New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	23 (0.600)	6 (0.170)	6/266	4.0	19.2%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	29 (0.810)					noncoding (4543016/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACT  >  NC_000913_3_vch_tpiA/4542877‑4543159                                                                                                                                            |                                                                                                                                                 tCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaa                                                                                                                                         >  2:414281/1‑149 (MQ=255)    aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACACTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAACTGGCCGCAAATg                                                                                                                                      >  2:41638/1‑149 (MQ=255)                 atgtatctctcCAAAAACCAGCTGATGCAATATAAAAATCTAAAAATAGAGATAACAATAGAATATTAAGCCAACAAATAAGCTTAAAAGGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                         <  2:379640/144‑1 (MQ=255)                 aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                         <  1:107173/149‑1 (MQ=255)                  ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAAAATATTAAGCCAACAAATAAACTGAAAAAGTTAGTCCGCGATGCTTTCCTCTATGAATCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                        >  2:615332/1‑149 (MQ=255)                     ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAACTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATCAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggggc                                                                                                                     >  2:52163/1‑148 (MQ=255)                        tctcCAGAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa‑a                                                                                                                 <  2:138561/149‑1 (MQ=255)                            cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACtgt                                                                                                             <  2:429117/149‑1 (MQ=255)                             aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATCTTAGGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACtgtg                                                                                                            <  1:660555/149‑1 (MQ=255)                                    accTCATGCAATAAAAACATATAAAAATAAAGAAAACAATAGAATATTAAGCCAACAAATAAACTGAGAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGtt                                                                                                     <  2:582053/149‑1 (MQ=255)                                     ccTCAGTCAATATAAACATCTAGAAATAAAGGGAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTg                                                                                                    <  2:497059/149‑1 (MQ=255)                                              atatAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGTGGAAA‑ACTGTGCAGCGTTGGCAGTCaaa                                                                                           >  2:666812/1‑149 (MQ=255)                                                ataAACACCTATAAATAAAGATAACAATCGAATATTAAGCCAACAAATAAACAGAAAAAGTTTGTCCGCGATGCTTTCCTCTATAAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGAGGACA‑ACTGTGCAGCGTTGGCAGTCaaatt                                                                                         >  2:633538/1‑147 (MQ=255)                                                      aTCTATAAATAAAGATAAAAATAGCCGATGAAGCGAACTAAAACAGTAGGAAGGTTTGTCCGCGATGCTTGCCTGTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                   <  1:658227/149‑1 (MQ=255)                                                           taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                              >  2:641028/1‑149 (MQ=255)                                                             aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                            >  1:88081/1‑149 (MQ=255)                                                               gaaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAACAATG‑GCTTTTTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                          <  1:666812/148‑1 (MQ=255)                                                                         aaTAGAATATTAAGCCAACAAATAAACGGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGGCAAAATGGCCCCGAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGac                                                                >  2:572934/1‑148 (MQ=255)                                                                                 atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                                                        <  1:237187/149‑1 (MQ=255)                                                                                  ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTCGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                       >  1:350241/1‑149 (MQ=255)                                                                                   tAAGCCAACAAATAAACTGAAAAAGGTTGTCCGCGATGCTTGCCTCTAGGAGTCAAAATGGCCCCAAATGTTTCATCTGTTGTGGGAAA‑ACTGTGCAGTCTTCGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGCACGTCTGCCCa                                                      <  2:3820/149‑1 (MQ=255)                                                                                    aaGCCAACAAATAAACTTAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAATGACTGCCCAt                                                     <  2:336175/149‑1 (MQ=255)                                                                                              atcaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAg                                           <  1:651137/146‑1 (MQ=255)                                                                                                    tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAGGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTAGAAAACAAAGTGTACAGAACGACTGCCCCTGTCGCTTTAAAAAtcg                                     >  2:633629/1‑147 (MQ=255)                                                                                                                                    gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa     <  2:88081/149‑1 (MQ=255)                                                                                                                                     aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaaa    <  1:641028/149‑1 (MQ=255)                                                                                                                                      gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAc   >  1:599435/1‑149 (MQ=255)                                                                                                                                      gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAc   >  1:267894/1‑149 (MQ=255)                                                                                                                                       tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct  >  1:407841/1‑149 (MQ=255)                                                                                                                                       tCAAAATGGCCCCAAATGATTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACACGTTTAAAAAACAAAGTGTACAGAAAGACTGACCATGTCGATTTAGAAATAGATTTTTGAAAGGAAATCAGCATGAAAATTAAAAct  >  1:244842/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                 TCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAA‑ACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACT  >  NC_000913_3_vch_tpiA/4542877‑4543159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.