) cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaacaggagtctaaacatcctccttaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt > 1:119465‑M2/113‑149 (MQ=255) gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatattacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCAATACGTTCATGTCGGT‑GTctgag > 1:129374‑M2/106‑147 (MQ=255) cgcaacttcaataaactggcgctgatatggtttcctgccttcgctcctcattttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaattcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCgg < 1:175586‑M2/45‑1 (MQ=255) gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatctcacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGc > 1:217607‑M2/104‑149 (MQ=255) caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCa < 1:17718‑M2/47‑1 (MQ=255) aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCtt < 2:161265‑M2/54‑1 (MQ=255) ataaactggcgctgatatggtttcatgccttcgctcctcatcttccttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCCCCCGTCTTCCTCCATCACTACCCTCCTGTCGGT‑CCCTGCGACAGACTCTTc > 2:147726‑M2/95‑149 (MQ=255) aactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAc > 2:195797‑M2/92‑149 (MQ=255) cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg > 1:369951‑M2/67‑149 (MQ=255) ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCGTCACCGtt > 1:166845‑M2/62‑149 (MQ=255) cttcatattatttttctagagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCCGTCATTACTACGTTCATGTCTGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTca < 2:12169‑M2/90‑1 (MQ=255) ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTAAAAT‑ACGCTGGTGGTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac > 1:504136‑M2/59‑149 (MQ=255) tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAtt > 1:465940‑M2/55‑149 (MQ=255) acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTCACAATTCCGa > 2:285993‑M2/51‑149 (MQ=255) cttttccacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc < 1:132360‑M2/100‑1 (MQ=255) ttatacagacaaaaaaaaggcgactcatcagtcgttgtaaaaatcaTGCGCCCGTCTTCGTTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGa > 2:508407‑M2/47‑149 (MQ=255) acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCgg > 1:173905‑M2/39‑149 (MQ=255) acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAc < 1:410915‑M2/58‑1 (MQ=255) acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAc > 2:410915‑M2/39‑96 (MQ=255) gactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGACGTTCCCAATTCCGACAGAAACTGCGGCTACCATCCCatt > 1:33410‑M2/26‑149 (MQ=255) cacccgtctccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCCTTTCTCTAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCTTCCCTTTCATc < 2:236765‑M2/128‑1 (MQ=255) tcggtttaaaaatcaTGCGCCCGTCTTCGGTCATCACTTCGTTTATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGGCAGAAACTGCGGCTACCATCCCTTTCATCGGATTg < 2:476712‑M2/134‑1 (MQ=255) ccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGtt > 1:279913‑M2/13‑149 (MQ=255) ttaaaaatcaTACGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCATTCATCGGATTGGtttt > 2:357145‑M2/11‑149 (MQ=255) taaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTc < 2:59958‑M2/140‑1 (MQ=255) atcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCtt < 2:217607‑M2/145‑1 (MQ=255) aTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGcc > 1:287735‑M2/2‑149 (MQ=255) | CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC > NC_000913_3_vch_tpiA/3815814‑3816108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |