New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3701908 =	36 (0.760)	4 (0.090)	4/272	6.7	10.6%	noncoding (3701908/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3701949 =	33 (0.730)					noncoding (3701949/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCGAGCGCATCAAGCTCAGCGGTGAACTACCAAGCCCACTGAATCCACCGCCGGGTTGCGCCTTCAACGCCCGCTGTCGTCGGCGCTTCGGCCCCTGCACCCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_vch_tpiA/3702050‑3701908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caactggGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCG  >  NC_000913_3_vch_tpiA/3701949‑3702060                                                                                                                                                                                                                                                                 CCGCGAGCGCATCAAGCTCAGCGGTGAACTACCAAGCGCACGGAATCCCCCGCCGGGTTGCGCCTTCAACGCCCGCTGTCGTCGTCGCTTCGGCCCCTGCACCCCGTTGCAGCCGCACCTAAAAGACTACGCCGGTCAACTGctcgctt                                                                                                            >  2:355566/1‑142                                                                                                     ACCCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTCCGTGCAGGGGCCGAACGGCCTACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGAT        >  1:752589/1‑149                                                                                                       CCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATT                                                       >  1:171630/1‑100                                                                                                       CCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATT                                                       <  2:171630/100‑1                                                                                                           TTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGCTGCGCGCGCGGCGATCGTCCG  >  1:821808/1‑149                                                                                                                                                                                                                                                                 CCGCGAGCGCATCAAGCTCAGCGGTGAACTACCAAGCCCACTGAATCCACCGCCGGGTTGCGCCTTCAACGCCCGCTGTCGTCGGCGCTTCGGCCCCTGCACCCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_vch_tpiA/3702050‑3701908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caactggGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCG  >  NC_000913_3_vch_tpiA/3701949‑3702060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.