New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	31 (0.650)	6 (0.140)	6/268	5.4	15.6%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	36 (0.810)					noncoding (4543016/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTG  >  NC_000913_3_vch_tpiA/4542882‑4543162                                                                                                                                       |                                                                                                                                                    gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAATGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                       >  1:279207/1‑149 (MQ=255)          tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt                                                                                                                              >  2:144948/1‑149 (MQ=255)            aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTATATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            >  1:785141/1‑149 (MQ=255)               cttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggggg                                                                                                                         <  2:226251/149‑1 (MQ=255)                ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGa                                                                                                                        >  1:376068/1‑149 (MQ=255)                       cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 <  2:269170/149‑1 (MQ=255)                                 cagaggCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg‑g                                                                                                      <  2:205624/144‑1 (MQ=255)                                         atatAATCATCTATAAATAAAGATAACAACAGAATATTAAGCCAACAAATAATCTTAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGTGAAAACTGTGCAGTGTTG‑GCAGTCaaa                                                                                              <  2:230521/149‑1 (MQ=255)                                          tataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAAc                                                                                             >  1:749182/1‑149 (MQ=255)                                                    tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTAAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaa                                                                                   >  2:300183/1‑149 (MQ=255)                                                     ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaaa                                                                                  >  1:582008/1‑149 (MQ=255)                                                      taaacaaaGACAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaaaa                                                                                 <  1:430853/149‑1 (MQ=255)                                                          taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaaaacaaa                                                                             >  1:261332/1‑149 (MQ=255)                                                          taaaGATAACAATAGAATATTAAGCCAACAAATAAACTCAAAAAGTCTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaaaacaaa                                                                             <  2:714501/149‑1 (MQ=255)                                                          taaaGATAACAATAGAATAATAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTacaaaacaaa                                                                             <  2:62037/149‑1 (MQ=255)                                                            aaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAgt                                                                           <  2:376068/149‑1 (MQ=255)                                                               ttAACAATAAAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCGCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTa                                                                        <  1:740357/148‑1 (MQ=255)                                                                    aaTAGAATCTCAAGCCAACAAATAAACTGAAAACGTTCGTCCGCCCAGCTTTCCTCTATGAGTCAACATGGCCCCAAATGTTTCATCTTGTGGGGGAAAACTGTCCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACCAACGGTACaaca                                                                   >  2:136926/1‑146 (MQ=255)                                                                             ttAAGCCAACAAATAAACGGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                          <  2:331966/149‑1 (MQ=255)                                                                                  ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGGTTACAAAACAAAGTGTACAGAACAACTGccaaagta                                                     >  2:369236/1‑143 (MQ=255)                                                                                      caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAtt                                                 <  1:300183/149‑1 (MQ=255)                                                                                         aTAAACGGAAAAAGGTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAg                                              <  2:737230/149‑1 (MQ=255)                                                                                               tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAg                                        >  2:488243/1‑149 (MQ=255)                                                                                                gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa                                                                                                                                                     <  2:212944/40‑1 (MQ=255)                                                                                                gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa                                                                                                                                                     >  1:212944/1‑40 (MQ=255)                                                                                                  aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttt                                     <  1:443506/149‑1 (MQ=255)                                                                                                   aaaGTTTGTCCGCGATGCTTTCCTCGATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                    <  2:294810/149‑1 (MQ=255)                                                                                                         tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                              <  2:468962/149‑1 (MQ=255)                                                                                                         tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                              <  2:812669/149‑1 (MQ=255)                                                                                                                    cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                   <  2:35862/149‑1 (MQ=255)                                                                                                                     tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAGCTCGTTTACAAAACAAAGTGTACAGAACGACTGCACATGTCGATATAGAAATAGTTTTTTGAACTGAAagcacctg                  >  2:232539/1‑145 (MQ=255)                                                                                                                       tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGa                >  2:542239/1‑149 (MQ=255)                                                                                                                          tctATGAGTCAAAATGGCCCCAAATGTACCCCAGCAGGTGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTATAAATAGTTTTTTGAAAGGAAAGCAGCAGGaaaa             >  1:200689/1‑149 (MQ=255)                                                                                                                                aGTCAAAATGGCCCCAAATGTTTCATCTTTGGGTGGAAAAACGTG‑AGTTCAGATGAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaaa       <  1:607988/149‑1 (MQ=255)                                                                                                                                 gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAc      >  1:746436/1‑149 (MQ=255)                                                                                                                                  tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct     >  1:88276/1‑149 (MQ=255)                                                                                                                                    aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCTTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTTGGCAGCGTCACTTTAAAGGAAAGCAGCATGAAAATTAAAActct   <  1:199598/149‑1 (MQ=255)                                                                                                                                     aaaTGGCCCCAAATGTTTCATATTTTGTTGGAAAACTGTGCAGATTTG‑GCAGTCAAACTCGTTTACAAAAAAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTg  <  2:797240/149‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                    GCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTG‑GCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTG  >  NC_000913_3_vch_tpiA/4542882‑4543162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.