New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3648122	36 (1.110)	5 (0.160)	5/268	3.6	13.3%	noncoding (3648122/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3648138	31 (1.010)					noncoding (3648138/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGG  >  NC_000913_3_vch_tpiA/3647990‑3648276                                                                                                                                                      |                                                                                                                                           tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGt                                                                                                                                            >  2:117046/1‑149 (MQ=255)           cATGCAGGTTATAAACCCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCTTTAGATGATGGCTATCTCACTCGAGTCATAGCCACCAACTCAGGGTTGGTGAGTAAAAAAACCGACTTTTCGTCGGttttttactt                                                                                                                                   <  2:460255/149‑5 (MQ=255)           cATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTCGGTGATGGTTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAACGT‑AAAAAACCGACGCACAGTCGGTTTTTTTACAt                                                                                                                                  <  1:417927/149‑1 (MQ=37)                     ataAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCgg                                                                                                                        >  1:407509/1‑149 (MQ=255)                        aaaCCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACa                                                                                                                     >  2:312207/1‑149 (MQ=255)                         aaCCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCATGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCTGATTCGGACaa                                                                                                                    >  2:347786/1‑149 (MQ=255)                          aCCAGCACGGCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAg                                                                                                                   <  2:155704/149‑1 (MQ=255)                               cACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCATCTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATACGGATTCGGACAAGGCTTa                                                                                                              <  2:481240/149‑1 (MQ=255)                                   gccTTGAAATAGTTTCAGTATGGTATTAGCATTGAGGCGTTAGATGATGGCTATCTCACTCCAGTGAGAGCCACCAACTCTGGGCTTGAAAGT‑AAAAAACCGACGCAGAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAatat                                                                                                          <  2:19835/148‑1 (MQ=255)                                     ctgtcAAGAGGTTCATTATGTTATGAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGa                                                                                                        <  2:104669/145‑1 (MQ=25)                                     cTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGa                                                                                                        <  1:488995/149‑1 (MQ=255)                                      ttGCAATGGTTTCAGTATGGTATTAGGATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGAc                                                                                                       <  2:257608/149‑1 (MQ=255)                                           aTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGa                                                                                                  <  1:453630/149‑1 (MQ=255)                                                        ggTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGta                                                                                     >  1:512608/1‑149 (MQ=255)                                                          tATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtata                                                                                   >  2:402147/1‑149 (MQ=255)                                                           aTTAGCATTGATGCGTTAGATGATGGCTATATCAGTACAGTCAGAGCCACCAACTGAGGGATGGAAAGT‑AAAAAACCGACGCAAAGTCTGTTTTTTTACATCAGGAGTGAGACTAGACTTAATATAAATATCAAATAGTGAAAGtatat                                                                                  >  2:449199/1‑149 (MQ=18)                                                                cATTGAAGCGTTAGATGATGGACATCTCACTCCCATCAGAGCCACACGATGCGTCCTAGCAATT‑AAAAAACAGACGCAAAGTCCGTTGCTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATc                                                                             <  2:120932/149‑1 (MQ=255)                                                                    gATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCa                                                                         <  2:566963/149‑1 (MQ=255)                                                                          ttAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGa                                                                   <  1:402147/149‑1 (MQ=255)                                                                                gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGtttttt                                                                                                                                       >  1:527460/1‑75 (MQ=255)                                                                                gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGtttttt                                                                                                                                       <  2:527460/75‑1 (MQ=255)                                                                                        tctcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTg                                                     >  1:427168/1‑149 (MQ=255)                                                                                            aCTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc                                                 >  1:189841/1‑149 (MQ=255)                                                                                                     agagCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAg                                        <  2:427168/149‑1 (MQ=255)                                                                                                              aaCTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATGTGACGATAACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGaaa                               >  2:80287/1‑149 (MQ=255)                                                                                                              aaCTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGaaa                               <  2:474623/149‑1 (MQ=255)                                                                                                                cTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAACTc                             >  1:147031/1‑149 (MQ=255)                                                                                                                 tCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCg                            <  2:407509/149‑1 (MQ=255)                                                                                                                          gAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCtt                   >  1:233248/1‑149 (MQ=255)                                                                                                                          gAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGCACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCtt                   >  2:520467/1‑149 (MQ=255)                                                                                                                           aaaGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTg                  <  1:431496/149‑1 (MQ=255)                                                                                                                           aaaGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTg                  <  2:512608/149‑1 (MQ=255)                                                                                                                                   aaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGtt           <  1:165194/149‑1 (MQ=255)                                                                                                                                    aaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCTTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTa          <  2:498114/149‑1 (MQ=255)                                                                                                                                            gCAAAGTCGGTTTTTTTACATCCGGATTCGGACATGGCTTAATATGACGATGACCTAGTGAAATTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTgg  <  1:505817/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                           TCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGT‑AAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGG  >  NC_000913_3_vch_tpiA/3647990‑3648276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.