BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 203895	391 (0.290)	214 (0.140) +TTT	65/214	24.1	32.7%	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
*	?	CP016816	203896 =	453 (0.290)	214 (0.140) +TTT	65/214	24.1	32.7%	intergenic (+280/+178)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 713 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

ttgaTTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t                                                                                                                                           >  1:3242819/4‑128 (MQ=255)

ttAATTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGATTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t                                                                                                                                           >  2:910680/1‑128 (MQ=255)

 tAATTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑t                                                                                                                                         >  1:2719873/1‑128 (MQ=255)

 tAATTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑t                                                                                                                                         >  2:652285/1‑128 (MQ=255)

    ttttttttAT‑AAAAAAAAT‑TAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑t                                                                                                                                   >  2:1766827/1‑128 (MQ=255)

    atttttaaATAAAAAAAAA‑‑AAAAATTTTTCATTTAAATCCATTTTTAAAAAAGC‑CTATGTTCTTGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTT‑TTTTTTT‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑t                                                                                                                                   <  1:3271150/127‑1 (MQ=255)

      ttttttATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑tt                                                                                                                                  >  2:3145158/1‑128 (MQ=255)

       tttttATAAAAAAAAATAAAAAATTTTAAATTTAAAGCAATTTTAAAAAAAGC‑CTATGTAATTGGATTTTAATT‑TAATTAAAAAAATTAAAAACGATTAAAAATTATA‑‑TTTTTA‑TGC‑‑Tt‑t‑‑‑‑t‑tttt‑‑ttt                                                                                                                                 >  1:1566267/1‑128 (MQ=255)

        ttttAAAAAAAAAAAT‑AAAAATTTTTAATTTAAATCCATTTTTAAAAAATC‑CTTTTTTCTAGGCTTTTTATTAAAATTTTAAAAATT‑AAAACGCTTTCAAATTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑tttt                                                                                                                                <  1:542141/128‑1 (MQ=255)

             taAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAAAATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GTC‑‑TT‑G‑‑‑‑t‑tttt‑‑tttta‑‑tttt                                                                                                                         >  1:1462645/1‑128 (MQ=255)

              aaaaaaaaaT‑AAAAATTTTTCATTTAAAGCCATTTGTATAAAAGC‑CAATTTGCTAGGCTTTTTATTTAAATTATCAACATT‑ACAACCCTTTAAAATTGTA‑TTTTTTA‑GGG‑‑TT‑G‑‑‑‑t‑tttt‑‑ttttt‑‑tttt‑‑t                                                                                                                      <  1:236637/128‑1 (MQ=255)

              aaaaaaaaaT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGAA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑ttta‑‑ttttt‑‑tttt‑‑t                                                                                                                      >  2:2763319/1‑128 (MQ=255)

                 aaaaaaT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGt                                                                                                                   >  2:2931786/1‑128 (MQ=255)

                 aaaaaaT‑AAAAATTTTT‑ATTTTAAGCCATTTTTAAAAAACCGTTTTGTTTTTGGTTTTTTTTTATATTTTACAACTTT‑CAAACTATTTCAATGGTTA‑TTTTTTT‑GGT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGt                                                                                                                   <  1:2078042/128‑1 (MQ=255)

                  aaaaat‑aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑ttttt‑‑tttt‑‑ttttt                                                                                                                  >  1:2562579/1‑125 (MQ=255)

                  aaaaat‑aaaaatTTATAATTTAAACACAAATTTAAAAAATC‑CTATTTTATATGGTTTTTATTATACATATAAAAATT‑AAAACGCTTTAAAATTTTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑ttttt‑‑tttt‑‑tttgt                                                                                                                  <  1:1767826/128‑4 (MQ=255)

                      at‑aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GCC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTa‑aaa                                                                                                              >  1:773572/1‑128 (MQ=255)

                         taaaatTTTTTATTTAAAACAATTTGTAAAAAATG‑ATATGTTCAAGGCTTTTTATTATACTAATCAACATT‑ACAACGCTTTCAAATTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑t‑tttt‑‑ttttt‑‑tttt‑‑ttttgtaaaaa                                                                                                            <  1:2607542/127‑10 (MQ=255)

                          ataaattttCATGTTAAGCCCATTGTAAAAAATC‑ACTTTTGGTAGGCTTTTTATTTATCTTTTCCACATT‑AACAAGCTTTACAAGTGTA‑TTTTTTT‑GGG‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATa                                                                                                           <  1:2191409/123‑1 (MQ=255)

                          aaaatTATTCATTAAAACCTATTTGTAAAAAACA‑CTATTTAGAATGCTTTTTATTATAATTATAACAAAT‑AAAATCGTTTAAAATTGTT‑TTTTTTAGGGT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATa                                                                                                           <  1:342197/128‑1 (MQ=255)

                           aaatTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATaa                                                                                                          >  2:2880724/1‑128 (MQ=255)

                           aaatTTTTAATTTTAATCCATTTGTAAAAAATG‑ATATTTTTTTGGGTTTTTTTTATAATTTTAAAATTT‑ACAAAGTTTTAAAAGTTTA‑TTTTTTT‑GGT‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATaaa                                                                                                         <  1:113916/128‑1 (MQ=255)

                            aatTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTTTACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATaaaa                                                                                                        >  2:2454054/1‑128 (MQ=255)

                               ttttCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTTTATTTTT‑‑TTTT‑‑TTTTA‑AAAATaaaat                                                                                                       >  1:2540467/1‑127 (MQ=255)

                               ttttAATTTAAATCCATTTGTAAAAAATC‑CTATTTTCTATGTTTTTTATTTTACTTTTTAACATT‑TCCACGCTTTCAAATTGTT‑TTTTTTA‑TGG‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTa                                                                                                     <  1:2292802/128‑1 (MQ=255)

                                tttaatttaaATCCTTTTTTAAAAAATC‑TTTTGTTATTGTTTTTTTATTTTAATTTTCAAATTT‑ACAAAGCTTTAAAATTGTA‑TTTTTTATGTT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTa                                                                                                     <  2:1839946/128‑1 (MQ=255)

                                 ttCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TTCT‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTaa                                                                                                    >  1:1207727/1‑128 (MQ=255)

                                   aaTTTAAAGCCATTTTTAAAAAATC‑CTATTTTATAGTGTTTTTATTATAATTATCAAAAAT‑ACAACGCTTTAAAAGTGTATTTTTTTT‑GTT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGa                                                                                                  <  1:1656625/127‑1 (MQ=255)

                                   aaTTTAAAAGCATTTGTTAAAAAGT‑CTATGGTTTATGCTTTTTATTATTATTATAAACAAT‑ACAACTTTTTCAAAGTGTA‑TTTTTTA‑GGG‑‑TT‑G‑‑‑‑‑‑GTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑tt                                                                                               <  2:1243110/127‑1 (MQ=255)

                                     tttAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTT‑AAAAAAAAAATTAAA‑ttt                                                                                              >  1:881725/1‑128 (MQ=255)

                                      ttAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTT‑AAAATAAAAgatactttg                                                                                               >  1:172350/1‑120 (MQ=255)

                                      atAAACCCATTTTTAAAAAATC‑CTATGTTATATGCTTTTTATTATAATTTTAAAAATT‑AAAACGCTTTCAAATTGTA‑TTTTTTT‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑tt                                                                                               <  1:2809162/127‑1 (MQ=255)

                                       tAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAAA‑ttt                                                                                              >  1:386702/1‑128 (MQ=255)

                                       tAAACCCATTTGTAAAAAAGC‑CAATGTTCTATGGTTTTTTTTATACTTATCAACATT‑ACAACGCTTTCAAAGTTTA‑TTTTTTA‑TGCTTTT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑ttt                                                                                              <  2:2570862/128‑1 (MQ=255)

                                         aaGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TATTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGT‑TTTGGa                                                                                           >  1:2919202/1‑128 (MQ=255)

                                          aGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAACTAAAC‑TTTGGAt                                                                                          >  2:2317732/1‑128 (MQ=255)

                                           gtcATTTGTAAAAAATC‑ATATGTTCTAGGCTTTTTATTATACTTATCAAAATT‑ACAACTCTTTCAAAGTGTA‑TTTTTTA‑TGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCa                                                                                        <  2:2640357/126‑1 (MQ=255)

                                                  gTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATTAAAGTAAGA‑TTTGGATAAAC‑Caaa                                                                                 >  2:297421/1‑128 (MQ=255)

                                                   tAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTATTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAATGTAAAA‑TTTGGATACAA‑Caaaa                                                                                >  1:2679987/1‑128 (MQ=255)

                                                    aaaaaaGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTTT‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAATTAAAA‑TTTGGATAAAC‑aaaa                                                                                 >  1:2875365/1‑128 (MQ=255)

                                                      aaaaTC‑CTATTTTCTTTGGTTTTTTTTATAATTATAAAAATT‑ACAACTCTTTAAAAGTGTA‑TTTTTTA‑TGC‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACtat                                                                            <  2:342193/128‑1 (MQ=255)

                                                      aaaaGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTTTCTTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACt                                                                              >  2:2214781/1‑128 (MQ=255)

                                                          gC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GTC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAATTAAATGTAAGA‑TTTTGATAAAC‑CAAAAAtataaa                                                                         >  1:3020205/1‑126 (MQ=255)

                                                          gC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTatat                                                                          >  2:2607078/1‑128 (MQ=255)

                                                          gC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAATTAATA‑TTTGTATAAAC‑CAAAAAtaaaaa                                                                         >  1:811236/1‑124 (MQ=255)

                                                           gtctttGTTTTAGGGTTTTTTTTATAATTATCAAATAT‑AAAACGCTTTAAAATTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATc                                                                         <  2:386491/123‑1 (MQ=255)

                                                               aTGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAGA‑TTTGTATAAAC‑CAAAAATATATAaaaa                                                                     >  2:1097583/1‑128 (MQ=255)

                                                                 ttattAGTCTTTTTTTTATATTTATTAAAATT‑TCAACTTTTTTTAATTTTT‑TTTTTTT‑TGT‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCaaaaaaa                                                                  <  1:1158371/124‑1 (MQ=255)

                                                                   tCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAATTAATA‑TTTGGAAAACA‑AAAAAATATATAAAAAAAAt                                                                 >  2:1679315/1‑128 (MQ=255)

                                                                   catAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAATTAATA‑TTTGTTTCAAC‑CAAAACTATATAAAAAAAAtt                                                                >  2:1303362/3‑128 (MQ=255)

                                                                    cTAGGCTTTTTATTATACTTATCAACATT‑TCAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAATA‑TTTTTATAAAC‑AAAAAAT‑TATAaaaaaatatt                                                               >  2:1619568/1‑124 (MQ=255)

                                                                      aGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTTT‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAATAAAA‑TTTGGATAAAC‑CAAAAATATATAAAAAAAAtt                                                                >  2:2739675/1‑128 (MQ=255)

                                                                      aGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTT‑AAATTTAAAGTAAGA‑TTTGGGTAAAC‑AAAATCTTTATAAAAAAATTTaa                                                              >  1:3301027/1‑128 (MQ=255)

                                                                      aGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAATAATA‑TTTTATTAAAA‑CAAAAATATAAAAAAAAAATTaa                                                              >  2:2151829/1‑128 (MQ=255)

                                                                       ggCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAGAAATA‑TTATGAACACA‑CAAAAAAATATAAAAAAAAATaa                                                              >  2:796427/1‑128 (MQ=255)

                                                                        tcTTTTTTTTATAAATATAAAAATT‑AAAACTTTTTAAAATTTTA‑TTTTTTATGTT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTaaaa                                                            <  1:2519504/127‑1 (MQ=255)

                                                                         cTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAATAATA‑TTTTTTTCAAC‑AAAAAATAAAAAAAAAAAAATaaaaa                                                           >  2:2680349/1‑128 (MQ=255)

                                                                          tttttATTATACTTATCAACATT‑ACAACGCTATCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAATA‑TTTGGAACAAC‑CAAAAATATAACAAAAAAATTaaaaaa                                                          >  2:2999038/1‑128 (MQ=255)

                                                                             ttattaTACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAATA‑ATTTTATCAAA‑CAAAAATATA‑AAAAATAATTaaaaaaaaaa                                                      >  2:1399564/1‑126 (MQ=255)

                                                                                ttatAGTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAGTAATA‑TTTGGATCCCC‑ACAAAATATAACAAAAAAATTaaaaaaaaatct                                                    >  2:1028377/1‑124 (MQ=255)

                                                                                  ataCTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTATAAAATAAAATTAATA‑TTTGG‑TAAACACAAAAGTATATAAAAAAAATAAAATAAAAtagttt                                                  >  1:945200/1‑128 (MQ=255)

                                                                                    aCTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAAA‑TTTGGATAAAC‑CAAAAATAAAAAAAAAAAATTAAAAAAATaattttag                                                >  2:1566420/1‑128 (MQ=255)

                                                                                      ttATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAATTAATA‑TTTTGAAAAAC‑CAAAAAAATATAAAAAAAATTAAATAAAAttatttagtt                                              >  1:2109475/1‑128 (MQ=255)

                                                                                      ttATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TT‑TA‑AAAAAAAAAATAAAATTTTGGTAAAAC‑CAAAAAATAAACAAAAAAATAAAAAAAAAaatttttgtta                                             >  1:1094554/1‑127 (MQ=255)

                                                                                      ttATAAAAATT‑AAAACTCTTTTAAATTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                              <  2:2841168/128‑1 (MQ=255)

                                                                                       cattaaaaTT‑AAAACTCTTTAAATTTTTT‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTTTCTTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                              <  2:3278894/121‑1 (MQ=255)

                                                                                          cAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑TCTTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAATTAAGA‑TTTTGATAAAC‑CAAAACTTAATCAAAAAAATTAAAAAAAATAGTTTAATTGAGt                                          >  2:1151882/1‑128 (MQ=255)

                                                                                            aCATT‑ATAACGATTTAAAATTTTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑‑‑‑‑TT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCaaa                                    <  1:3195405/128‑1 (MQ=255)

                                                                                             cATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAATA‑TTTTGATCAAA‑CAAAAATTTTTAAAAAAATTTTAAAAAAATATTTTATTTgttatta                                       >  2:3238148/1‑122 (MQ=255)

                                                                                              aTT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAATAAAA‑TTTTTATAAAC‑CAAAAATATATAAAAAAAATTAAAAAAAAAattttattttatttta                                       >  2:2364197/1‑127 (MQ=255)

                                                                                               tt‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAATTAATA‑TTTGTAAAACA‑AAAAAATATAAAAAAAAATATAAAAAAAATATTTTATTTAAttttaa                                      >  1:2956238/1‑126 (MQ=255)

                                                                                                t‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTTT‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAGTAATA‑TTTGGATAAAA‑CAAAAATATTTAAAAAAAATTAAAAAAAAtattttatttaatttaaa                                      >  2:2534736/1‑120 (MQ=255)

                                                                                                t‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAGTAATA‑TTTGGATAAAC‑AAAAAAAATATAAAAAAAATTAAAAAAAAAAGTTTATTTTAGTTTCAAAt                                   >  2:733230/1‑128 (MQ=255)

                                                                                                  aCAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAATA‑ATTTGATCAAC‑CAAAAATATTTAAAAAAAATTTAAAAAAATTTTTTTGTTTAGTTTaaaa                                    >  2:455941/1‑128 (MQ=255)

                                                                                                  aCAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAGTAAGA‑TTTGGATAACC‑CAAAACATTAAAAAAAAAATTAAAAAAAATATTTTTGTTGCTTTTaaaa                                    >  2:3200233/1‑128 (MQ=255)

                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAGTAATA‑TTTGAAAAAAC‑CAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTAGTTTATTTTAAAAtat                                 >  2:1931986/1‑126 (MQ=255)

                                                                                                         tttCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAAAAAAAGTAAGA‑TTTGGAAAAAA‑CAAAAATATATAAAAAAAAATAAAAAAAATAAATTTATTAAGTTTCAAAACTGctaa                            >  2:1499378/1‑125 (MQ=255)

                                                                                                          tttattgtttttttttttG‑GTT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                           <  1:3119351/116‑1 (MQ=255)

                                                                                                          ttCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAAAAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAATCTGCatata                          >  1:2750206/1‑128 (MQ=255)

                                                                                                           tCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GTT‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAGA‑TTTGGATCAAC‑CAAAAATAAAACAAAAAAATTAAAAAAAATATTTTATTTTAGTTTaaaaaaagaatat                           >  1:2641188/1‑119 (MQ=255)

                                                                                                            cAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAAGTAATA‑TTTTGATAAAC‑CAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAATATgaaatata                         >  2:2718278/1‑121 (MQ=255)

                                                                                                            cAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAGA‑TTTTGATAAAC‑AAAAAAAATATAAAAAAAAATAAAAAAAATAGATTATTTGAATTTAAAATCTTAAtatata                        >  1:1898000/1‑128 (MQ=255)

                                                                                                               aGTGTA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAATTAAGA‑TTTGGATACAC‑CAAAAAAATATCAAAAAAATTAAATAAAATAGTTTTTTTTATATTAAAATCTGCAATTATAGt                      >  2:1709037/1‑128 (MQ=255)

                                                                                                                gtgtA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAAAAAAATTAATA‑TTTGGATCAAA‑CAAAACTATAAAAAAAAAATTAAAAAAAATAGTTTAGTTGATTTTCAAATCTGCAAATTTAGTa                     >  2:2006664/1‑128 (MQ=255)

                                                                                                                 tgtA‑TTTTTTA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAATAAATA‑TTTTGATCAAC‑AAAAACAATATCAAAAAAATTAAAAAAAAATATTTATTTATTTTTAAAATCTGCatattatatac                    >  1:2979447/1‑121 (MQ=255)

                                                                                                                  gtA‑TTTTTTA‑GGC‑‑TT‑GTTTTT‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAATAAAA‑TTTTTATAAAC‑CAAAAAAATTTGAAAAAAATTAAAAAAAAAAGTTTATTTATTTTTCTAAAATACAtatataat                      >  2:1054777/1‑126 (MQ=255)

                                                                                                                   tttttttttT‑GAT‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                  <  1:829617/125‑1 (MQ=255)

                                                                                                                   tA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAGA‑TTTGGAACAAA‑AAAAAATATATAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAATATGAATATATAGTAaaaa                 >  2:1182864/1‑128 (MQ=255)

                                                                                                                     tttttttT‑GGC‑‑TT‑T‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAg                <  1:718779/127‑1 (MQ=255)

                                                                                                                        ttttA‑GGC‑‑TT‑GTTT‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAATT‑ATTGGATCAAC‑CAAAAATATATCAAAAAAATTAAAAAAAAATATTTATTTGAATTTCAAAAATGCAaatataattaaaag                >  2:3036818/1‑120 (MQ=255)

                                                                                                                        ttttA‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAATA‑TTTGTATCAAC‑AAAAACTATAAAAAAAAAATTAAAAAAAATATTTTAATTAAGTTAAAAAAATACAtatatataaaaaaata              >  2:514484/1‑118 (MQ=255)

                                                                                                                         tttA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAAAAAAAGTAAGA‑TTTGGATAAAC‑AAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTTAGTTTAAAAAATTAATATATAGTAAAAAGTAAt            >  2:2486469/1‑128 (MQ=255)

                                                                                                                            a‑GGC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAATAAAATTAAGA‑TTTGGATCAAC‑CAAAACTAAAAAAAAAAAATTAAAAAAAAAATTTTATTTGAGTTTCAAAAATGCATATATATTAAAAAAGAAatt          >  2:3096962/1‑128 (MQ=255)

                                                                                                                               gC‑‑TT‑GT‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTTTA‑AAAAAAAAAATAAAA‑TTTGGAAAACC‑CAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTTAGTATCAAATCTACATATATATTACAAAATAATTTAt        >  2:83327/1‑128 (MQ=255)

                                                                                                                                   ttttttttt‑tttt‑‑ttttt‑‑tttt‑‑ttGTA‑ATATTATATTTTAGT‑TTTGTATAATA‑TAAAATTATATAAAAATAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:2457641/120‑1 (MQ=255)

                                                                                                                                   ttttttttt‑tttt‑‑ttttt‑‑tttt‑‑ttGTA‑AAAATATAAGTAAGA‑TTTGTATAAAA‑CAAAACTATATATAAAAAATTTAAATATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  2:2089620/120‑1 (MQ=255)

                                                                                                                                     ttttttt‑tttt‑‑ttttt‑‑tttt‑‑ttGTA‑AAAATAATATTAATA‑TTTTTATAAAA‑TAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTTATTTTCAAATATGCATATATAGTACAAAGGAATTTAt        <  1:1965571/122‑1 (MQ=255)

                                                                                                                                     gattttt‑tttt‑‑ttttt‑‑tttt‑‑ttGTA‑AAAATATAAGTAAGA‑TTTTGATTAAC‑CAAAACTATATCAAAAATATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  2:559421/122‑1 (MQ=255)

                                                                                                                                         gtt‑tttt‑‑ttttt‑‑tttt‑‑ttttA‑AAAAAAAAATTAAAT‑TTTGGTGCAAC‑CAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTATTTTTAAAAAATTCATATATTTTAAAAAGGAATTTATGATa    >  1:1037575/3‑128 (MQ=255)

                                                                                                                                           t‑tttt‑‑ttttt‑‑tttt‑‑ttttA‑AAAAAAAAATTTATA‑TTTTGAACAAC‑CAAAACTATATAAAAAAAATTAAAAAAAAAAATTTTTTTTAGTTTCAAAACTTCAAATTTTGTTCAATGTAATTTATGATata  >  1:3064512/1‑126 (MQ=255)

TTAATTTTTTTTATAAAAAAAAAT‑AAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGC‑CTATGTTCTAGGCTTTTTATTATACTTATCAACATT‑ACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑TT‑G‑‑‑‑T‑TTTT‑‑TTTTT‑‑TTTT‑‑TTGTA‑AAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.