Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4880TA31.7% 155.2 / 85.0 235intergenic (+266/‑409)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (55/68);  new base A (17/40);  total (83/152)
Fisher's exact test for biased strand distribution p-value = 7.21e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 280 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑A‑‑AAA‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTAT  >  CP016816/202369‑202615
                                                                                                                        |                                                                                                                                       
aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCC‑‑attaa‑‑‑a‑‑aat‑t‑aaaa                                                                                                                       >  1:3341020/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCACC‑‑‑aaa‑‑‑a‑‑aaa‑t‑aaaaaa                                                                                                                     >  2:1577772/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑a‑‑‑a‑‑aaa‑t‑aaaaa                                                                                                                      >  2:912992/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACATTAaaa‑‑‑a‑‑aaa‑a‑aa                                                                                                                         >  2:1009301/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaa                                                                                                                   >  2:3677425/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa                                                                                                                  >  2:3632314/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaa                                                                                                             >  2:3008238/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaa                                                                                                             >  2:3366490/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaa                                                                                                             >  2:3500837/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaa                                                                                                             >  2:3702872/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATAACCTCGTTATATATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaa                                                                                                            <  1:288926/128‑1 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTAATTTATCTACAAAAAT‑AAAAAAAAAAAAATCAAAAT‑‑‑A‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaa                                                                                                          >  2:1910970/1‑128 (MQ=255)
             tggTTAATTAAATTAAATAAAACTTAATAATTTTTTTAAT‑TTTATCCTGGGGTTATATTTTTTTTTTTTTTTTAATTAAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaa                                                                                                          <  1:3034977/127‑1 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATTAaaa‑‑‑a‑‑aaa‑a‑aaaaaaaaa‑aaaaa                                                                                                            >  2:499919/1‑128 (MQ=255)
              ttttaataaaAATAAAAAAAAATTAAAAATTATTAAAATTTATATAATATTTATATATTTTTTTATTTGTTTATATTCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaa                                                                                                         <  1:1879241/126‑1 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaa                                                                                                         >  2:3538457/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaa                                                                                                         >  2:3861398/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAA‑‑‑A‑‑AAA‑T‑taaaaaaaa‑aaaaaaaaa                                                                                                        >  2:2533912/1‑128 (MQ=255)
               gTTAATTAAAATAAAATAAAATTAATAATTAATAAAATTTATATCATAGTTATCTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaa                                                                                                        <  1:1884577/128‑1 (MQ=255)
                ttatttaaAATCCTATAAA‑TTTATAATTATTATAATTTATATACAAGTTATCTAATTTTTAATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaac                                                                                                      <  1:2381534/128‑2 (MQ=255)
                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑AATAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaa                                                                                                       >  2:1387662/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAAACAC‑‑ATAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                     >  1:3532206/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTATTAATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑CCAAATAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaaaa                                                                                                      >  2:3973356/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                     >  2:2048693/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑ACAATTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                                    >  1:3700626/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATACTTATAATGTAGATCAACTAGATCTAATTTTATATTTATTAAACTTCACAAAA‑AAAAAAAAAAAAAACCC‑‑‑AAAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaaaaaa                                                                                                   >  2:1716103/1‑126 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAATACC‑CTAAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                                    >  2:2287913/1‑127 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCATATAATGTATATACTCTTTATCTATTATTTTATTAGTTTAAAATAAAAAAT‑AAAAAAAAAACAAACAC‑‑‑ATAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaaaaaaa                                                                                                  >  2:3109161/1‑125 (MQ=255)
                     taaAATACCATAAAATTAATAAATATTATAATTTTTATCATCGTGTTTTTTTTTTTTATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaaactaaa                                                                                                  <  2:309209/128‑6 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACAaaaa                                                                                               >  2:3257135/1‑128 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATATTTATATTCACAAAT‑AAAAAAAAAAAAA‑‑ACAAATTAA‑‑‑A‑‑AAA‑T‑aaaaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                >  1:310070/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATACTCTAGATCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATAAA‑‑‑A‑‑AAT‑T‑aaaaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                >  2:2658250/1‑123 (MQ=255)
                       aaaTACAAAAAACTTAATAATTATTAAAATTTATATCATAGTTTTATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAA‑‑CCC‑ATTAA‑‑‑A‑‑AAA‑T‑‑AAAAAAAA‑AAAAAAAAAAAACTaaaaa                                                                                              <  1:3187512/128‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTATTTAATTATTTATATTCACAAAT‑AAAAAAAAAACAA‑‑ACAAAATAA‑‑‑A‑‑AAT‑T‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                               >  1:429111/1‑128 (MQ=255)
                          aaacATAAAATTAATAATTATTAAAATATACATACTCCTTTACAATTTTTTTATTTGTTTAAATTCAAAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAaaaca                                                                                            <  1:2494839/125‑1 (MQ=255)
                            acaaaaaaTTAATAAATATTATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                                          <  1:1355799/124‑1 (MQ=255)
                            acaaaaaCATAATAATTATTATAATTTAGATCCACGGTTTCTATTTTTTTTTTTTTTTATTTTCAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                                          <  2:3228155/124‑1 (MQ=255)
                              ataatattAATAATTATTATAATTTTTAAACTCGTGATTTATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAActc                                                                                       <  2:1098317/122‑1 (MQ=255)
                              aaaaaaTTAATAATTATTATAAATTATATCCTCTTTATATATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                                          <  1:3059382/126‑1 (MQ=255)
                                 aaCTTAATAATTATTAAAATTTATATAATTGTTTTCTATTTTTTTATTTTTTTATTTTAACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  1:3280606/128‑1 (MQ=255)
                                  aattAATAATTATTATAATTTATATCATCTTGATCTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  1:3482799/126‑1 (MQ=255)
                                   attAAAAATTTTTATAATTTATATACAATTTATTTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  1:2984129/127‑1 (MQ=255)
                                     taaaaaTTTTTATAATTTAGTAACTCGTTATATTTTTTTTTTTTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                  <  2:3599478/128‑1 (MQ=255)
                                      aataaataTTATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑‑‑‑TAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                             <  1:3370337/128‑1 (MQ=255)
                                       ataatTATTATAATTTATATCCAGGTGATCTATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                <  1:3642137/128‑1 (MQ=255)
                                           atattATAATGTAGATCCTATTGATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                            <  1:1396094/125‑1 (MQ=255)
                                                aaaaTGTATATCCACCTTATCTATTTTTTTATTTTTTTATCTT‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                      <  1:2273837/126‑1 (MQ=255)
                                                         tagatctttttCTATTTTTTTTTTTTTTTAATTTTAAAAAT‑AAAAAAAAAAAAAT‑AACATTAAA‑‑‑A‑‑ATT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                               <  2:449123/118‑1 (MQ=255)
                                                          ttatttttttaaaTTTTTTTTTTTTTTTATATTAAAATAT‑AAAAAAAAAAAAATTCACTTT‑‑A‑‑‑A‑‑AAT‑T‑TAAAAAAAA‑AAAAAAAAAAAA‑TAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                            <  2:81037/116‑1 (MQ=255)
                                                           acatttttattATTTTTTTTTTTTTTTATTATAAAAAAA‑AAAAAAAAAAAAAATCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                            <  1:870736/118‑1 (MQ=255)
                                                           aattgttatatATTTTTTTTTTTGTTTAAGTACAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑A‑‑AAA‑T‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                           <  2:1230715/118‑1 (MQ=255)
                                                           aaaatttatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                            <  1:103008/118‑1 (MQ=255)
                                                             tctgtttttATTTTTTTTTTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑TAAAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                           <  2:3187591/120‑1 (MQ=255)
                                                             attttttatATTTTTTTTTTTTTTTATAAT‑AAAAAA‑AAAAAAAAAAAAATAAACTTAAAA‑‑‑A‑‑ATA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                           <  1:604065/120‑1 (MQ=255)
                                                              tttttaaaaTTTTTTTATTT‑TTTAAATATAAAAAA‑AAAAAAAAAAAAAAACCCTAAAAA‑‑‑A‑‑ATA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                          <  1:496533/120‑1 (MQ=255)
                                                                ttttttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                       <  1:543106/123‑1 (MQ=255)
                                                                ttatcttattatttATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑A‑‑AAA‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                       <  1:3503929/117‑1 (MQ=255)
                                                                ggATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAA‑TAAAAAAAACCTATATTTATAAAAATTACCTATTAAACCAAatttt                                                      >  2:3041419/2‑128 (MQ=255)
                                                                 attatatttttttattt‑tttATAATTAAAAAA‑AAAAAAAAAAAAAAAACCATT‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                     <  1:1188682/124‑1 (MQ=255)
                                                                  tatttattttttattttttaATTTTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACatttta                                                     <  2:2752800/122‑1 (MQ=255)
                                                                  taaattttttttATTTTTTAATTTTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑ATAAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                     <  1:3167109/123‑1 (MQ=255)
                                                                   atattttttttATTT‑TTAATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                   <  1:1173529/124‑1 (MQ=255)
                                                                      ttttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  2:403998/127‑1 (MQ=255)
                                                                       tttttttatttttttaTATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                               <  1:912992/128‑1 (MQ=255)
                                                                       tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                <  1:272589/128‑1 (MQ=255)
                                                                       tttttttATTT‑TTTATTTTAAAAAAT‑AAAAAAAAAA‑AAAAACCTTTTAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCATATTTTAttttt                                                <  1:2073840/128‑1 (MQ=255)
                                                                        ttttttttttttttATATTAACAAAA‑AAAAAAAAAAAAAATCCC‑TTAAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                <  1:3297069/128‑1 (MQ=255)
                                                                        ttttttttttttttATATTAAAAAAA‑AAAAAAAAAAAAAAACCATTAAAA‑‑‑A‑‑TTA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  2:76658/128‑1 (MQ=255)
                                                                        ttttttttttttTAAAATTTAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                               <  1:1214077/128‑1 (MQ=255)
                                                                        ttttttatttttttatATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                               <  2:3824318/128‑1 (MQ=255)
                                                                          ttttatttttttatttTAAAAAATAAAAAAAAAAACAATCCC‑‑AATAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                              <  2:3792918/128‑1 (MQ=255)
                                                                           tttATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑‑‑‑‑TAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                       <  1:3248191/128‑1 (MQ=255)
                                                                           tttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                             <  1:204223/128‑1 (MQ=255)
                                                                           tttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                             <  1:746761/128‑1 (MQ=255)
                                                                             ttttttttTATATTTAAAAAT‑AAAAAAAAAAAAATACC‑‑ATTAA‑‑‑A‑‑AAA‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                          <  2:2073814/126‑1 (MQ=255)
                                                                               ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATAACC‑TTAAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                         <  1:1444508/128‑1 (MQ=255)
                                                                               tttGTTTAAATTAAAAAAA‑AAAAAAAAAAAAATACCATTAAAA‑‑‑A‑‑TTA‑A‑AAAAAAAAA‑AAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                          <  1:2775978/128‑1 (MQ=255)
                                                                                 tGTTTATATTTAAAAAA‑TAAAAAAAAAAAATTCCCTTT‑‑‑‑‑‑A‑‑AAA‑T‑TTAAAAAAA‑AAAAAAAAAAAACTAAAAACTAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                     <  2:3322064/128‑1 (MQ=255)
                                                                                   ttttaattaaaaaaa‑aaaaaaaaaaaaATAACATTAAAA‑‑‑A‑‑TTA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                      <  1:3562884/117‑1 (MQ=255)
                                                                                     tttattataaaaa‑aaaaaaaaaaaaaaATACATTT‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                   <  2:2351129/119‑1 (MQ=255)
                                                                                     tatatttaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATTA‑‑AAA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                       <  1:3610189/119‑1 (MQ=255)
                                                                                     tataTTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                  <  2:3269553/128‑1 (MQ=255)
                                                                                       aattaaaaaaT‑AAAAAAAAAACAATCACATT‑‑‑A‑‑‑A‑‑AAA‑T‑‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                              <  1:2531339/121‑1 (MQ=255)
                                                                                         attaaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑A‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                               <  1:222754/123‑1 (MQ=255)
                                                                                          taaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAA‑AAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                             <  1:1511183/124‑1 (MQ=255)
                                                                                           cacaAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AAT‑T‑AAAAAAAAAGAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACaaa                             >  1:1784977/1‑126 (MQ=255)
                                                                                           aaaaaaa‑aaaaaaaaaaaaaaACCATTAAAA‑‑‑AATAAA‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                <  2:2985475/125‑1 (MQ=255)
                                                                                                aT‑AAAAAAAAAACAAT‑ACCATTAAA‑‑‑A‑‑ATT‑A‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                        <  1:3559447/128‑1 (MQ=255)
                                                                                                 taaaaaaaaaaaCAATCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑‑‑TAAAAAA‑AAAAAAAAAAAACTAAAAACAAAAACTATTAATTAAAATTCAATATTTTAAAAAATTTTTTTTTTAAAATAAGATATTAAAAAAttatataaa                    >  1:3127480/3‑126 (MQ=255)
                                                                                                 t‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑T‑‑AAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt                   <  1:3812424/128‑1 (MQ=255)
                                                                                                  aaaaaaaaaaaaaATACCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                     <  1:2614667/127‑1 (MQ=255)
                                                                                                     aaaaaaaaaaaaCCCCTT‑‑‑A‑‑‑A‑‑AAA‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa                  <  2:977206/128‑1 (MQ=255)
                                                                                                             aaaaaaaaatataa‑‑‑a‑‑ata‑taaaaaaAAAA‑AAAAAAAAAAAAATTAAAACAAACTATATTTATTAAAATTCACTATTATACCACATTTTATTTTTAAAATAATATATTTACATAATATATATCTAatat              <  1:1076018/117‑1 (MQ=255)
                                                                                                              aaaaaccacttaa‑‑‑a‑‑aat‑t‑aaaaaAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat            <  1:3973429/119‑1 (MQ=255)
                                                                                                                aaaacccataa‑‑‑a‑‑aat‑t‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat          <  1:3459007/120‑1 (MQ=255)
                                                                                                                 atacccataa‑‑‑a‑‑aaa‑t‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata         <  1:3231204/121‑1 (MQ=255)
                                                                                                                 aaaccattAA‑‑‑A‑‑AATTT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat          <  1:199088/122‑1 (MQ=255)
                                                                                                                  taaacataa‑‑‑a‑‑aat‑t‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  2:3619032/122‑1 (MQ=255)
                                                                                                                  ataacttAA‑‑‑A‑‑AAT‑T‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  1:3016598/123‑1 (MQ=255)
                                                                                                                   accattaa‑‑‑a‑‑aat‑t‑aaaaaAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat       <  2:3296566/124‑1 (MQ=255)
                                                                                                                        |                                                                                                                                       
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑A‑‑AAA‑T‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTAT  >  CP016816/202369‑202615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑