BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,157	2 bp→TT	intergenic (‑440/+402)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,157	0	A	T	99.2%	4026.2 / NA	1309	intergenic (‑440/+403)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (6/4); new base T (673/624); total (679/630)
Fisher's exact test for biased strand distribution p-value = 7.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,158	0	A	T	98.6%	3871.0 / NA	1309	intergenic (‑441/+402)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (3/16); new base T (674/614); total (679/630)
Fisher's exact test for biased strand distribution p-value = 1.84e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1381 total aligned reads displayed.

TTAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420034‑420285

||

  aaattCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaattt                                                                                                                               >  2:268517/1‑127 (MQ=255)

    attcattcATACTTTTAGTCTCATTAATCTAAGTTTCTAAAATTATTTTATGATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaatttta                                                                                                                             <  1:2220562/128‑4 (MQ=255)

    attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaatttta                                                                                                                             >  2:3223416/1‑125 (MQ=255)

    attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaatttta                                                                                                                             <  2:433310/128‑4 (MQ=255)

    attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaatttta                                                                                                                             >  1:3801220/1‑125 (MQ=255)

      tcattcctAATTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaattttaat                                                                                                                           <  2:1476337/128‑6 (MQ=255)

      tcattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑Tttttaattttaat                                                                                                                           <  1:1005802/128‑6 (MQ=255)

       cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTATAAAACTACTAGCACTTATATAAAAAA‑TTTAAAATTTTAATa                                                                                                                          >  2:2621901/1‑128 (MQ=255)

       cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATa                                                                                                                          <  2:1884498/128‑1 (MQ=255)

        attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTtaataa                                                                                                                         >  2:3004345/1‑128 (MQ=255)

        attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTtaataa                                                                                                                         >  1:2019182/1‑128 (MQ=255)

         ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAc                                                                                                                        >  2:856220/1‑128 (MQ=255)

          tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACt                                                                                                                       >  2:583115/1‑128 (MQ=255)

          tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACt                                                                                                                       <  2:2862620/128‑1 (MQ=255)

             tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGaa                                                                                                                    <  1:1381952/128‑1 (MQ=255)

              aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAat                                                                                                                   <  1:287054/128‑1 (MQ=255)

              aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAat                                                                                                                   >  2:2016785/1‑128 (MQ=255)

              aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAat                                                                                                                   <  1:3495915/128‑1 (MQ=255)

                 tttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAattat                                                                                                                <  1:2338074/128‑1 (MQ=255)

                 tttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAattat                                                                                                                <  1:1561431/128‑1 (MQ=255)

                 tttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAattat                                                                                                                <  1:1322407/128‑1 (MQ=255)

                  ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAattatt                                                                                                               >  1:3757899/1‑128 (MQ=255)

                  ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAattatt                                                                                                               <  2:3466889/128‑1 (MQ=255)

                   tAGTCTCATAAATCTAATTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTAttt                                                                                                              <  1:406502/128‑1 (MQ=255)

                      tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                           >  2:3685904/1‑128 (MQ=255)

                       ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCa                                                                                                          <  1:3333052/128‑1 (MQ=255)

                          aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                       >  2:226065/1‑128 (MQ=255)

                             aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                    <  2:180074/128‑1 (MQ=255)

                                 tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                <  1:1294997/128‑1 (MQ=255)

                                    gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAACTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                             >  2:1177304/1‑128 (MQ=255)

                                      ttCTAAAATTATTTTATCAATTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                           <  2:2765482/128‑1 (MQ=255)

                                       tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTCAATTATTTTTCAAATTGTTAAATTAttt                                                                                          >  1:886858/1‑128 (MQ=255)

                                        cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                         >  2:3827403/1‑128 (MQ=255)

                                        cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTATTCAAATTTATAAAATAtttt                                                                                         >  1:3537940/1‑128 (MQ=255)

                                          aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                       <  1:696923/128‑1 (MQ=255)

                                           aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTTAAATTGTTAAATTATTTTc                                                                                        >  2:1969219/1‑126 (MQ=255)

                                            aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTaaaa                                                                                     >  1:2519080/1‑128 (MQ=255)

                                            aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                     <  2:2465802/128‑1 (MQ=255)

                                             attattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                    <  1:1799137/128‑1 (MQ=255)

                                                attTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAt                                                                                 >  2:220225/1‑128 (MQ=255)

                                                   ttatactttAAATAAATAATACTTTTATTAGATGATAAATTAGAACACTTCTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                              <  2:779845/122‑1 (MQ=255)

                                                   ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                              <  2:393224/128‑1 (MQ=255)

                                                    tATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                             <  1:263184/128‑1 (MQ=255)

                                                     aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                            <  1:973100/128‑1 (MQ=255)

                                                     aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                            >  2:2958708/1‑128 (MQ=255)

                                                     aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                            <  1:2939357/128‑1 (MQ=255)

                                                      tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                           >  2:3299648/1‑128 (MQ=255)

                                                      tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                           <  1:2574161/128‑1 (MQ=255)

                                                       cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAt                                                                          >  2:3620152/1‑128 (MQ=255)

                                                        aTTTAAAAAAATAATACTTTTATTAGTTGATATATTTGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTATTTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                         >  1:1877522/1‑128 (MQ=255)

                                                        aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                         <  2:1578689/128‑1 (MQ=255)

                                                        aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                         <  2:2342784/128‑1 (MQ=255)

                                                         tatAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTATTTTAAAAAA‑TTTTTAATTTTAATAACTGAATAATTTTTCAAATTGTTAAAATATTTTCAAATCATTATCAATTa                                                                        >  2:70602/3‑128 (MQ=255)

                                                           tAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCAATTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAAt                                                                      <  1:1626505/128‑1 (MQ=255)

                                                            aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTATTTTAAAAAT‑ATTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAAATATTAATc                                                                     >  1:328689/1‑128 (MQ=255)

                                                                aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCaaat                                                                 >  2:3387042/1‑126 (MQ=255)

                                                                aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtt                                                                 <  1:3003522/128‑1 (MQ=255)

                                                                  ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                               >  2:958051/1‑128 (MQ=255)

                                                                     ataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAATTTCAAATCATTATCTATTAATCAATTTTATg                                                            >  1:2716533/1‑128 (MQ=255)

                                                                      taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGc                                                           >  1:3151855/1‑128 (MQ=255)

                                                                           ttattaTTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCAATTAATCAATTTTATGCTCG‑‑tt                                                    <  1:3677282/128‑1 (MQ=255)

                                                                           ttattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tt                                                    >  1:545498/1‑128 (MQ=255)

                                                                            tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTCTCt‑‑ttt                                                   >  1:3858720/1‑128 (MQ=255)

                                                                            tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑ttt                                                   >  2:1103475/1‑128 (MQ=255)

                                                                            tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑ttt                                                   >  1:3098036/1‑128 (MQ=255)

                                                                                aGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttt‑t                                              >  2:3550070/1‑128 (MQ=255)

                                                                                  tttatatatTACAAAACAAATAACAATTTTTTAAAAAA‑TTTTTTATTTTTATAAATTAATTATTTTTCAAATTTTTAAATTATTTTAAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttt‑ttt                                            <  1:757184/125‑1 (MQ=255)

                                                                                  ttGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttt‑ttt                                            >  2:3767370/1‑128 (MQ=255)

                                                                                   tGATATATTAGAAAACTACAAGCAATTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATATTTTTTCAAATTGTTAAATTATTTTCAAATCAATATCTATTAATCAATTTTATGCCCG‑‑tttttt‑tttt                                           <  1:2113990/128‑1 (MQ=255)

                                                                                    gATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tatttt‑ttttt                                          >  1:1692932/1‑128 (MQ=255)

                                                                                        tattatAAAAATAATATAAATTTTTTAAAAAA‑ATTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATCAAATTTATGCTCG‑‑tttttt‑ttttttttt                                      <  1:615618/128‑1 (MQ=255)

                                                                                          ttttaaaaCTTCTAGCAATTTTTTAAAAAA‑TTTTTAATTTTAATAAAATAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATATATAAATCAAATTTATGCTCG‑‑tttttt‑ttttttttttt                                    <  1:3918356/124‑1 (MQ=255)

                                                                                          tttgAAAAATACTATGACTTTTTTAAAAAA‑TTTTTATTTTTAATAATTGTATTATTTTTCAAATTGTTTAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttt‑ttttttttttt                                    <  1:3432696/125‑1 (MQ=255)

                                                                                          ttAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttt‑tttttttttta                                    >  2:1679568/1‑127 (MQ=255)

                                                                                            ataaaaATAATATCAATTTTTTAAAAAATTTTTAAATTTAAA‑AAATTAAATATTTTTCAAATTTTTAAATTTTTTTCAAATCAATATCTATTAATAAATTTTATTCTCG‑‑tttttt‑ttttttttttaca                                  <  2:1314986/126‑4 (MQ=255)

                                                                                             gAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTaaa                                 >  2:3090981/1‑126 (MQ=255)

                                                                                               aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCT‑‑TTTTTT‑TTTTTTTTTTTAaaaa                               >  1:2438447/1‑128 (MQ=255)

                                                                                               aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACaaa                               >  2:2093606/1‑128 (MQ=255)

                                                                                                aaaaactaTCACTTTTTTTAAAAA‑TTTTTAATTTTAAAAACTTAATTATTTTTCAAATTTTTAAATTATTTTCAAATCATAATCTATTAATCAATTTTTTTCTCGT‑TTTTTT‑TTTTTTTTTTTACaaa                               <  2:1376086/124‑1 (MQ=255)

                                                                                                  ctactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑‑‑TTTT‑TTTTTTTTTTTACAAAAatat                          >  1:2186092/1‑128 (MQ=255)

                                                                                                  atagaagtaattttttAAAAAA‑TTTATATTTTTAAAAAATGAATTATTTTTAAAATTTTTAAAATATTTTAAAATAATTATATATTAATCAATTTTATTCTCGT‑TTTTTT‑TTTTTTTTTTTACaaaaa                             <  1:807074/118‑1 (MQ=255)

                                                                                                   tactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TATTTT‑ATATTTTTTTAAAAAAAata                           >  1:1745895/1‑128 (MQ=255)

                                                                                                    tatatgaattttttAAAAAA‑TTTTTAATTTTAATAAATGAATTTATTTTAAAATTTTTAAATTATTTTCAAATTATTATATATTAATAAATTTTATGCTCGT‑TTTTTT‑TTTTTTTTTTTACAAAAata                           <  1:3062050/120‑1 (MQ=255)

                                                                                                     attgCAATTTTTTAAAAAA‑TTTTTAATTTTATTAAATTAATTATTTTTCAAAATGTTAAATTATTTTAAAATCATTATATATTAATAAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAAtata                         <  1:3620152/125‑1 (MQ=255)

                                                                                                      tttcaatattttAATAAA‑TTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATCTATTAATAAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATaa                        <  1:3238510/120‑1 (MQ=255)

                                                                                                      tataaattttttAAATAA‑TTTTTAATTTTAATAAATTAATTATTTTTCAATTTGTTAAATTATTTTTAAATCATTAACAATTTATCAATTTTTTG‑TTG‑‑GTTTTT‑TTTTTTTTTTTACAAAAATATAat                       <  2:1264437/122‑1 (MQ=255)

                                                                                                      tactaaatttttCAAATA‑TTTTTAATTTTAAAAACTGAAATATATTTCAAATTGTTAAATTATTTTAAAATACTTATTTATTTATCAATTTTTTGCTCGT‑TTTTTT‑TTTTTTTTTTTACAAAAAtata                         <  1:1468836/121‑1 (MQ=255)

                                                                                                      taGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTATTTTTTTTTTTAAAAAAAaata                         >  1:1072821/1‑128 (MQ=255)

                                                                                                        gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTATAG‑‑TTTTTT‑TTTTTTTTTTTAAAAAAATATAatt                      >  1:1220730/1‑128 (MQ=255)

                                                                                                        gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTAAAAAAATATAatt                      >  1:472851/1‑128 (MQ=255)

                                                                                                        gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑‑‑‑TTT‑TTTTTTTTTTTACAAAAATATAatttat                   >  1:2776056/1‑128 (MQ=255)

                                                                                                         cACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCGTTTTTTTT‑TTTTTTTTTTTAAAAAAATATAat                       >  1:1144895/1‑128 (MQ=255)

                                                                                                            ttttttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTAAAAAAAAATaaaattat                  >  2:1025285/1‑122 (MQ=255)

                                                                                                              ttttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTAAAAAAATTTTATTTTTTTg                >  2:2570153/1‑128 (MQ=255)

                                                                                                               tttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCGT‑TTTTTT‑TTTTTTTTTTTAAAAAAAAATAatttttttt                >  2:3155954/1‑127 (MQ=255)

                                                                                                               tttAAAAAA‑TTTTTAAATTTAATAACTGAATTAATTTTCAAATATTTTAATTATTTTCAAATCATTATATATTAATCAAATTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATAATTTATTTGa               <  2:488418/128‑1 (MQ=255)

                                                                                                                 tAAAAAA‑TTTTTATTTTTAATAAATTATTTATTTTTAAATTTGTTAAATTATTTTAAAATAATTTACTATTAATAAATTTTATTCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATAATTTATTTGAtt             <  1:1980955/128‑1 (MQ=255)

                                                                                                                   aaaat‑TTTTAATTTTAAATAA‑TTTATTATTTTTTAAATTTTTTAATTTTTTTAAATTTATTTTTTTTTTATAAATTTTTTTTTTG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATAATTTATTTGATTaaa          <  2:1750305/128‑1 (MQ=255)

                                                                                                                   aaaaa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAATTATAATTTATttaattaa           >  2:3869776/1‑128 (MQ=255)

                                                                                                                      aa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑‑TTTTT‑TTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAActt       >  1:2266307/1‑126 (MQ=255)

||

TTAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTT‑TTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420034‑420285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`