| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 227052 | 26 (0.550) | 8 (0.180) | 7/274 | 5.1 | 24.3% | noncoding (227052/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2727910 = | NA (NA) | noncoding (2727910/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCG > NC_000913_3_vch_tpiA/226909‑227135 | aCCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGGGCGTTCTGTAAGGCTGTGAAGTTGTAGTGTGAGGTATGCTGGAGGTATCAGCAGTGCG‑AATGCTGACATAAGTGACGATAAAGCAGGTGAAAAGCCCGCTCGCCg > 2:193583/1‑149 (MQ=11)aCCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg > 2:818649/1‑149 (MQ=38) gAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:241077/149‑1 (MQ=39) cGGCAGCGACGCTTATGCGTTGTTGGGTTGGGGAGGGTTCTGTCCCCATGCTGGTGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg < 1:608119/149‑1 (MQ=11) cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCacg > 1:85083/1‑147 (MQ=38) ggCAGCGTCGCTTGTGAGATGGTGGGTAAGGGAGCGTTCTGTAAGCCTGTGAAGGGGTAATGTGAGGTATGCTGCAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACTATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg < 2:318466/149‑1 (MQ=11) gCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATGAGTATAGACGCAATTGGTTAAAAGCCCGCTCGCCGGAAGACCAAggg < 1:199989/149‑1 (MQ=11) gaGCGACGATTATGCTTTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGACGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGt < 1:739180/148‑1 (MQ=255) aCGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGGGGGTGAGAAGCCCGTTCACCGCAAGACCCAGGGTTccgt > 1:398340/1‑147 (MQ=11) gCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATCAGTAACGATAAAGCGCGCGAAAAACCCGCTCGCCGAAAGACAAAAGGTTCCTGTc > 1:73731/1‑149 (MQ=11) ttATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:207334/1‑149 (MQ=38) ttATGCGTTGTTGGGTAGGGGAACGTTCTGTAAGCCTGGGAAGGGAAACTGTGAGGAATGGTGGAGGTATAAGAAGTACG‑AATGATGACATAAGTAACGATAAAGCGGGTGAAATGCCCAGTCGCCGGAAGACCAAGGCTTCCTGTCCa > 2:534087/1‑149 (MQ=11) gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGCGGTATGATGGCCATATTTGAAGCGCGCTATGC‑GTCGTAAGTAACGATAAAGGGGGTGAAAGTGACGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa > 1:820797/1‑149 (MQ=2) gTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc < 1:430647/149‑1 (MQ=34) gTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGAGCAGGGTGAGTc > 2:54298/1‑149 (MQ=21) ttCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg > 1:448037/1‑149 (MQ=35) tGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 1:25523/1‑149 (MQ=35) gTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc < 2:25523/149‑1 (MQ=35) tAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGGCGAcccc > 1:815571/1‑149 (MQ=25) gCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa < 1:504119/149‑1 (MQ=35) gAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAg > 2:694831/1‑149 (MQ=35) gAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTCACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAg < 1:650877/149‑1 (MQ=25) tACGGTGAGGTATGCTGGAGGTATCAGAAGGGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGaaa < 1:184359/149‑1 (MQ=17) tgtgAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc > 1:508627/1‑149 (MQ=32) tgtgAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGGCCAACGTTAATCGGGGGAGGGTGAGTCGCCCCCTAAGGCGCGGCCGAACGGc > 2:89542/1‑149 (MQ=11) catgtttgAGGTATCAGAAGTGCA‑AATGCCGACATCAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCg < 1:272211/142‑1 (MQ=1) | ACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCG‑AATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCG > NC_000913_3_vch_tpiA/226909‑227135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |