| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 3676211 = | 26 (1.040) | 3 (0.130) | 3/272 | 3.3 | 8.9% | noncoding (91/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | = 4080042 | 37 (1.560) | noncoding (23/98 nt) | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATT > NC_000913_3_vch_tpiA/4079905‑4080178 | gCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGca > 2:15868/1‑145 (MQ=38) aTCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaa > 1:289606/1‑149 (MQ=255) gCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGAGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCg > 2:71331/1‑149 (MQ=255) aaGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGta > 2:89935/1‑149 (MQ=255) gggTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGtata > 2:306565/1‑149 (MQ=255) tgAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACAAAGTCGTATAAATTc < 1:380444/149‑1 (MQ=255) aGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCaa > 2:253905/1‑149 (MQ=255) ggAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAAt < 1:204524/149‑1 (MQ=255) gAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATg > 2:258858/1‑149 (MQ=255) aTGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTAtt < 1:169769/149‑1 (MQ=255) ttgtgtCGAATATCAGCGTAAGATGTGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTg < 1:222337/147‑1 (MQ=255) ggTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCCGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAACTTCAATGTAttcc > 2:298016/1‑147 (MQ=255) gtgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACACAGTCTTATAAATCCAATGTATTGCa > 1:262795/1‑149 (MQ=255) gagtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCa > 2:429948/3‑149 (MQ=255) tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAAt > 2:179417/1‑133 (MQ=255) tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAAt < 1:179417/133‑1 (MQ=255) gAATATCAGCGTAAGCTGCGCGATGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGCCAACGTGAGCGTTGTTCATGCCGGATGCAGCGTGACCGCCTTATCCGGCCTACAAACGCGTATCAATTCAATCTATTGCAGTCTa > 2:68753/1‑149 (MQ=25) gTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGGCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGcc < 1:229772/149‑1 (MQ=255) aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGa < 1:258858/149‑1 (MQ=255) gCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCCCTTTATTGCTAGGCCTGAt > 2:99955/1‑149 (MQ=255) gAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATAGCAGTTTATTGGTAGGCCTGATAagcgacgcg > 1:127395/1‑144 (MQ=255) gTAATGAAAAAAAATGATTGTAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAGTTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCa < 1:297742/149‑1 (MQ=25) gggAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGGAGACCTGATAAGCGAAGCGCATAAG‑GCaa > 1:254202/1‑149 (MQ=255) aaaaaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCt < 2:152433/149‑1 (MQ=255) atgatgTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGc > 2:28890/1‑149 (MQ=255) agTCAATCAGATTGCTAACAAATTTCGCGGTGTTCATGCCGTATGCGTAGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAACTCAATGGATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGt < 2:44754/148‑1 (MQ=25) cAATCAGATTGCTGATAACGTGCGGGTGGTGCATGCCGGATGCGGCGTGAACGCCGGAGCCGGCCTATAAAGTCTGATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGtcat < 1:205140/149‑1 (MQ=25) aTCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATGGCAGTTTATTGGTAGGCCTGATAAGCGCAGAGCAACAGTGCAA‑CTTACGCTTGtcatca > 2:20802/1‑149 (MQ=25) gACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGccc > 2:225524/1‑149 (MQ=255) aaCGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGcacgta > 2:225029/1‑144 (MQ=255) tgagcgTTGTTCATGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GAAATCTTACACTTGTCATCAGTCTCATGCCCATAAcca > 2:421064/4‑148 (MQ=255) tgttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAt < 1:225524/149‑1 (MQ=255) ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtgt > 1:330774/1‑149 (MQ=255) tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtgtg < 1:306565/149‑1 (MQ=255) cGGATGCGGCGTGAACGCCTTATACGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGTTCTGATAAGCGCAGCGCAGCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtggtg < 1:114150/149‑1 (MQ=255) gtgtcgggcgTGAACGCCTTGTCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGTTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGTTTGGCATCAGTCTCATGCCCATAACCTTATTGATGtggtggtgg < 2:25243/143‑1 (MQ=38) ggcgTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAAt > 2:393127/1‑149 (MQ=255) gcgTGAACGCCTTATCCGACCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTAATCAGTCTCATGCCCATAACCTTATTGATGTTGTGGTGGGTAAAtt > 2:298479/1‑149 (MQ=255) | GCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAG‑GCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATT > NC_000913_3_vch_tpiA/4079905‑4080178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |