Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2710GT34.2% 1637.8 / 184.9 1135intergenic (‑554/+289)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base G (217/505);  new base T (350/25);  total (605/530)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1150 total aligned reads displayed.

CTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAA  >  CP016816/420141‑420398
                                                                                                                                        |                                                                                                                                
 ttttttAAAAAATTTTTATTTTTAATAAGTGAATTTTTTTTAAATTTGTTAAATTATTTTCAAATAATTATATA‑TTAATCAT‑TTTTATGCTG‑‑G‑‑‑‑TTTTTTTT‑TTTTTTACAATAATATAATTTATTTGa                                                                                                                                 <  1:2233960/128‑1 (MQ=255)
        aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTCTTT‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTTTTTTAtt                                                                                                                               >  1:1397483/1‑128 (MQ=255)
        aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATaaa                                                                                                                             >  1:2030724/1‑128 (MQ=255)
           aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATATATTTAATTaaaa                                                                                                                           >  1:3262372/1‑127 (MQ=255)
           aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTATTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAAct                                                                                                                          >  1:1539072/1‑127 (MQ=255)
           aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTATTTT‑TTTTTAAAAAAAATAAAATTTAATTTATTaaaaat                                                                                                                         >  1:1011335/1‑125 (MQ=255)
             tttttaatttaaatAACTGAATAATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATA‑TAAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTAAAAAAAAAATAATTTATTTTATATAACGta                                                                                                                        >  1:2991971/6‑128 (MQ=255)
              ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAAATtata                                                                                                                      >  1:1759437/11‑128 (MQ=255)
                 taatttttatAAATTAATTATTTTTTAAATTTTTTAATTATTTTTAAATAATTATATA‑TTAATAAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                                                   <  1:855156/120‑1 (MQ=255)
                  aattttaatAACTGAATTATTTTTAAAATTTTTAAATTATTTTAAATTCATTATCTA‑TTAATCAA‑TTTTATTCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                                                   <  1:3588203/122‑1 (MQ=255)
                   aatttaaaaaCTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATCAATAACTA‑TTAATAAA‑TTTTTTTCTC‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTa                                                                                                                  <  2:3710009/120‑1 (MQ=255)
                     tttaatAACTTAATTAATTTTCAAATTTTTAAATTTTTTTTAAATAATTATATT‑TTTATAAA‑TTTTATTCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATg                                                                                                                <  1:3231104/125‑1 (MQ=255)
                     tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTTATTTTTTAAAAAAAAATAATTTATTTATTTAAAAGTATATTTAt                                                                                                                 >  1:2503022/4‑128 (MQ=255)
                      ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAACATATATTAAttt                                                                                                               >  1:2091169/3‑126 (MQ=255)
                          tAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTT‑TTTTTTAAAAAAAAATAATTTATTTTATTAAAATTATATTTATTTTaaat                                                                                                          >  1:2569539/1‑128 (MQ=255)
                              tttattattTTTTATTTTTTTTAATTTTTTTATAATATTTTTTTA‑TTAATAAA‑TTTTTTTATT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                                       <  1:2727357/125‑1 (MQ=255)
                               ttattattTTTTATATTTTTTAATTTTTTTAAAATAATTATATA‑TTAATTAATTTTTTTTTTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                                       <  1:2297562/126‑1 (MQ=255)
                                tatttttTTTTAAATTTTTTAATTATTTTAAAATTATTTTTTA‑TTTATTAA‑TTTTAT‑TTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAAt                                                                                                    <  2:1221799/127‑1 (MQ=255)
                                 tttattTTTAAATTTTTTATTTTTTTTTAAAATATTTATTTT‑TTAATAAA‑TTTTTTGTT‑‑‑‑‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                                                  <  1:3178569/127‑1 (MQ=255)
                                   taattttTAATTTTTTAAATTTTTTTTAATTAAATTTTAT‑TTTATAAA‑TTTTTTGTTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                                                  <  2:1877522/125‑1 (MQ=255)
                                     tttttCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAAtttaa                                                                                                >  1:1078934/1‑124 (MQ=255)
                                      atattaaaTTTTTAAATTATTTTAAAATAATTTTATA‑TTAATAAA‑TTTTATTTTA‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaa                                                                                               <  2:3875131/123‑1 (MQ=255)
                                        tttaaaTTTTTTAATTTTTTTTAAATATTTTTTTA‑TTATTTAA‑TTTTTTTTTT‑‑T‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                                             <  2:28506/125‑1 (MQ=19)
                                         taaattttttAAATTTTTTTAAAATAATTTTTTT‑TTTATAAT‑TTTTTTTATT‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                                             <  2:2525156/120‑1 (MQ=255)
                                          cAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTATGTTTAATAAAAATTGaaaata                                                                                            >  2:3345526/1‑126 (MQ=255)
                                            aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTAAaaataaa                                                                                          >  1:1935439/1‑128 (MQ=255)
                                                 ttAAATTATTTTTAAAAAATTATTTATTTAATAAA‑TTTATTTTTG‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                                     <  2:3823659/128‑1 (MQ=255)
                                                  ttaaTTTTTTTATAATTATTTTTTA‑TTTATTAA‑TTTTATGTTC‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAAt                                                                                    <  2:3597452/126‑1 (MQ=255)
                                                     attattTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATTAAATTTATTTTATTAAACGTAATTTTATTTTTAAAAAAAATGTAAAAAAAATTTAATTgaa                                                                                >  2:493031/1‑126 (MQ=255)
                                                     attattTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGTTAAttttaaa                                                                              >  1:2166149/1‑123 (MQ=255)
                                                        attTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAAAGTATATTTATTTTTAAAAAAAATGTAAAATAAATTTAATTTTCat                                                                              >  1:54039/1‑128 (MQ=255)
                                                            taaaaTAATTTTATA‑TTAATAAA‑TTTTATTTTT‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAt‑aataa                                                                        <  2:3255811/126‑1 (MQ=255)
                                                            tCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAAAAAAATTTATTTTATTAAACTTATATTTTTTTTTAATAAAAATTTAAAAAAAATTTAATTTtaat‑aataa                                                                        >  1:113062/1‑128 (MQ=255)
                                                             aaaaTAATTTTTTA‑TTATTAAA‑TTTTATGCTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑aataat                                                                       <  2:3303944/127‑1 (MQ=255)
                                                              aaaTCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTAaat‑aataat                                                                       >  1:1888067/1‑128 (MQ=255)
                                                              aaaTCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTAATAAAACTTAAATTTATTTTTAATAAAAATTGAAAAGAAAGTAAATTGTCAT‑AAtaatt                                                                      >  1:180909/1‑128 (MQ=255)
                                                              aaaTAATTATATA‑TTAATAAA‑TTTTATTTTT‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑aataat                                                                       <  2:1311775/128‑1 (MQ=255)
                                                               aaTTATTATTTT‑TTAATTAA‑TTTTTTTTTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AAtaattt                                                                     <  1:3361749/128‑1 (MQ=255)
                                                               aaTCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTT‑TTTTTTAAAAAAAAATATTTTTTTTTATTAAACGTATATTATTTTTTAATAAAAATGTAAAATAATATTAATTTAAAT‑AAtaattaat                                                                   >  1:3818878/1‑125 (MQ=255)
                                                                    ttATCTA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTAAAAAAATAAAATTTATTTTATTAAAAGTATATTTTTTTTTATAAAAAATTAAAAATAAATTTAATTTTAAT‑AAtaatttaatt                                                                 >  1:1603179/1‑128 (MQ=255)
                                                                    ttATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAAT‑AATAATttaatta                                                                >  1:644384/1‑128 (MQ=255)
                                                                      tattttttatttaa‑TTTTATTTTT‑‑T‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATttaattaa                                                               <  2:1577208/116‑1 (MQ=255)
                                                                        cTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTTATTAAACGTAAATTTATGTTTAATAAAAATGTAAAAGAAATTGAATTTTAAT‑ATAAATTTTATTaaaaa                                                            >  2:3507478/1‑126 (MQ=255)
                                                                         tA‑TTAATCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTAAAAAAAAATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAATTTAAAAAAAATTTAATTTTAAT‑AATAATTTTATTAAata                                                            >  1:1692798/1‑128 (MQ=255)
                                                                         tA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTTATTAAACGTTTATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAatat                                                           >  1:3487943/1‑128 (MQ=255)
                                                                               aTCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTTAAAATAAATTTAATTTTCAT‑AATAATTTAATTAAATATATAAc                                                      >  1:3903834/1‑128 (MQ=255)
                                                                               aTCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATAAAATTTATTTTATTAAAAGTATATTTATGTTTAAAAAAAATGTAAAATAAATTGTATTGTAAA‑AATAATTTAATAAAATAAAAAAc                                                      >  2:3762488/1‑128 (MQ=255)
                                                                                tCAA‑TTTTATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTAAAAAAAAATTATTAATTTGAATAAACTTATATTTATGTTTAAAAAAAAATTAAAAAAATATTAATTATCAA‑AAAAATTAATATAAataaaaaaa                                                      >  2:1673371/1‑122 (MQ=255)
                                                                                tCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTTTTTTTTTAAACTTATTTTTTTGTTTAATAAAATTTTAAAATAAATTTAATTTTAAT‑AAAAATTTAATTTAATATATaaaa                                                     >  1:3431747/1‑126 (MQ=255)
                                                                                 cAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAAATTAAAAAAAATTTAATTTTAAT‑AATAATTTTATTAAATATATAaaaa                                                    >  1:2385056/1‑128 (MQ=255)
                                                                                 cAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTATTTAAATATATAAAAAt                                                   >  1:3859945/1‑128 (MQ=255)
                                                                                  aa‑TTTTATGCTC‑‑G‑‑TTTTTTTTTT‑TTTTATAAAAAAAAAAAATTTTTTTTATAAAAATTAAATTAATTTTTAAAAAAAAT‑TAAAAAAAAATTAATTTTAATAAAAAATTTAATAAAATATATAAAAAtt                                                  >  2:545739/1‑127 (MQ=255)
                                                                                       ttATGCTC‑‑GTTTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTa                                                <  2:271205/128‑1 (MQ=255)
                                                                                         ttttttttttttttttttttt‑ttttttATAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAAAGTa                                                <  2:2438130/118‑1 (MQ=255)
                                                                                         ttattttattttttttttttt‑ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTa                                                <  2:3448052/118‑1 (MQ=255)
                                                                                         aTGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTTATTAAACGTAATTTTATTTTTAATAAAAATGGAAAAAAAAGTGAATTGAAAT‑AATATTTTAATTAATTATTAAAAAATTTAAGt                                             >  2:2963519/1‑128 (MQ=255)
                                                                                          tGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTATTTTATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAAGTTAATTTTAAT‑AATAATTTAATTAAATTTTTAAAaatttaattt                                            >  1:2797931/1‑128 (MQ=255)
                                                                                             tgtag‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGttt                                           <  1:3332757/124‑1 (MQ=255)
                                                                                              c‑‑G‑TTTTTTTTTTT‑TTTTTTAAAAAAATATAATTTTTTTTTTTAAAGGTTTTTTTTTTTTTAAAAAAAATGAAAAAAAAATTTAATTTAAAT‑AAAAATTTAATTAAATATTTAAAAATTTAAGTTTaaa                                        >  1:973979/1‑128 (MQ=255)
                                                                                                tttttttttttttt‑ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                         <  2:414770/125‑1 (MQ=255)
                                                                                                 g‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATTTAAAATAAATTGAATTGTCAT‑AATAATTTAATTAAATATATAAAAATGTAAATTTTaaa                                       >  1:3547611/1‑128 (MQ=255)
                                                                                                 ctcgttttttttt‑ttttttAAAAAAATATAATTTATTTTATTAAACGTAATTTTATTTTTAATAAAAATGGAAATGAAAGTGAATTGTCAT‑AATAATTTAATTAAATAATTAACAAATTAATttttta                                        >  1:1222307/5‑126 (MQ=255)
                                                                                                  tttttttttttt‑ttttttAAAAAAATATAATTTTTTTTATTAAACGTTTATTTTTTTTTAATTAAAATTTAAAAAAAATTTATTTTTATT‑AATAATTTATTTAAATATATAAAATTTTAATTTTTaaa                                       >  1:2664678/2‑128 (MQ=255)
                                                                                                    tttttttttt‑ttttttATATAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                                     <  2:305576/128‑1 (MQ=255)
                                                                                                    tttttttttt‑ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAAAAATTGAATTGACAT‑AATAATTTAATTAAATATATAACTATTTAATTTTTAAAac                                     >  1:3749892/1‑128 (MQ=255)
                                                                                                     ttttttttt‑ttttttACATAATTATAATTTATTTGATTTAAATTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                                    <  1:2611619/128‑1 (MQ=255)
                                                                                                      tttttttt‑ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATTGAAAAGAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAAAAATTTAAATTTTAAAaatt                                   >  1:2931303/1‑128 (MQ=255)
                                                                                                       ttttttt‑ttttttACAAAAATATAATTTTTTTGATTAAACGTATATTTTTGTTTAATAAAAATGGAAAAAAAAGTGAATTGTCAT‑‑ATAATTTAATTAAATATATAACATTTTTAGTATGAAAacttac                                 >  2:2599851/1‑128 (MQ=255)
                                                                                                         ttttt‑ttttttACAAAAATATAATTTATTTGATTAAACGGATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact                                <  2:3021856/128‑1 (MQ=255)
                                                                                                          tttt‑ttttttATATAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttactt                               <  2:1043437/128‑1 (MQ=255)
                                                                                                           ttt‑ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                              <  1:3029260/128‑1 (MQ=255)
                                                                                                           ttt‑ttttttAAAAATATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                              <  2:2024490/128‑1 (MQ=255)
                                                                                                            tt‑ttttttATAATAATATAATTTTTTTTATTAAAAGTTTATTTATTTTTTTTTAATATTTATAATTAAGTTAATTGTTAT‑ATTAATTTAATTAAATATATAACATTGTAAGTTTTAAAAATTAAtttt                             <  2:138680/128‑1 (MQ=255)
                                                                                                                  ttttatataaTATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATTGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt                        <  2:740823/120‑1 (MQ=255)
                                                                                                                  tttACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt                        <  1:3962504/128‑1 (MQ=255)
                                                                                                                     aaaataaTATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttttt                     <  2:1123219/123‑1 (MQ=255)
                                                                                                                      cAATAATATAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTttta                    <  2:2112720/128‑1 (MQ=255)
                                                                                                                         aaaTATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                 <  1:1495981/128‑1 (MQ=255)
                                                                                                                          aaTATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattta                >  1:3087228/1‑128 (MQ=255)
                                                                                                                          aaTATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattta                <  2:3947538/128‑1 (MQ=255)
                                                                                                                            tataATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACt              <  2:3401363/128‑1 (MQ=255)
                                                                                                                             ataATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTg             >  1:887500/1‑128 (MQ=255)
                                                                                                                             ataATTTATTTGATTAAAATTATATTTATGTTTAATAATAATTGAAAAGATAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTg             <  1:1303139/128‑1 (MQ=255)
                                                                                                                             ataATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTg             <  2:2226969/128‑1 (MQ=255)
                                                                                                                              ttatttatttGATTAAAAGTATTTTTATGTTTTATAAAAATGGTAAAGAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGt            <  2:1485715/126‑1 (MQ=255)
                                                                                                                               aaTTTTTTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa           <  2:3543944/128‑1 (MQ=255)
                                                                                                                               aaTTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa           <  2:3198304/128‑1 (MQ=255)
                                                                                                                                 tttatttGATTAATAGTTTTTTTATTTTTATTATTAATTGTAAAGAAATTGAATTGTCAT‑TATAATTTAATTAAATATATAACAATGTAAGTTTTAATACTTACTTTTTTGTTTTTATTTACTGTaaa         <  2:1793312/128‑1 (MQ=255)
                                                                                                                                  ttatttGATTTATAGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAAAAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa        <  2:2282660/128‑1 (MQ=255)
                                                                                                                                  ttatttGATTAAATTTATATTTATGTTTAATAATAATTGAAAAGAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa        <  2:644384/128‑1 (MQ=255)
                                                                                                                                  ttatttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa        >  2:2184328/1‑128 (MQ=255)
                                                                                                                                   tatttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAAc       >  2:1720803/1‑128 (MQ=255)
                                                                                                                                    atttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa      >  1:3153793/1‑128 (MQ=255)
                                                                                                                                    atttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa      >  1:3664040/1‑128 (MQ=255)
                                                                                                                                    atttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa      >  2:3150751/1‑128 (MQ=255)
                                                                                                                                     tttGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTCTTTTTATTTACTGTAAAACaa     >  2:86016/1‑128 (MQ=255)
                                                                                                                                     tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa     >  2:9309/1‑128 (MQ=255)
                                                                                                                                     tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa      >  1:731994/1‑127 (MQ=255)
                                                                                                                                      ttGATTATAAGTATTTTTATGTTTAATAATAATTGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAAAAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaa    <  2:1935439/128‑1 (MQ=255)
                                                                                                                                       tGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa   <  1:460880/128‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                
CTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAATCAA‑TTTTATGCTC‑‑G‑TTTTTTTTTTT‑TTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAA  >  CP016816/420141‑420398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑