Predicted mutation
evidence seq id position mutation annotation gene description
RA CP016816 484,795 A→T intergenic (‑104/+67) JCVSYN2_02220 ← / ← JCVSYN2_02225 hypothetical protein/50S ribosomal protein L7/L12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816484,7950AT99.3% 5230.7 / ‑0.1 1746intergenic (‑104/+67)JCVSYN2_02220/JCVSYN2_02225hypothetical protein/50S ribosomal protein L7/L12
Reads supporting (aligned to +/- strand):  ref base A (6/7);  new base T (843/890);  total (849/897)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1808 total aligned reads displayed.

TAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCAGC  >  CP016816/484671‑484918
                                                                                                                             |                                                                                                                            
 aaaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaa                                                                                                                          >  2:2198214/1‑128 (MQ=255)
 aaaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaa                                                                                                                          <  1:3696035/128‑1 (MQ=255)
  aaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaa                                                                                                                         >  1:2504558/1‑128 (MQ=255)
    aaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaagc                                                                                                                       >  2:3160265/1‑126 (MQ=255)
        aGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTATCAACTAAACTACACTCGATTATTTAATTATATTTTTATTTAAT‑ATAAAAAGAAAtt                                                                                                                   >  1:2569512/1‑128 (MQ=255)
        aGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAtt                                                                                                                   >  2:3369361/1‑128 (MQ=255)
           cAAAACTCATAGATTTAATCCTTTTATAGTTGACCATAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                                <  2:3295464/128‑1 (MQ=255)
            aaaaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAATCTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAac                                                                                                               >  2:1923442/1‑128 (MQ=255)
             aaaCTCATAGATTTAATCCTTTTATACTTGACCAAAAAAAAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCCAAAAATTAATTATATTTATTATTAAA‑ATAAAAAGCAATTAAcca                                                                                                              >  1:980816/1‑128 (MQ=255)
              aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAATAAacac                                                                                                             >  2:1044416/1‑128 (MQ=255)
               aCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacaaa                                                                                                            >  2:447139/1‑126 (MQ=255)
               aCTCATAGATTTAATCATTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacaca                                                                                                            <  2:541085/128‑1 (MQ=255)
                cTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacacac                                                                                                           <  2:1611804/128‑1 (MQ=255)
                cTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAAATAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacacac                                                                                                           >  2:1524624/1‑128 (MQ=255)
                 tCATAGATTTAATCCTTTTATTGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                          >  2:2897007/1‑128 (MQ=255)
                 tCATAGATTTAATACTTTTATAGATGACCAAAAAATAAGATAGAGCATAGATGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                          <  2:3418732/128‑1 (MQ=255)
                      gATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTATTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                     >  2:3622090/1‑128 (MQ=255)
                      gATTTAATACTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                     <  2:2046710/128‑1 (MQ=255)
                       aTTTAATCATTTTATAGTTGACCAAAAAATAAGATAGAGCAAAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATATAATTATATTTTTTATTTAATATAAAAAGCAATTAAAAACACAAAAAc                                                                                                     >  1:1903120/1‑128 (MQ=255)
                        tttAATCCTTTTATAGTTGCCCAAAAAATAAGATATAGCATAGCAGAAGCTCATAACAACTAAACTACACTCTAATATTTAATAATATATTTTTTTAAT‑ATAAAACTCAATAAATCACACAAAAACta                                                                                                   >  2:232391/1‑127 (MQ=255)
                        tttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTc                                                                                                   <  1:3219235/128‑1 (MQ=255)
                        tttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTc                                                                                                   >  2:1850427/1‑128 (MQ=255)
                        tttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAAATATATTTATTATTAAT‑ATAAAAAGCAATTAAACACACAAAAACTc                                                                                                   >  1:1358325/1‑128 (MQ=255)
                           aaTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAATAAGCAATTAAACACACAAAAACTCAcc                                                                                                >  2:3941546/1‑128 (MQ=255)
                            aTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccc                                                                                               >  2:1359503/1‑128 (MQ=255)
                            aTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccc                                                                                               >  2:3779244/1‑128 (MQ=255)
                            aTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcca                                                                                               <  1:1696081/128‑2 (MQ=255)
                             tCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccat                                                                                              <  1:2190474/128‑3 (MQ=255)
                             tCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCa                                                                                              >  1:182317/1‑128 (MQ=255)
                               cTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAtt                                                                                            >  2:112364/1‑128 (MQ=255)
                                ttttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataat                                                                                           <  1:3144478/128‑6 (MQ=255)
                                 tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataatg                                                                                          <  1:1281136/128‑7 (MQ=255)
                                 tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑At                                                                                         >  1:690838/1‑128 (MQ=255)
                                 tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑At                                                                                         <  1:244373/128‑1 (MQ=255)
                                 tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑At                                                                                         >  1:2925759/1‑128 (MQ=255)
                                  ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATg                                                                                        >  1:2131152/1‑128 (MQ=255)
                                  ttATAGTCGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataatgg                                                                                         <  2:144890/128‑8 (MQ=255)
                                   tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATgg                                                                                       >  1:3407655/1‑128 (MQ=255)
                                    ataGTTGACCAAAAAATAAGATAGATCATAGCAGAATCTCTTAACAACTAAACTACACTCGATTATTTTATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAACCTCACCCATT‑ATGGt                                                                                      <  1:3965943/128‑1 (MQ=255)
                                    ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATTGt                                                                                      >  1:3466334/1‑128 (MQ=255)
                                       gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAg                                                                                   >  2:943366/1‑128 (MQ=255)
                                       gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAg                                                                                   <  1:1757702/128‑1 (MQ=255)
                                       gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCAATT‑ATGGTGAg                                                                                   >  1:3858515/1‑128 (MQ=255)
                                          gACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCTATTAAACACACAAAAACTCACCCATT‑ATGGGGAGttt                                                                                >  2:1762944/1‑128 (MQ=255)
                                          gACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGttt                                                                                >  2:3842197/1‑128 (MQ=255)
                                           aCCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATTGTGAGTTTa                                                                               >  1:83127/1‑128 (MQ=255)
                                            ccAAAAAATAAGATAGAGCATAGCAGAATCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaa                                                                              <  1:753989/128‑1 (MQ=255)
                                            ccAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACATCTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaa                                                                              <  1:1064912/128‑1 (MQ=255)
                                              aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaaaa                                                                            <  1:2264712/128‑1 (MQ=255)
                                              aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaaaa                                                                            >  2:678054/1‑128 (MQ=255)
                                               aaaaaTTAGATAGAGCATAGCAGAAGCTCTTAACAAATAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaaaaa                                                                           <  2:1184848/128‑1 (MQ=255)
                                               aaaaaTAAGATAGAGCATATCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTaaaaa                                                                           <  1:2843708/128‑1 (MQ=255)
                                                     aaGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATAATTc                                                                     >  1:100120/1‑128 (MQ=255)
                                                      aGATAGAGCTTAGCAGAAGCTCTTAACAACTAAACTACTCTCGATTATTTAATTAAATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGTTGAGTTTAATAATTATTCa                                                                    >  2:199617/1‑128 (MQ=255)
                                                      aGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCa                                                                    >  1:3563120/1‑128 (MQ=255)
                                                      aGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCa                                                                    <  1:1985761/128‑1 (MQ=255)
                                                           gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTTTTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAAATATTCAAAAAt                                                               >  2:2770314/1‑128 (MQ=255)
                                                           gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAAt                                                               <  2:3483139/128‑1 (MQ=255)
                                                           gagCATAGCAGAAGCTCTTAAAAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAAt                                                               <  2:301211/128‑1 (MQ=255)
                                                           gagCATAGAATAAGCTCTTAACATCTAAACTACAATCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAAt                                                               <  1:1448000/128‑1 (MQ=255)
                                                            agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAAT‑ATGGTGAGTTTAAAAATTATTCAAAAAtt                                                              >  1:463525/1‑128 (MQ=255)
                                                             gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAAtgt                                                             >  1:2996363/1‑126 (MQ=255)
                                                             gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTAAAT‑ATAAAAAGCAATAAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATAATTCAAAAAttt                                                             >  1:621352/1‑128 (MQ=255)
                                                              cATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTg                                                            >  2:3080712/1‑128 (MQ=255)
                                                                tAGCATAAGCTCTTAACAACTAAACTACAATCGATTATTTAATTATATTATTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACAAATT‑ATGTTAATATTAAAAATAATTCAAAAAttttaa                                                          >  1:2644146/1‑125 (MQ=255)
                                                                 atcAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGatt                                                         <  1:3513341/126‑1 (MQ=255)
                                                                 aGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGa                                                                                    <  2:2286706/101‑1 (MQ=255)
                                                                  gCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGatta                                                        <  1:904806/128‑1 (MQ=255)
                                                                    aGAAGCTCTTAACTACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGattatt                                                      <  2:369698/128‑1 (MQ=255)
                                                                     gAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCTCCCATT‑AAGGATAGTTTAAAAATTATTCAAAAAATAGATTAttt                                                     >  1:1544455/1‑128 (MQ=255)
                                                                     gAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGatttaaa                                                     <  2:60147/128‑5 (MQ=255)
                                                                      aaGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTAtttt                                                    >  2:731160/1‑128 (MQ=255)
                                                                        gCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaa                                                  <  2:782753/128‑1 (MQ=255)
                                                                         ctctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaaa                                                 <  1:533036/128‑1 (MQ=255)
                                                                          tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAAt                                                >  2:2705452/1‑128 (MQ=255)
                                                                            ttAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCa                                              <  1:3362485/128‑1 (MQ=255)
                                                                            ttAACAACTAAACTACACTAGATTATTTAATTATATTTTTTATTTAATATAAAAAGCAATTAAACACACAAAAACTCACCCATTGATGG‑GAGTTGAAAAATTAATCATAACTTTGATTATGTTACATc                                               >  2:2483316/1‑128 (MQ=255)
                                                                                 aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                          <  2:2561944/111‑1 (MQ=255)
                                                                                 aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                         >  1:3275870/1‑128 (MQ=255)
                                                                                 aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                         <  1:2318613/128‑1 (MQ=255)
                                                                                 aactaaactaCACTCGAATATTTAATTATATTTTTTTTTAAT‑AAAAAAACCAATTAAACACACAAAAACTCACCCATA‑ATGTTGAGTTTAAAAATAATTCAAAAATTTCATAATATTAAATAAATTGa                                         >  2:3541281/1‑128 (MQ=255)
                                                                                     aaactaCACTCGATTAATTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCt                                     <  1:2705777/128‑1 (MQ=255)
                                                                                       actaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATCCAAAAATTTGATTATTTTAAATCAGTTGAAGCtgg                                   <  2:1269351/128‑3 (MQ=255)
                                                                                          acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTTATTATTTTAAATCAATTTAAGCTCCAga                                >  2:2134029/1‑127 (MQ=255)
                                                                                          acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                                >  2:2408706/1‑128 (MQ=255)
                                                                                          acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                                <  1:1123147/128‑1 (MQ=255)
                                                                                          acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACAAACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                                <  1:3632175/128‑1 (MQ=255)
                                                                                               ctattattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCAATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCaa                           <  2:2645747/126‑1 (MQ=255)
                                                                                               cGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGATCCAGCTTCaa                           >  2:1673547/1‑128 (MQ=255)
                                                                                                 attattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACt                         <  2:850339/128‑1 (MQ=255)
                                                                                                  ttattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTa                        >  2:3241004/1‑128 (MQ=255)
                                                                                                    ctttAATTATATTTTTTTTTATT‑ATATTAAGCATTTAAAGACACAAAAAGTCACCCATT‑ATGGTGAGTTTAAAATTTATTCTATAATTTGTTTTTTTTATATCAATTGAAGCTCCAGCTTCAACTAAt                      <  1:206483/127‑1 (MQ=255)
                                                                                                    attTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAt                      <  1:2388113/128‑1 (MQ=255)
                                                                                                        aaTTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTa                   <  1:2785048/128‑1 (MQ=255)
                                                                                                        aaTTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAg                  <  1:1633171/128‑1 (MQ=255)
                                                                                                         ataatatTTTTTTTTAAT‑ATAAAAAGAAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGc                 <  2:2833130/125‑1 (MQ=255)
                                                                                                            atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt              >  1:1206238/1‑128 (MQ=255)
                                                                                                            atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt              >  2:2970854/1‑128 (MQ=255)
                                                                                                                 tttttttaAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt         <  1:3781648/128‑1 (MQ=255)
                                                                                                                   tttttaAT‑ATAAAAATCAATTAAACAAACAAAAACTCAACCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTACAGCTTCAACTAATTTAGCTTTCATttct       <  1:3044396/128‑1 (MQ=255)
                                                                                                                             |                                                                                                                            
TAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATT‑ATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCAGC  >  CP016816/484671‑484918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑