BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	496355 =	1948 (1.070)	89 (0.050)	54/232	60.2	4.8%	intergenic (‑55/+29)	JCVSYN2_02275/JCVSYN2_02280	HPr(Ser) kinase/phosphatase/ECF transporter S component
*	?	CP016816	496379 =	1767 (1.060)	89 (0.050)	54/232	60.2	4.8%	intergenic (‑79/+5)	JCVSYN2_02275/JCVSYN2_02280	HPr(Ser) kinase/phosphatase/ECF transporter S component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1984 total aligned reads displayed.

TTTCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATAAAACTAATTC  >  CP016816/496252‑496506

tttCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTa                                                                                                                                 >  2:307528/1‑128 (MQ=255)

 ttCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTAt                                                                                                                                <  1:1191842/128‑1 (MQ=255)

  tCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATc                                                                                                                               <  1:946517/128‑1 (MQ=255)

  tCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATc                                                                                                                               >  1:3090569/1‑128 (MQ=255)

   cAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTACTTTTAAAAGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCa                                                                                                                              <  2:3320038/128‑1 (MQ=255)

     aaTTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATc                                                                                                                               <  2:2222735/125‑1 (MQ=255)

     aaTTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATc                                                                                                                               >  1:2222735/1‑125 (MQ=255)

     aaTTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAAt                                                                                                                            >  2:3385272/1‑128 (MQ=255)

      aTTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAAtt                                                                                                                           >  1:3954740/1‑128 (MQ=255)

      aTTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAAtt                                                                                                                           <  2:3476413/128‑1 (MQ=255)

        tttAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAg                                                                                                                         >  1:3600811/1‑128 (MQ=255)

           aGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGAACTTTTTATCAATTATAat                                                                                                                      >  2:1023957/1‑128 (MQ=255)

             aTTATCAGTAAGATCTTTTATTGTAAATTTTTCCATATAATATACTTTTAATCGATAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAatat                                                                                                                    <  1:265033/128‑1 (MQ=255)

              ttATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATAtt                                                                                                                   <  1:709860/128‑1 (MQ=255)

              ttATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATAtt                                                                                                                   <  1:3555368/128‑1 (MQ=255)

                aTCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTAc                                                                                                                 >  2:596461/1‑128 (MQ=255)

                 tCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACa                                                                                                                <  2:2301065/128‑1 (MQ=255)

                    gTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGca                                                                                                             >  2:3796992/1‑128 (MQ=255)

                         aTCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAATTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCAtt                                                                                                        >  1:2710279/1‑128 (MQ=255)

                            ttttATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCt                                                                                                     >  1:3741599/1‑128 (MQ=255)

                                 tGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAata                                                                                                >  1:3833002/1‑128 (MQ=255)

                                   gTAAATTTTTCCATATAATCTCCTTTTAAACG‑TAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTc                                                                                             <  1:2047885/128‑1 (MQ=255)

                                   gTAAATTATTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATAtt                                                                                              <  1:1087757/128‑1 (MQ=255)

                                    tAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTc                                                                                             <  2:529933/128‑1 (MQ=255)

                                    tAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTc                                                                                             <  1:3888138/128‑1 (MQ=255)

                                    tAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTc                                                                                             <  1:298930/128‑1 (MQ=255)

                                     aaaTTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCa                                                                                            <  2:2897315/128‑1 (MQ=255)

                                     aaaTTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCa                                                                                            >  2:3555629/1‑128 (MQ=255)

                                     aaaTTTTTCCATATAATCTCCTTTTAAAAGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCa                                                                                            <  2:1430622/128‑1 (MQ=255)

                                      aaTTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGcatcat                                                                                                         >  2:1507684/1‑114 (MQ=255)

                                      aaTTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCAt                                                                                           >  2:71683/1‑128 (MQ=255)

                                      aaTTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCAt                                                                                           >  1:149227/1‑128 (MQ=255)

                                        tttttCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTg                                                                                         >  1:2778782/1‑128 (MQ=255)

                                        tttttCAATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTg                                                                                         <  2:3884336/128‑1 (MQ=255)

                                         ttttCGATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGt                                                                                        <  1:2331680/128‑1 (MQ=255)

                                          tttCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTc                                                                                       <  2:3954740/128‑1 (MQ=255)

                                          tttCAATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTc                                                                                       <  2:2606390/128‑1 (MQ=255)

                                            tcaatatAATCTCCTTTTAAACGGTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAATAAGTGCTTGCTAGCACTTTTTATCAATTAGAATAATACAGAATCATTTCTTAATATTCATTGTCTa                                                                                     <  1:2590048/125‑1 (MQ=255)

                                                tataATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAATTGATTGCTAGCACTTTTTATAAATTAGAATATTCAAGCTTCATTTCTTAATATTCATTTTCTAtttt                                                                                 >  2:2967770/1‑128 (MQ=255)

                                                 ataATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGt                                                                                        <  2:2533829/120‑1 (MQ=255)

                                                  taATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTAtttttt                                                                               >  2:1723202/1‑128 (MQ=255)

                                                    aTCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGt                                                                             >  1:2874961/1‑128 (MQ=255)

                                                    aTCTCATTTTAAACGTTAATATTATTTTTCTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGt                                                                             <  1:2405943/128‑1 (MQ=255)

                                                       tcCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTAtt                                                                          <  2:2683384/128‑1 (MQ=255)

                                                         cTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTa                                                                        >  2:1353268/1‑128 (MQ=255)

                                                             tAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATc                                                                    <  2:1818833/128‑1 (MQ=255)

                                                              aaaCGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCt                                                                   >  2:3620452/1‑128 (MQ=255)

                                                                aagTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTATATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCttt                                                                 <  1:483951/126‑1 (MQ=255)

                                                                 cGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCtttt                                                                <  1:3243688/128‑1 (MQ=255)

                                                                 cGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCtttt                                                                <  2:3704564/128‑1 (MQ=255)

                                                                  gTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCttttt                                                               <  1:1623136/128‑1 (MQ=255)

                                                                    tAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTtta                                                             >  2:923062/1‑128 (MQ=255)

                                                                      atatAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTttaat                                                           >  1:821987/1‑128 (MQ=255)

                                                                      atatAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTttaat                                                           >  1:2929774/1‑128 (MQ=255)

                                                                        ataATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTttaatta                                                         <  2:1218214/128‑1 (MQ=255)

                                                                        ataATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTttaatta                                                         >  1:1691831/1‑128 (MQ=255)

                                                                         taATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTttaattaa                                                        <  2:2801183/128‑1 (MQ=255)

                                                                                 cTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGa                                                <  1:2508195/128‑1 (MQ=255)

                                                                                   atatTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATc                                              <  2:1094092/128‑1 (MQ=255)

                                                                                    tatTAATGTTTATACAT‑AAAAAAAGTGCTTGCTATCACTTTTTATCTATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCa                                             <  1:633768/128‑1 (MQ=255)

                                                                                     atTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATAATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTATTAATTAAAATATAGATCAc                                            >  1:2095683/1‑128 (MQ=255)

                                                                                      ttAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCAct                                           >  1:1552424/1‑128 (MQ=255)

                                                                                        aaTGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTg                                                                              >  2:2060480/1‑91 (MQ=255)

                                                                                        aaTGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTa                                                                            <  1:347349/93‑1 (MQ=255)

                                                                                        aaTGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCActct                                         >  1:557824/1‑128 (MQ=255)

                                                                                        aaTGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCActct                                         >  2:2497884/1‑128 (MQ=255)

                                                                                          tGTTTAAACATAAAAAAAAGTGCTAGCTAGCAATTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCtt                                        <  2:2152898/128‑1 (MQ=255)

                                                                                          tGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTa                                       >  1:1009727/1‑128 (MQ=255)

                                                                                            tttAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTAtt                                     <  1:763489/128‑1 (MQ=255)

                                                                                            attAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTAtt                                     <  2:1891465/127‑1 (MQ=255)

                                                                                             ttAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTg                                    <  2:446646/128‑1 (MQ=255)

                                                                                              tAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGa                                   >  1:1316755/1‑128 (MQ=255)

                                                                                              tAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGa                                   <  1:332383/128‑1 (MQ=255)

                                                                                                aaCAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAg                                 >  1:3678101/1‑128 (MQ=255)

                                                                                                aaCAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAg                                 <  2:2435839/128‑1 (MQ=255)

                                                                                                  cAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATAATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTATTTAATTAAAATTTAGATCACTCTTATTGAAGCa                               >  1:1127113/1‑128 (MQ=255)

                                                                                                   at‑aataAAAGTGCTTGCTAGCACTTTTTTTCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCAt                              <  2:1162058/128‑1 (MQ=255)

                                                                                                   aT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAATCAt                              >  2:852145/1‑128 (MQ=255)

                                                                                                   aT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCAt                              <  1:1879823/128‑1 (MQ=255)

                                                                                                    ttataaaaaGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCAt                              <  1:1740067/124‑1 (MQ=255)

                                                                                                    t‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATa                             >  1:428758/1‑128 (MQ=255)

                                                                                                      aaaaaaaGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCAt                              <  2:1281407/126‑1 (MQ=255)

                                                                                                         aaaaGTGGTTGCTAGCACTTTTTATCAATTAGAATATTACAGAATCATTTCTTAATATCCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGtt                         <  2:2742484/128‑1 (MQ=255)

                                                                                                         aaaaGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGtt                         <  1:1268460/128‑1 (MQ=255)

                                                                                                           aaGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTaa                       >  1:1379717/1‑128 (MQ=255)

                                                                                                            aGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTTTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAAt                      >  2:3137364/1‑128 (MQ=255)

                                                                                                            aGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATATATCACTCTTATTGAAGCATAAGTTAAt                      >  2:775604/1‑128 (MQ=255)

                                                                                                                cttgctAGCACTTTTTATGAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTg                  <  2:1592504/128‑1 (MQ=255)

                                                                                                                  tgctAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGaa                >  1:1815407/1‑128 (MQ=255)

                                                                                                                  tgctAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTATTTTAATTAAAATATAGATCACTCTTATTGAAGAATAAGTTAATAGTTaa                >  1:2463862/1‑128 (MQ=255)

                                                                                                                     tAGCACTTTTTATCAATTAGAATATTACAGCATCATTACTTAATATTCAATGTCTATTTTTGGTATTTATATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAatat             >  2:1994807/1‑128 (MQ=255)

                                                                                                                      aGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAAtata            >  1:1416023/1‑128 (MQ=255)

                                                                                                                      aGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAAtata            >  1:881801/1‑128 (MQ=255)

                                                                                                                      aGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAAtata            >  1:3166035/1‑128 (MQ=255)

                                                                                                                      aGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAAtata            >  2:3252361/1‑128 (MQ=255)

                                                                                                                       gCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATaa           >  1:3388194/1‑128 (MQ=255)

                                                                                                                         aCTTTTTATAAATTAGAATATTACAGTATCATTTCTTAATATTCATTTTCTATATTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATaaaa         <  2:1656902/128‑1 (MQ=255)

                                                                                                                              ttATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAATCATAACTAAATAGACAATATAAAACTAAt    >  2:2370313/1‑128 (MQ=255)

                                                                                                                              ttATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATAAAACTAAt    <  1:1960165/128‑1 (MQ=255)

                                                                                                                               tATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATAAAACTAAtt   >  1:2154813/1‑128 (MQ=255)

TTTCAAATTTTAGATTATCAGTAAGATCTTTTATGGTAAATTTTTCCATATAATCTCCTTTTAAACGTTAATATAATTTTACTATATTAATGTTTAAACAT‑AAAAAAAGTGCTTGCTAGCACTTTTTATCAATTAGAATATTACAGCATCATTTCTTAATATTCATTGTCTATTTTTTGTATTTAAATCTTTTTTAATTAAAATATAGATCACTCTTATTGAAGCATAAGTTAATAGTGAATATAAAACTAATTC  >  CP016816/496252‑496506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.