New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2118491 =	NA (NA)	7 (0.230)	6/268	3.2	17.1%	noncoding (26/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	3708329 =	34 (1.110)					noncoding (58/86 nt)	REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTT  >  NC_000913_3_vch_tpiA/2118344‑2118636                                                                                                                                                    |                                                                                                                                                   gcAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTAt                                                                                                                                                   >  2:32329/1‑149 (MQ=255)  cacgATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAATTAATTTCATTTTTTCCTCATAAATTTGATGCTAGGTGAGTCTGCGTTTGTTTTTTTCGTTGCTGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                                                                  <  1:25868/146‑1 (MQ=255)      aTGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGc                                                                                                                                              >  1:71168/1‑149 (MQ=255)         gcgcTGTCGGCATGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                                                                                           <  1:459638/149‑1 (MQ=255)         gcgcTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCTTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                                                                                           <  1:162832/149‑1 (MQ=255)                   cACGATTGCCGCAAGTGTGGTTGGGCAGAATAAGTAGTTTCATTTTTTCCTCATAAATTTGATGCCAGGTGGGGGTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGGTGCTACGCTGACGCGTCTTATCAGGCCTATAAGAACCgg                                                                                                                                 >  2:566071/1‑148 (MQ=255)                        ttGGCGCAAGTGTGGTTGCCCATAATAAGTAATTTTATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGcaca                                                                                                                            <  2:81781/149‑1 (MQ=255)                        ttGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGcaca                                                                                                                            <  1:373946/149‑1 (MQ=255)                                attgtgGTTGCCTTTGATAAGTAATTTCGTTTTTTCCTCATAAATTTGATGCCAGGTGGGGCTGCGTTTGTTTTGTTCGTTGCGGCTTTTTGCCTGATGCGACGCGGACGCGTCTTATCAGGCCTACAAGTCCCGAGCACAGAACCGTa                                                                                                                    <  2:581862/147‑1 (MQ=25)                                 gtgtGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCTAGGTGAGGCAGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCTTGATGCGCCGCTGACGCTTCTTATAAGGCCTACAAGACCAGATACCAGAAcagcag                                                                                                                   >  2:481632/1‑144 (MQ=255)                                   gtgGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGa                                                                                                                 <  1:32329/149‑1 (MQ=255)                                             aGAATAAGTAATTTCATTTTTTGCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCAGATGCGACGCTGACTCGTCTTATCAGGCCTACAAGACCCGATCACAGAACTGTAGGA‑CGGATAAGGc                                                                                                      <  2:365848/149‑1 (MQ=255)                                             aGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGc                                                                                                      <  1:351090/149‑1 (MQ=255)                                               aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACACGAGCACAGAACCGTAGCC‑CGGATAAGGCGt                                                                                                    >  2:240196/1‑149 (MQ=255)                                               aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTAAGACTGCATTAATATTGTTAGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt                                                                                                    >  1:15465/1‑149 (MQ=25)                                                     tAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcgc                                                                                              >  1:578484/1‑149 (MQ=255)                                                     tAATTTCATTTTGTCCTAATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTGGCCGCTTTTTGCCTGATGCGACGCTGAAGCGGCTTGTTTGACCTACAAAAACCCAACACAGAAACGTAGAA‑CTCATGAGGCGTTCAcgc                                                                                              >  2:56037/1‑149 (MQ=255)                                                           cATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcg                                                                                               <  2:16415/142‑1 (MQ=255)                                                           cATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcg                                                                                               >  1:16415/1‑142 (MQ=255)                                                                     tcttAAATTTGATGTCACGTGAGGGTGTGTTTTTTTTGGTCGTTGCCGCGTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATTAGGCGTTCACGCCGCATCGGGCATTCAg                                                                              <  2:31943/146‑1 (MQ=21)                                                                     tCATAAATTTGATGCCAGGTGAGGCTGAGTTCATCGGTACCGGTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAg                                                                              >  1:422858/1‑149 (MQ=18)                                                                       aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg                                                                            <  2:103247/149‑1 (MQ=255)                                                                       aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg                                                                            <  1:256820/149‑1 (MQ=255)                                                                       aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg                                                                            >  1:50145/1‑149 (MQ=255)                                                                       aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg                                                                            >  1:519040/1‑149 (MQ=255)                                                                            ttttATGCCAGGTGAGGCGGCGTTTGTTTGGTTCGTTGCCGCGTTTTGCCTGATGCGACGCTGACGCATCTTATCCGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGa                                                                       <  2:119681/149‑1 (MQ=25)                                                                             tcgATGCCAAGTGAGGCTCCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCCATAAGACCCAAGCACAGAACCGTAGGA‑CGGATAAGCCGTTCACGCCGCATCCGGCATTCAGTGCGTGAt                                                                      <  2:380104/147‑1 (MQ=25)                                                                                 tGCCAGGTGAGGCTGCGTTTGTTTTCTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGTCCCTAGCACAGAACTGTAGGA‑CGGATAAGGCGTTCACGCCGCATCAGGCACTGAATGCCGGATGCgg                                                                  <  1:523378/149‑2 (MQ=21)                                                                                       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt                                                                                                    <  1:212267/109‑1 (MQ=255)                                                                                       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt                                                                                                    >  2:212267/1‑109 (MQ=255)                                                                                       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa                                                            <  1:353004/149‑1 (MQ=255)                                                                                       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATCCCGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa                                                            >  1:583853/1‑149 (MQ=255)                                                                                            gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                                                       <  1:401777/149‑1 (MQ=255)                                                                                            gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACAAGACCCGAGCACAGAACCGTAGGATCGTACAA‑GCACCCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                                                       >  1:14044/1‑149 (MQ=25)                                                                                                      ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTTTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                             <  1:132888/149‑1 (MQ=255)                                                                                                      ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                             <  2:578484/149‑1 (MQ=255)                                                                                                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg                                                                   >  1:422133/1‑126 (MQ=255)                                                                                                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg                                                                   <  2:422133/126‑1 (MQ=255)                                                                                                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                            >  1:501345/1‑149 (MQ=255)                                                                                                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt                                     >  2:17292/1‑149 (MQ=255)                                                                                                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCAAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt                                     >  1:459139/1‑149 (MQ=255)                                                                                                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAAGCGTTAAAGCAGCATCCGGCATTCAGTGCCTAATGCGACGCTGAAGCGTCTTATCAGGCCTACAGGt                                     >  1:105396/1‑149 (MQ=25)                                                                                                                    tcTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCATGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg                               <  1:306889/148‑1 (MQ=255)                                                                                                                    gCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg                               >  1:272767/1‑149 (MQ=255)                                                                                                                        tctGCCTGTGGCGACGCTGACGCTGCTGATTGGGGCAACATTACGCGCGCACAGTGCCGTAGTA‑CGGATAAGGCTGTCACGCCGCATCCGTCATCTAGCTGCTGATGCGACGCTGACGCGTCTTATCATGCCTACAGGTCCCGAGcaca                           <  2:14044/147‑1 (MQ=12)                                                                                                                           gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGaa                        <  1:410211/149‑1 (MQ=255)                                                                                                                            ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCTCGAACAAAGAAc                       >  1:283231/1‑149 (MQ=255)                                                                                                                                aTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCATACAGGTCCCGAGCACAGAACCGTa                   <  1:17292/149‑1 (MQ=255)                                                                                                                                   ctaCGCTGAGGTGTGTTATCAGGTCTACATGACCCGAGAACTGAACCGTAGGA‑CGGATAAGGCGTTTACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGa                <  2:495886/147‑1 (MQ=25)                                                                                                                                         gtcagcgTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTcc                                   <  2:137603/120‑1 (MQ=255)                                                                                                                                           aCGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATAACGCCGCATCCGGCAATCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCAACAGGTCCCGAGCACAGAACCGTAGGACGGATAAg        >  1:557778/1‑149 (MQ=255)                                                                                                                                                 cTTATCAGGCCTACAAGCCCCGAGCACAGAACCGTAGGG‑AGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGTATAAGGCGttt  <  1:116522/149‑1 (MQ=255)                                                                                                                                                 cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt  >  2:311344/1‑149 (MQ=255)                                                                                                                                                 cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt  >  2:311088/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTT  >  NC_000913_3_vch_tpiA/2118344‑2118636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.