| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 1978503 | 1979278 | 776 | 30 [0] | [0] 30 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 1978502 | 0 (0.000) | 30 (1.120) | 27/268 | 0.1 | 100% | noncoding (1978502/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 1979279 = | 0 (0.000) | noncoding (1979279/4641682 nt) | repeat_region | repeat region | |||||
TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC > NC_000913_3_vch_tpiA/1978364‑1978641 | tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCCTGAAGCAGATCAGACAACACACTA‑AGTTACTTAACATAAATGtataagtcaa > 2:208062‑M1/1‑139 (MQ=255) cacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCGCACAAAAACCTA‑AAGTACTTAACATAAATGtataagtcatactttt > 2:477860‑M1/1‑133 (MQ=255) cacTTATCTAAGATTGTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATGACA‑AAGAGTGTCGTCTTATGTAACATAAATGtataagtcatactttt > 2:477862‑M1/1‑133 (MQ=255) ttaAGATTTTTCTTACATCGACGTATCTGTACTCGTGCCTAAACGCACATACAACGGAGGGGGGATGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgg < 1:477862‑M1/148‑24 (MQ=255) cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACATCGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAGAAAACACTC‑AATTACTTAACATTATTGtataagtcatacttttgttttgg < 2:374211‑M1/149‑24 (MQ=255) tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttggg > 1:90248‑M1/1‑125 (MQ=255) cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtgtttcaat > 1:96964‑M1/1‑114 (MQ=255) cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 2:275425‑M1/1‑114 (MQ=255) tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc > 1:479872‑M1/1‑113 (MQ=255) aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcattct > 2:168456‑M1/1‑112 (MQ=255) aCTGTACTCGTCACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatccgttaaaaagtt < 1:176748‑M1/149‑49 (MQ=255) tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatactt < 1:427305‑M1/108‑15 (MQ=255) tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatactt > 2:427305‑M1/1‑94 (MQ=255) tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTACCATAAATGtttaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg < 1:16558‑M1/149‑59 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa > 1:434886‑M1/1‑78 (MQ=255) aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaggtttttcgctacgctagcaagcaaaaatgaa > 1:236357‑M1/1‑73 (MQ=255) aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgcgtgtatttcaatctgttaaaaagtttttcgctaacctatcaaacaaaaattaaaaag > 2:262195‑M1/1‑69 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat > 1:424045‑M1/1‑62 (MQ=255) ttCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 2:90248‑M1/149‑96 (MQ=255) cGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtatcagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaagcaaaaatgaaacaggaataatcgaaataggatgttgggc > 1:349777‑M1/1‑44 (MQ=255) aTCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa < 1:275425‑M1/149‑116 (MQ=255) tCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat > 2:422813‑M1/1‑33 (MQ=255) acaAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact < 1:6987‑M1/149‑121 (MQ=255) aaaaCACTC‑AATTACTTAACATAAATGtataggtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt < 1:62000‑M1/78‑52 (MQ=255) aaaaCACTC‑AATTACTTAACATAAATGtataggtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt > 2:62000‑M1/1‑27 (MQ=255) aaaaCACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca < 2:403105‑M1/149‑123 (MQ=255) aaCACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc > 1:277400‑M1/1‑25 (MQ=255) aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata > 1:415374‑M1/1‑18 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc > 1:256794‑M1/1‑12 (MQ=255) aaCATAAATGtataagtcatactcttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg < 1:384726‑M1/149‑140 (MQ=255) | TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC > NC_000913_3_vch_tpiA/1978364‑1978641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |