New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	28 (0.870)	8 (0.260)	8/264	2.6	24.5%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	23 (0.760)					noncoding (4543016/4641682 nt)	repeat_region	repeat region

CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_vch_tpiA/4542564‑4542720 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCATGAGGTGGTTTTTGGAGAGAAGAATGAGGAAGATGCGTCGAGCCAC  <  NC_000913_3_vch_tpiA/4543016‑4542872                                                                                                                                                                                                                                                                                                                 CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AAT                                                                                                                                                           >  2:6793/1‑149    TACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGG                                                                                                                                                        <  1:343899/149‑1     ACTGTGCGGTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAAGCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAGACAAGTACATACAAGAC‑AATTGGG                                                                                                                                                       <  2:564317/149‑1       TGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGC                                                                                                                                                     >  2:256138/1‑149                         TAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAAATTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCATTTTGACTCATAGAGG                                                                                                                                   >  1:173919/1‑149                                GCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCATTTTGACTCAGAGAGGCAGGCAT                                                                                                                            >  2:388371/1‑149                                                                                                TTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCATTTTAACTCATAGAGGAAAGCATCGCGGACAAACTTTTTAAGTTAATTTGTTGGCTTAATATTCTATTGTTATGTTTATTGATtcat                                                            >  1:480723/1‑145                                                                                                             ATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCTGACAAACTTTTTTAGTTTATTTTTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCAT                                               <  1:256138/149‑1                                                                                                                   AATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTTCATtatttg                                         >  2:444329/1‑143                                                                                                                            AAAAAAACAAATAAATACAAGAC‑AATTGCGGCCATTTTGACTTATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCATGAGGTGGTTTTTGGA                                <  1:444329/149‑1                                                                                                                                 AACAAATAAATA‑TAGACGTATTGGGGCCATTTTGAATAATAGAGAAAAGCATCTCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCATGAGGTGGTTTTTGGAGAGAA                           <  2:369489/149‑1                                                                                                                                                GAC‑AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACATTTAAAGTTTATATGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCATGAGGTGGTTTTTGGAGAGAAGAATGAGGAAGATGC            >  1:22988/1‑149                                                                                                                                                           GCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTTTGTTTTTTTGTTGGCTTAATATTCTATTGTTATCTTTATTTCTAGATGTTTATATTGCATGAGGTGGTTTTTGTATAGTAGACTGAGGAAGATGTGTCGCGCCAC  >  2:11397/1‑149                                                                                                                                                                                                                                                                                                                 CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAC‑AATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_vch_tpiA/4542564‑4542720 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGTTATCTTTATTTATAGATGTTTATATTGCATGAGGTGGTTTTTGGAGAGAAGAATGAGGAAGATGCGTCGAGCCAC  <  NC_000913_3_vch_tpiA/4543016‑4542872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.