| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 257908–258675 | 258683 | 9–776 | 60 [0] | [0] 59 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 257907 | 0 (0.000) | 55 (1.520) | 46/268 | 0.0 | 100% | noncoding (257907/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 258684 = | 0 (0.000) | noncoding (258684/4641682 nt) | repeat_region | repeat region | |||||
ACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA > NC_000913_3_vch_tpiA/257759‑258053 | aCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGGTCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTA < 2:451374‑M1/149‑1 (MQ=255) cGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAa < 1:455162‑M1/149‑2 (MQ=255) gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑AACTAGGCCCGTATATTCGTGAAGGTAagtgca > 2:378643‑M1/1‑143 (MQ=255) gtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 1:205015‑M1/149‑9 (MQ=255) gtTAAAAATTTGCTAAATTTGGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 1:148689‑M1/149‑9 (MQ=255) ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag > 2:240589‑M1/1‑140 (MQ=255) tAAAAATTTGCTAAATTTTGCCAAGTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 2:200821‑M1/149‑11 (MQ=255) aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGAAACCATTCCCG‑ATATTCGTGAAGGTAagtgcaaagataat < 1:332861‑M1/149‑15 (MQ=255) cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:243682‑M1/149‑21 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACTCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTATGCCCGTATATTCGTGAAGGTAagttcaaggatactcggttcg > 2:345214‑M1/1‑128 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTACGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct > 2:73052‑M1/1‑128 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTAGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTAGATTCGTGAAGGTAagtgaaaagatcatggattct > 2:603654‑M1/1‑128 (MQ=255) ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt < 1:240589‑M1/149‑26 (MQ=255) ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt > 1:38069‑M1/1‑124 (MQ=255) ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt < 2:631853‑M1/149‑26 (MQ=255) tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:25764‑M1/149‑27 (MQ=255) ttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 1:385556‑M1/149‑28 (MQ=255) ccAATTTGGTAAAACAGTTGCATCACAACAGCAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt > 1:514569‑M1/1‑119 (MQ=255) tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct > 1:596880‑M1/1‑115 (MQ=255) ttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg > 1:388613‑M1/1‑114 (MQ=255) gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgaatctttttagattgcttggat > 2:124443‑M1/1‑111 (MQ=255) aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 2:388613‑M1/149‑41 (MQ=255) ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgtctgtatgcgtc > 1:289775‑M1/1‑102 (MQ=255) cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac < 2:596880‑M1/149‑51 (MQ=255) tCAAAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcgattctttttcgattgtctggctgtatgcgtcaacgt < 2:63780‑M1/149‑53 (MQ=255) caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaa > 1:2201‑M1/1‑94 (MQ=255) gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc > 1:189101‑M1/1‑88 (MQ=255) aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt < 2:69239‑M1/149‑71 (MQ=255) ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:624604‑M1/97‑25 (MQ=255) ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt > 2:624604‑M1/1‑73 (MQ=255) cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc > 1:117201‑M1/1‑69 (MQ=255) gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg < 1:585727‑M1/149‑84 (MQ=255) cgggcccccctaagagcAGAGTGATCAAAAAATTTACCT‑CACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg < 1:202182‑M1/142‑84 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg < 1:546876‑M1/149‑85 (MQ=255) cacCCGAAGGGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg < 2:299129‑M1/149‑89 (MQ=255) agagCAGATTGATCAATAGATTTACCG‑CACTAGGCCTGGATATTCGTGAAGGTAagtggaatgagaatcgattcttgtttgattgtctggctgtatgcgtcaacgtgaaaccggctccggaagtgcgtgaattctggggctggtggatg < 2:632690‑M1/149‑96 (MQ=255) gCAGATTGATCAAAAAATTTCCCG‑CACTAGGCCCGTATAAAAGCGAAAGTAtgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag < 1:53295‑M1/149‑99 (MQ=255) gATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:570430‑M1/84‑37 (MQ=255) gATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg > 2:570430‑M1/1‑48 (MQ=255) tGATCAAAAAATTGACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa < 2:563692‑M1/149‑105 (MQ=255) aaaaaaTTTACCG‑GACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca < 2:113123‑M1/149‑110 (MQ=255) aaaaaaTTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca > 2:350896‑M1/1‑40 (MQ=255) aaaaaaTTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgcggctggtgtatggagctgtgagcgca > 2:382419‑M1/1‑40 (MQ=255) aaaaaaTTTACCG‑CACTAGGCCCGTAGATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaacggaagtgcgtgaattctggggctggtggatagagctggaagcgcc > 2:8939‑M1/1‑40 (MQ=255) aaaaaaGTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgttcgttaattctggggctggtggatggagctggaagcgca < 2:286421‑M1/149‑110 (MQ=255) aaaaaTTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag > 1:545789‑M1/1‑39 (MQ=255) cG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt < 1:489068‑M1/149‑121 (MQ=255) cG‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacaggcaccggaaatgcgtgatttcagggggtggtggatgcagctggaaccgcggggaccccgtt > 2:634366‑M1/1‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta > 1:63887‑M1/1‑22 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac > 1:98758‑M1/1‑21 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca > 1:574905‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgggggctggagctggaagcgcaggaatcccgttttacctaca > 1:574924‑M1/1‑20 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt > 1:562987‑M1/1‑17 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 2:12159‑M1/1‑16 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac < 2:562987‑M1/149‑135 (MQ=255) gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt < 1:12159‑M1/149‑141 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg < 1:566853‑M1/149‑142 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgaggctggtggatggagctggaagagcaggaatcccgttttacctacagttaccagtttg > 2:213336‑M1/1‑8 (MQ=255) ggaAGGTAagcgcaaagataatcgattccttttcgattgactggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg < 2:554958‑M1/148‑142 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgctttacctacagttaccagttttgtctg > 1:14077‑M1/1‑3 (MQ=255) | ACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑CACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA > NC_000913_3_vch_tpiA/257759‑258053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |