BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 311148	526 (0.370)	340 (0.190) +TATA	89/192	34.2	33.6%	intergenic (‑71/‑243)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
*	?	CP016816	311149 =	724 (0.400)	340 (0.190) +TATA	89/192	34.2	33.6%	intergenic (‑72/‑242)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1064 total aligned reads displayed.

TGTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311021‑311275

 gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcatt‑cat‑‑‑‑t                                                                                                                                   >  1:690687/1‑128 (MQ=255)

 gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATTCGATTCAAAACATATATAACATAcatt‑cat‑‑‑‑t                                                                                                                                   >  1:2790554/1‑128 (MQ=255)

   aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACATGTTACATACGAATCAAAACAGATAAAACATACATT‑CAT‑‑‑‑tat                                                                                                                                 >  1:545072/1‑128 (MQ=255)

         tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatat                                                                                                                           >  1:2682126/1‑128 (MQ=255)

         tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatat                                                                                                                           >  1:2597978/1‑128 (MQ=255)

          gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatata                                                                                                                          >  1:371351/1‑128 (MQ=255)

           taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatat                                                                                                                         >  2:5965/1‑128 (MQ=255)

             ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatat                                                                                                                       >  1:2254957/1‑128 (MQ=255)

             ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatat                                                                                                                       >  1:1944885/1‑128 (MQ=255)

               atatAATACAAATGAACTTAAAATTGTAATTAACTTTTTTATTTTAAACACAACTTATTAAAAAATAAAATACTTTTTACATAATATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatat                                                                                                                     <  2:2973882/125‑1 (MQ=255)

               aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatat                                                                                                                     <  1:1063043/128‑1 (MQ=255)

               aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatat                                                                                                                     >  2:331667/1‑128 (MQ=255)

                aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CCT‑‑‑‑tatatatatatatata                                                                                                                    >  2:2822461/1‑128 (MQ=255)

                 cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatat                                                                                                                   >  1:1555156/1‑128 (MQ=255)

                 cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAAT‑CAT‑‑‑‑tatatatatatatatat                                                                                                                   >  1:1639905/1‑128 (MQ=255)

                  tAATCAAAATTATCTTAAAATATTTTTTAAATTTTTTTTTTTTAACACACCTTTTTAAAAAATATAATATTTTTTACATAATATTAAAAAAATATATATAATATATT‑TTT‑‑‑‑tatatatatatatatata                                                                                                                  <  2:1583062/128‑1 (MQ=255)

                  tAATCAAAATTAAATTAAAATTGTAATTAAATTTTTTATTTTATACACACCTTTTTATAAAATAAAATACTTGTTAAATAAGATTCAAAAAATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatata                                                                                                                  <  2:2914619/128‑1 (MQ=255)

                      acataagtaattAATATTTTATTTAACTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTAAATAAGATTATAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatata                                                                                                              <  2:690687/118‑1 (MQ=255)

                      acAAATTAAATTAAAATTGTATTTAAATTTTTAATTTTACACACACCTTATTAAAAAATAAAATAATTGTTAAATAAGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatata                                                                                                              <  2:3627512/127‑1 (MQ=255)

                      acAAATGAACTTAAAATTCTAAATAAATTTTTCATTTTACACACAACATATTAAAAATAAAAATAATTTTTAAATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatata                                                                                                              <  1:1009770/127‑1 (MQ=255)

                       cAAATCAACTAAAAATAGTAATTAAATTTTTAATTTTAAACACACCTTATTAAAATATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatatat                                                                                                             <  1:3655810/128‑1 (MQ=255)

                          aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatatatata                                                                                                          >  2:2778960/1‑128 (MQ=255)

                           tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATa‑a                                                                                                        >  2:3840862/1‑128 (MQ=255)

                            gAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑t                                                                                                      >  2:2287341/1‑128 (MQ=255)

                             aaCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatatatatataa                                                                                                       >  2:1357863/1‑125 (MQ=255)

                              aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑tta                                                                                                    >  2:2168196/1‑126 (MQ=255)

                              aCTTAAAATTGTAATTAAATTTTTAATTTTAAACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGc                                                                                                    <  2:2381764/128‑1 (MQ=255)

                                  aaaaTTGTAATTAACTATTTCATTTTAAACACACATTATTAAAAAATAAAATACTTGATAAATACGATTCAAAAAATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATg                                                                                             <  1:1332656/128‑1 (MQ=255)

                                   aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGAA‑atat                                                                                              >  2:3394502/1‑128 (MQ=255)

                                    aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATGTATAACATACATT‑CAT‑‑‑‑tatatatatatatatatatatataataaaatattaa                                                                                                >  1:2932279/1‑116 (MQ=255)

                                    aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTCA‑atata                                                                                             >  2:128149/1‑127 (MQ=255)

                                    aaTAGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATATCATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATg                                                                                             <  1:2013330/128‑1 (MQ=255)

                                    aaTAGTAATTAAATATTTAATTTTAAACAACACATATTAAAAAATAAAATAATTGTTAAATAAGATTCAAAACATATATAAAATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATg                                                                                             <  1:2534072/128‑1 (MQ=37)

                                     aatttcaTTAAATTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTAAATAAGATTCAATACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGt                                                                                            <  2:3021945/122‑1 (MQ=38)

                                         tAATTAAATTTTTCATTTTAAAAACAAATTATTAAAAAATAAAATAATTGTTACATACTATTAAAAACATATATAAAATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAAt                                                                                        <  1:2832387/128‑1 (MQ=37)

                                          atatatatttttAATTTTAATCAAACATTATTAAAAAATAAAATATTTGTTTAATAATATTTAAAATATATATAAAATACATT‑TTT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATg                                                                                       <  2:912887/121‑1 (MQ=255)

                                            ttAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGaa                                                                                     <  1:2739490/128‑1 (MQ=255)

                                                   tttCATTTTACACAACACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAatat                                                                                <  1:1463475/128‑1 (MQ=255)

                                                        ttttATACACAACTTTATTAAAAATAAAATATTTGTTATATAAGATTCAAAACATATATAAAATACATT‑AATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGtat                                                                           <  1:1860697/128‑1 (MQ=255)

                                                        ttttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATTATTTTATAAATT‑A‑TTCA‑ATATGTAAAAGAAAATATGTTaaaa                                                                         >  2:2480498/1‑128 (MQ=255)

                                                         tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TTCA‑ATATGTAAATTAAAATATTTtata                                                                          >  2:3747270/1‑128 (MQ=255)

                                                         tttACACACCACTTATTATAAAATAAAATACTTGTTACATAAGATTAAAAAAATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAg                                                                      <  1:3070067/128‑1 (MQ=255)

                                                         tttAAACACACCTTATTAAAAAATAAAATACTTGTTAAATAAGATTCAAAAAATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAg                                                                      <  2:1903074/128‑1 (MQ=255)

                                                         tttAAACACAACTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGtata                                                                          <  1:1375970/128‑1 (MQ=255)

                                                           tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATTTAAATTAAAATATGTTataat                                                                        >  2:3041107/1‑128 (MQ=255)

                                                           tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATAAA‑A‑TGCA‑ATATGTAATTGAAAATATGTTATAATAg                                                                      >  1:2485294/1‑128 (MQ=255)

                                                            acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATCTAAATTAAAATATTTTataata                                                                       >  2:1427703/1‑128 (MQ=255)

                                                               cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGTTATAATAGCAAcat                                                                >  1:621366/1‑126 (MQ=255)

                                                                 ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑ATAA‑ATATTTAAATGAAAATATTTTATAATAGCaaa                                                                  >  2:2048174/1‑127 (MQ=255)

                                                                   ccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑ATAA‑ATATATAAAATAAAATATATAATAATATAAACAGtt                                                              >  1:3404965/1‑128 (MQ=255)

                                                                     ttattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTCA‑ATATATAAATTAAAATATTTTataatacaaaaatttta                                                            >  2:404491/1‑117 (MQ=38)

                                                                      tattaAAAAATAAAATACTTTTTAAATACTATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                             <  2:2532531/128‑1 (MQ=255)

                                                                      tattaAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                         <  1:2417671/128‑1 (MQ=255)

                                                                      tataaAAAAATAAAATACTTGTTACATAAGATTAAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  2:3123529/128‑1 (MQ=255)

                                                                       attaTAAAATAAAATATTTGTTTCATATTATTAAAAAAATATATATAATAAATT‑AAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                        <  2:1638596/128‑1 (MQ=255)

                                                                       attaAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATATA‑AATATATATATAAATAAAAATATTTTATAATAAAAACCTTTta                                                            >  2:1700802/1‑128 (MQ=255)

                                                                           aaaaaTAAAATAATTTTTACATAAGATTCAAAACATATATAACATACATT‑AAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                      <  1:404491/128‑1 (MQ=255)

                                                                            aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATAAATATATATA‑A‑GGAA‑ATATCTAAATGAAAAAATGGAATAAAAACAAACgatgtaaaagta                                                     >  2:2094178/1‑117 (MQ=255)

                                                                             aaataaaataTTTGTTAGATAATATTCTAAAAATATATAACATAAATT‑AATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                      <  2:3889651/128‑1 (MQ=255)

                                                                                taaaataTTTTTTACATAATATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                   <  2:3247166/128‑1 (MQ=255)

                                                                                      aattGTTACATACTATTCAAAACATATATAACATATATT‑AAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                         <  1:2165688/126‑1 (MQ=255)

                                                                                      aCTTTTTACATAAGATTCAAAAAATATATAACATAAATT‑TAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGt                                           <  2:753441/128‑1 (MQ=39)

                                                                                       cTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATTTAAATTAAAATATTTTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTa                                          >  1:2362375/1‑128 (MQ=39)

                                                                                        ttGTTACATAAGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGt                                           <  1:3206851/128‑1 (MQ=255)

                                                                                         ttttAAATAAGATTCAAAAAATATATAACATAAAAT‑CTA‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                        <  2:828744/126‑1 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATTAAAATGAAAATATTATATAATATCAACAGTTTATAAAGTAAAAAAataata                                          >  2:2305496/1‑128 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCCACCGTTTATAAAGTAAAAAAATAGTaaa                                        >  1:3028728/1‑128 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAAATAAAATATGTTATAATATAACACGGTTATAACGTAAAAAAATATTaaa                                        >  2:1116548/1‑128 (MQ=37)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATA‑A‑ATATATATATATA‑A‑AGCA‑ATATGTAAATGAAAATATTGTATAATAGCAACAGTTTATAAAGTAAAAAAATA‑TAAatta                                     >  1:3360475/1‑126 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTAA‑ATATGTAAATGAAAATATTGTATAATATCACCCGTTTATAAAATAAAAAAATaataaata                                      >  2:513196/1‑128 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGTTATAATATCAACCTTTTATAAAGTAAAAAAATACAAAata                                      >  1:3768305/1‑128 (MQ=255)

                                                                                            tACATACGATTCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑AACA‑ATATATAAATAAAAATATTTTATAATAACAACCGTTTATAAATTAaaaaaataaaaaat                                       >  2:2208737/1‑128 (MQ=255)

                                                                                               ataataTTTAAAAAATATATAAAATAAATA‑TAT‑‑‑‑TATATATATATATATATATATATATATATTGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAtata                                    <  2:3933864/123‑1 (MQ=255)

                                                                                               aaaataTTTAAAACAAATATAAAAAAAATA‑TAT‑‑‑‑ATTATATATATATATAAATATATATA‑A‑TGCA‑AAATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                  <  1:768892/123‑1 (MQ=255)

                                                                                               aTACTATTCATAACATATATAAAATACATT‑AAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                  <  2:1988454/128‑1 (MQ=255)

                                                                                                tACGATTCAAAACATATATAACATACATT‑CATTATATATATATATATATATATATATATATA‑A‑TTAA‑ATATGTAAATGAAAATATGTTATAATAGAAACCGTTTAAATAGTAAAAAAATAGTaaaaaa                                     >  2:3591484/1‑125 (MQ=25)

                                                                                                 aCGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑AGCA‑ATATGTAAATTAAAATATTTTATAATATCAACATTTTATAAAATAAAAATATAATAAATAtactac                                >  1:3902811/1‑128 (MQ=255)

                                                                                                   gATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTAA‑ATATTTAAAATAAAATATTTTATAATAGAAAAAGTTTATAAAGTAAAAAAATAATAAATATAATAAtt                              >  1:3132292/1‑128 (MQ=25)

                                                                                                    atttataaaatatatAAAATATAAT‑TAT‑‑‑‑TTTATAAATATATATATATATATATA‑A‑TGGA‑ATATGTAAATTAAAATATTGTATAATTTCAACCTTTTATTAATTAAATAAATAGTAAATATACTACTTa                             <  2:3073132/119‑1 (MQ=255)

                                                                                                    aTTCAAAACATATATAAAATACATT‑TAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                             <  1:2078718/128‑1 (MQ=255)

                                                                                                      tCAAAACATATATAACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑ATAA‑ATATGTAAATTAAAAAATTTTATAATAGCAACAATATATAAATTAAAAAAATAGTAAATATactactat                             >  2:1189549/1‑126 (MQ=255)

                                                                                                       cAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAttt                          <  1:1152383/128‑1 (MQ=255)

                                                                                                           aCATATATAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGTTATAATAGCAAACGTTTATAAAGTAAAAATATATTAAATATAATAATTATTTaataat                    >  2:1529348/1‑128 (MQ=255)

                                                                                                             atatatAACATACATT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTAA‑ATATTTAAATAAAAATATGTTATAATATCAACAGTTTATAAATTAAAAAAATAGTAAATATAATTATTATTtaataataa                  >  2:1766480/1‑128 (MQ=255)

                                                                                                              tatataTTATACATT‑GTT‑‑‑‑TATATATATATATATTTATATATATA‑A‑TGCA‑ATAATTAAATGAAAATATGGTATAATAGCAACCGTTTATTATGTAAAATACTAGTAAATATACTACTTATTTACtaata                   <  1:858774/128‑1 (MQ=255)

                                                                                                              tatataTCATACATTATATA‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                     <  1:3532803/128‑1 (MQ=255)

                                                                                                              tatataACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATATACtaata                   >  1:3297030/1‑128 (MQ=255)

                                                                                                               atataACATACATT‑CATTA‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                    <  1:482730/128‑1 (MQ=255)

                                                                                                                tataACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑T‑TGCA‑ATATGTAAATGAAAATATGTTATAATATCAACCGTTTATAAAGTAAAAAAATAGAAAATATACTACTTATTTACtaataat                 >  1:1110149/1‑127 (MQ=255)

                                                                                                                 ataACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATTTAAATGAAAATATTCTATAATATCAACATTTTATATATTAAAAAAATATTAAATATAATAATAATTAAATAATaaaa                >  1:3602708/1‑128 (MQ=25)

                                                                                                                 ataAAATATATT‑ATT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                <  2:3692116/128‑1 (MQ=255)

                                                                                                                  taACATAAAAT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt               <  1:979486/128‑1 (MQ=255)

                                                                                                                    atatacatT‑TAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt             <  2:1041263/126‑1 (MQ=255)

                                                                                                                     catacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGTTATAATAGCACCAGATTATAAACTAAAAAAATATTAAATATACTAATTTTAAAATAATAAAATCTa            >  2:2599419/1‑128 (MQ=37)

                                                                                                                     aatacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTa            <  2:3525981/127‑1 (MQ=255)

                                                                                                                      atacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTCA‑ATATGTAAATGAAAATATTATATAATATAAAAAGTTTATAAACTAAAAAAATAGTAAATAAACTACTTATTTACAAATAatatatat           >  1:1258209/1‑128 (MQ=37)

                                                                                                                      atacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt           <  2:2685466/128‑1 (MQ=255)

                                                                                                                       tacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATTAAAATATGGTATAATAGCAACAGTTTATATATTAAAAAAATAGTAAATATAATACTTATTTACTAATAAAATCTAtt          >  1:1782666/1‑128 (MQ=39)

                                                                                                                       tacatT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATTGTATAATATCAACAGTTTATAAAGTAAAAAAATAGAAAATATACTAATTATTTACTAATAAAATCTAtt          >  1:3826633/1‑128 (MQ=39)

                                                                                                                       tacatT‑CAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTAA‑ATATGTATATGAAAATATTGTATAATAGAAACAATTTATAAATTAAAAAAAAATTAAATATACTAATTATTTAATAATAATATATAtttt        >  1:1713227/1‑128 (MQ=255)

TGTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑CAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311021‑311275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.