New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486124 (0.080)268 (0.170) 69/252 26.8 66.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 148 (0.100)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 358 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617
                                                                                                                             |                                                                                                                                  
  taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑‑ttaaa‑aatt‑aaaaa                                                                                                                        >  1:3296761/1‑128 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑taaa‑aaat‑aaaaa‑a                                                                                                                      >  1:2732304/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑ACAATTAAA‑AAAT‑aaaaa‑aaa                                                                                                                    >  2:2885713/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAAC‑‑TTAAA‑AAAT‑aaaaa‑aaa                                                                                                                    >  2:2602427/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaa                                                                                                                    >  1:2787862/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑AAAT‑taaaa‑aaaaaaaa                                                                                                               >  2:822019/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaa                                                                                                                >  1:2483325/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATACC‑‑AATAAA‑AATT‑aaaaa‑aaaaaaaa                                                                                                               >  1:903937/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑AAAT‑aaaaa‑aaaaaaaaa                                                                                                              >  1:1054519/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑AAAT‑aaaaa‑aaaaaaaaa                                                                                                              >  1:1179594/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATATTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAAAAAACAAC‑‑TAAAA‑AAAT‑aaaaa‑aaaaaaaaa                                                                                                              >  1:1752800/1‑128 (MQ=255)
            taGGTTAATTAAAAATCAATAAAATTTAATAA‑TCT‑TATAAACTACAACCC‑CGTTATCTATTTTTTTATTTTTTTATCTTAAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AA‑AATT‑aaaaa‑aaaaaaaaaa                                                                                                             <  2:1855355/127‑1 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CTTGATCTATTTTTTTATTTATTTATCATCAAAAAT‑AAAAAAAAAAAAAAAAAATT‑‑‑AA‑AAAT‑aaaaa‑aaaaaaaaaaa                                                                                                            >  1:1639473/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaa                                                                                                             >  2:2800029/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAATCACATaaaaa‑aaaa‑aaaaa‑aaaaaaaa                                                                                                               >  1:1889445/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTAATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑AAAAA‑AAAT‑aaaaa‑aaaaaaaaaaa                                                                                                            >  1:1432768/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaa                                                                                                            >  2:2727340/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑AA‑AAAT‑aaaaa‑aaaaaaaaaaaaa                                                                                                          >  1:751593/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaa                                                                                                           >  2:2684617/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAAT‑aaaaa‑aaaaaaaaaaaaa                                                                                                          >  1:3021972/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATACT‑CTTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAA‑AAAT‑taaaa‑aaaaaaaaaaaaa                                                                                                          >  2:2707208/1‑128 (MQ=255)
              ggTTAATTAAAATAACAA‑AAAATTAAAAATTTT‑TATAAAGTATATCCT‑CGGTATATATTTTTTTATTTGTTTAATTTAACAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaa                                                                                                          <  1:2842369/128‑1 (MQ=255)
               tttaaataaAAAAAAAT‑AAAATTAAAAATTTT‑TAAAATTTATATACT‑CTTTTTATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaa                                                                                                          <  2:2758206/127‑1 (MQ=255)
               gTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑AAAT‑taaaa‑aaaaaaaaaaaaaa                                                                                                         >  1:3222302/1‑128 (MQ=255)
                ttaattaaAAAAACAT‑AAAATTAAAAATTCTATAAAAT‑TATAAAAT‑CCTTATCTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaaa                                                                                                         <  2:381143/128‑1 (MQ=255)
                  aattaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACATTAAAAA‑Taaa‑aaaaa‑aaaaaaaaaaaaaa                                                                                                         >  1:2681280/1‑128 (MQ=255)
                  aattaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAA‑AAAATCAACTTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaaaa                                                                                                        >  2:2572127/1‑128 (MQ=255)
                   attaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CTTTATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAT‑‑CAAATAAAA‑AAAT‑aaaaa‑aaaaaaaaaaaaaaaaa                                                                                                      >  2:178224/1‑127 (MQ=255)
                    ttaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TAAAA‑AAAT‑aaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                     >  1:709381/1‑126 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:1746793/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:2636871/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAA‑AAAT‑aaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:673658/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑CCAAATAAA‑AATT‑aaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:803762/1‑124 (MQ=255)
                        aaTACTAT‑AAAATTAAAAATTAT‑TATAATGTATATACT‑CGTGATTTATTTTTTTTTTTGTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAA‑AAAAAAAAAAAAAAAACTAAaaac                                                                                               <  1:2536382/128‑1 (MQ=255)
                        aaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:393669/1‑128 (MQ=255)
                        aaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:3163808/1‑128 (MQ=255)
                         aaaaacaaaaaCTTAATAAATAT‑TAAAATTTACAACCA‑CGTTATCAATTTTTTTAATTTTTTAACATAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTaaaa                                                                                                 <  2:3058508/120‑1 (MQ=255)
                          aacaaT‑AAACTTAATAATTAT‑TAAAATTTATATACT‑ATTTTATTAATTTTTTATTTTTTTAAATAAAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  2:227749/124‑1 (MQ=255)
                             cAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑AGAGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACATTAACC‑‑ATAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAAATAAataaaaa                                                                                            >  1:2935996/1‑128 (MQ=255)
                             cAT‑AAAATTAATAATATT‑TATAATTTTTATCATACGT‑ATTTTTTTTTTTATTTTTTTTAATATAAAAAT‑TAAAAAAAAAAAAACCCCATAAAAA‑TTTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  2:2149530/128‑1 (MQ=255)
                                 aaaataaataaataT‑TATAATATAGATCAT‑TGTATACTAATTTTTTAATTTTTTATCAAAAAAAAA‑AAAAAAAAAAAAATACCCAT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  2:1096664/122‑1 (MQ=255)
                                 aaaCTTAATAATTAT‑TATAATTTATATAAT‑ATTTATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:442340/128‑1 (MQ=255)
                                  aaattAAAAATTTT‑TATAATTTATATACT‑CGTTATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:687772/125‑1 (MQ=255)
                                   aaataataaTTAT‑TATAATTTTTAAACT‑CGGTTTATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:2498580/125‑1 (MQ=255)
                                    ataaataatTAT‑TAAAATTTACATACA‑CTTTATAAATATTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑TAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                    <  2:520378/125‑1 (MQ=255)
                                     ttAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑TTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAAATAAaaacaaaataattt                                                                                     >  1:2892987/1‑121 (MQ=255)
                                        ataatTTT‑TATAATTTATATCCT‑TTTTATATTTTTTTTTATTTTTTTATATTTA‑AAAA‑AAAAAAAAAAAAAAACCCATTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                   <  1:2707208/128‑1 (MQ=255)
                                         taatTAT‑TATAATTTATAAACA‑CGTTATCTATTTTTTTATTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑‑AAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  2:3285272/128‑1 (MQ=255)
                                          aaattt‑tATAAATTACATCCT‑CGTTATATATTTTTTTATTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  2:3140574/123‑1 (MQ=255)
                                                    aatttttataat‑CGTGTTATATTTTTTTTATTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑AAAT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                       <  2:3250725/117‑1 (MQ=255)
                                                     atgttttttat‑CGTTATTTTTTTTTTTTTTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAA‑AATT‑AAAAA‑AAAAAAAAAAAGAAAACTAAAAACAAACTCTATTTCTTAAAATTACCta                                                                      <  1:281244/118‑1 (MQ=255)
                                                        gttgagactagTGATTTATTTTTTTATTTGTTTAAATTCAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                   <  1:2554027/118‑1 (MQ=255)
                                                           aatacaagTGATCATTTTTTTTTTTTTTTTAAAATCAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑‑AAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                <  2:1735968/121‑1 (MQ=255)
                                                            atcaactttttttatttttttattttttTATCTTCAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                 <  2:3169814/116‑1 (MQ=255)
                                                             atcttgttttatatttttttattttttTAAATTAACAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                <  2:1917808/117‑1 (MQ=255)
                                                             acctgtttaattattttatttTTTTTTTTAATTAAAAAAA‑AAAAAAAAAAAAATCCAATT‑‑‑AA‑AATT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:1991824/117‑1 (MQ=255)
                                                              tatatttatttatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCCTTT‑‑AA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:2483325/118‑1 (MQ=255)
                                                              cT‑CGTGATC‑ATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAAAAACCCTTTAA‑AAAT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:1828462/128‑1 (MQ=255)
                                                              attcttttttttttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:3073524/116‑1 (MQ=255)
                                                              actatttttatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:468790/118‑1 (MQ=255)
                                                                 agtttaatATTTTTTTATATTTTTAAAATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  2:940885/121‑1 (MQ=255)
                                                                  ttttttaatttttttatttttttATTTTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  1:2041781/121‑1 (MQ=255)
                                                                  cttaTCTATTTTTTTATTTGTTTATAATAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:236151/125‑1 (MQ=255)
                                                                   ttttatatttttttattttttTATATTAACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:189948/123‑1 (MQ=255)
                                                                      tCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAAT‑‑TAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:2431015/128‑1 (MQ=255)
                                                                        ttttttttttttttttTAATATAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TTAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:1121472/126‑1 (MQ=255)
                                                                         ttttttttATTT‑TTTATATTTAAAAAT‑AAAAAAAAAAAAATACCCTTT‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  2:1471266/127‑1 (MQ=255)
                                                                         aTTTTTTTATTTGTTTATTTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:2880068/128‑1 (MQ=255)
                                                                          tttttttatttttttaATTTAAAAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑AAAT‑TAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                 <  2:1267767/128‑1 (MQ=255)
                                                                           ttttttATTTTTTTAATATAAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATAAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                 <  2:1302584/128‑1 (MQ=255)
                                                                            tttttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAATAAAAAAAAAACATAAAAACAAAAAATATTTATTAAAAATACATATAATACAACatttttattaata                                                >  1:399265/1‑120 (MQ=255)
                                                                             ttttttttGTTTATCTTAAAAAAT‑AAAAAAAAAAAAAAACCCTTAAAAATTAAA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  2:1180043/128‑1 (MQ=255)
                                                                              tttATTTTTTTTTTTTAAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                               <  1:309779/128‑1 (MQ=255)
                                                                              tttATTTTTTTATTATAAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑TTAA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  2:2328571/128‑1 (MQ=255)
                                                                              tttATTTTTTTAACTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑‑‑TA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                          <  2:3025043/128‑1 (MQ=255)
                                                                               tttttttttTATCATAACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                             <  2:2978128/125‑1 (MQ=255)
                                                                               ttATTTTTTTATATAAAAAAAT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                             <  2:962848/128‑1 (MQ=255)
                                                                                 tttttttTATTTTAAAAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAA‑AATT‑ATAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                           <  2:2033534/127‑1 (MQ=255)
                                                                                    tttatATCTTCAAAAAT‑AAAAAAAAAAAAAACTCC‑‑ATAAA‑AATT‑TAAAA‑AAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                                        <  2:579669/124‑1 (MQ=255)
                                                                                      ttttttataaaaaaa‑aaaaaaaaaaaaaaATCAATTT‑AA‑AAAT‑AAAAA‑AAAAAAAAAAAAAAAACTATAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                       <  2:1669370/117‑1 (MQ=255)
                                                                                       ttatataaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  2:1443208/118‑1 (MQ=255)
                                                                                       ttATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAAATAAAAA‑AAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                                     >  2:2935366/1‑128 (MQ=255)
                                                                                         attttaacaAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  2:2196048/122‑1 (MQ=255)
                                                                                           attaaaaaaa‑aaaaaaaaaaaaaaCACCTTT‑‑AA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  2:67031/122‑1 (MQ=255)
                                                                                                  aaT‑AAAAAAAAAAAAATACAC‑‑TTAAA‑AATA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                          <  2:1463268/128‑1 (MQ=255)
                                                                                                    t‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAA‑AACAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  2:1399136/128‑1 (MQ=255)
                                                                                                        aaaaaaaaaaATCCCC‑TTAAAA‑ATTA‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                      <  2:344983/128‑1 (MQ=255)
                                                                                                         aaaaaaaCAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAACAAAAAACAAACAAAATTTAAAAAAATAACATTTTAAAAAAATTTTAATTTTTAAATAAAAATATTTATATAatatataaata                    >  1:2181414/1‑124 (MQ=255)
                                                                                                             aaaCAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAAAAAAAAAAAAAA‑AAAAAACAAACACAATTAATTAAAATTCCATATTATACCACATTTTATTTTTAAAAAAAAAAATTGACAAAATtaatatataatata               >  2:3185941/1‑128 (MQ=255)
                                                                                                                cAATCCCC‑‑TTAAA‑AATT‑AAAAA‑AAAGAAAAAAAAAAAAATAAAAACAAACGCTATTTATTAAATTTCCCTATTATACACCATTTTATTTTTAAAATAAGATATTGACATAATAAATATataataaaaa             >  2:2843542/1‑124 (MQ=255)
                                                                                                                 aacaatacacataa‑aaat‑taaaa‑aAAAAAAAATAATATACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  2:875785/116‑1 (MQ=255)
                                                                                                                 aaaatacccttaaa‑aattaaaaaA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata               <  2:715689/119‑1 (MQ=255)
                                                                                                                   aatccccttaaa‑aattaaaaaA‑AAAAAAAAAAAAAAAAATAAAAACAAACAATATTAATTAAATTTACAAATTAAAAACAAATTTATTTTTAAAATAAAATTTTAAAAAAATATAAATAAAatattta             >  1:3323772/8‑128 (MQ=255)
                                                                                                                   aatacaattaaa‑aattaaaaaA‑AAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata             <  2:777495/121‑1 (MQ=255)
                                                                                                                   aaactaattAAA‑AATT‑TAAAA‑AAAAAAAAAAATAAAACTAAAAACAAACTCTATTTATTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:1716292/121‑1 (MQ=255)
                                                                                                                    tatacaataaa‑aatt‑aaaat‑aAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata           <  2:599851/121‑1 (MQ=255)
                                                                                                                    aaatacattaa‑aaat‑aaaaatAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  2:1646350/119‑1 (MQ=255)
                                                                                                                        ccataaa‑aatt‑aaaaa‑aAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:2598708/125‑1 (MQ=255)
                                                                                                                        aattaaa‑aatt‑aaaaa‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCTCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  2:1580484/126‑1 (MQ=255)
                                                                                                                           ttaa‑aaat‑taaaa‑aAAAAAAAAAAAAAAAAAAAAAACAAAAACTATTTCTTAAAATTCCCAATTATACCACATTTTATTTTTAAAAAAATAAATTGACATAATTTATATCTAATataaataaaaaata    >  1:2952286/3‑122 (MQ=255)
                                                                                                                             |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAA‑AAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.