Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	1196267	1211465	15199	20 [18]	[18] 19	[icd]–[icdC]	[icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,[icdC]

GCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAAC  >  NC_000913_3_vch_tpiA/1211418‑1211614                                                 |                                                                                                                                                      gcgcCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCg                                                  >  2:642215/1‑149 (MQ=255)     cATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGaaaa                                              <  1:11017/149‑1 (MQ=255)         tGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATg                                          <  2:796768/149‑1 (MQ=255)            gTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTaa                                       >  1:59274/1‑149 (MQ=255)             ttGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                      <  1:29537/149‑1 (MQ=255)                   tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTcc                                <  1:743416/149‑1 (MQ=255)                       gCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCAtgt                            >  1:560685/1‑149 (MQ=255)                             gACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTaaa                      <  1:296963/149‑1 (MQ=255)                              aCCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAACCGAGCATCGAAAAAATGTAATCTCTCCATGTGTTAAat                     >  2:296963/1‑149 (MQ=255)                               ccTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCCGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAata                    >  1:769977/1‑149 (MQ=255)                                cggactGTAAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAatat                   <  1:225373/144‑1 (MQ=255)                                cTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAatat                   >  1:128135/1‑149 (MQ=255)                                 tGATTGTTAAAGGTATGGAAGGCGCGATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCGTCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATAtt                  <  1:752770/149‑1 (MQ=255)                                      gTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAAc             >  1:808096/1‑149 (MQ=255)                                       ttAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAAAGTCTGATGGAAGGGGCTAAGCTGCTGAAATGT‑TCAGCGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAACTATTTAAACg            >  2:643576/1‑149 (MQ=18)                                          aaGGTATGGACGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTACCCATGTGTTAAATATTGAAACGGGc         <  1:539589/149‑1 (MQ=255)                                             gTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGCAATGT‑TCAGAGTTAGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGta      >  2:572253/1‑149 (MQ=255)                                             gTATGGAAGGCGCAATCAATACCAAGACAGTAACTTATGACTTCGAACGTCTGATGGAAGCAGGTCAGCAGC‑GCGATGTATCAGTGTTTGGTGCAGCGATAATCGACAACATGTAATCTCTACATTTGTTAAATATTGAAACAGGCGta      >  2:209495/1‑149 (MQ=19)                                                 ggAAGTCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCGCCATGTGTTAAATATTGAAACGGGCGTATAac  <  2:469388/149‑1 (MQ=255)                                                 |                                                                                                                                                      GCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGT‑TCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAAC  >  NC_000913_3_vch_tpiA/1211418‑1211614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑