BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,481	0	C	A	34.5%	317.3 / 53.2	328	intergenic (+259/‑416)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base C (86/111); new base A (21/83); total (119/209)
Fisher's exact test for biased strand distribution p-value = 4.68e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 363 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202353‑202604

 attGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                              <  1:3156154/126‑1 (MQ=255)

 agtGAATTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACAAT‑AAACTTAATTATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                              <  1:1028063/128‑1 (MQ=255)

  ctGAAGTTAGTGTAAATAAAAGTGGAAAGGTTAAATAAAATACCAT‑AAACATAAAAATACTTATAATGAAGATCCT‑CGTGAGCTATTTTTTTATTTGT‑TTAA‑CTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                             <  2:1978463/127‑1 (MQ=255)

   ttaatttAGTTAAAATAATAGATTTAATGTTAATTAAAATAAAAT‑AAACTAAATAATTCTTATAAATTAGATCAT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑ATTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                            <  2:220298/123‑1 (MQ=255)

   tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATATATATCAT‑CTTGATATATTTTATAATTTAT‑ATAA‑CTTAACAAAT‑AAAAAAAAAAAAAAcca                                                                                                                            >  1:2255257/1‑127 (MQ=255)

    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATcccc                                                                                                                           >  1:2758206/1‑128 (MQ=255)

     aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTATTATTTGA‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATcacat                                                                                                                          >  2:841444/1‑124 (MQ=255)

      aGTTATTTTAAATTAAATAGTTAATGTTAATTAAAATAACAT‑AAACTTTATAATTCATATAAAGTAGTTACT‑AGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                         <  2:259643/128‑1 (MQ=255)

      aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                         <  1:436633/128‑1 (MQ=255)

       gTTATTGTAAATAATATAGTATAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGAACCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  2:700084/128‑2 (MQ=255)

           gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAACACCtaaaaaa                                                                                                                    >  2:2743476/1‑122 (MQ=255)

                aataatAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑Ttaaaa‑attaaaa                                                                                                           >  1:3127113/1‑128 (MQ=255)

                  taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTT‑TTAT‑CTTCACAAAT‑AAAAAAAAAAAAAAACCC‑‑ttaaaa‑attaaaaa                                                                                                          >  1:3296761/1‑128 (MQ=255)

                  taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTT‑TTAT‑CTTCACAAAA‑AAAAAAAAAACAATCACC‑‑ttaaaa‑attaaaaa                                                                                                          >  2:2870174/1‑128 (MQ=255)

                   aataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑Ttaaaa‑attaaaaaa                                                                                                         >  2:2620495/1‑128 (MQ=255)

                    ataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTAT‑TTAT‑CTTCACAAATAAAAAAAAAAACAATACAC‑‑‑TAAAA‑AATaaaaaaa                                                                                                        >  1:1094414/1‑128 (MQ=255)

                     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCC‑‑AATAAAA‑AATaaaaaaaa                                                                                                       >  2:1761662/1‑128 (MQ=255)

                     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTAAAAAAT‑‑AAAAAAAAACAAT‑‑ACAATTAAAA‑ATTaaaaaaaaa                                                                                                      >  2:1647043/1‑128 (MQ=255)

                         gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaa                                                                                                   >  1:2483325/1‑128 (MQ=255)

                          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAAA‑ATTaaaaaaaaaaaaa                                                                                                  >  2:3235256/1‑128 (MQ=255)

                           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTT‑TTAT‑CTTCACAAAA‑AAAAAAAAAAAAATCAAC‑‑‑TAAAA‑AATaaaaaaaaaaaaaaa                                                                                                >  1:1878412/1‑128 (MQ=255)

                           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATATTTTTATTTGT‑TTAT‑CTTCACAAAA‑AAAAAAAAAAAAAACAAC‑‑TAAAAA‑AATaaaaaaaaaaaaaa                                                                                                 >  1:1752800/1‑128 (MQ=255)

                            taGGTTAATTAAAAATCAATAAAATTTAATAA‑TCTTATAAACTACAACCC‑CGTTATCTATTTTTTTATTTTT‑TTAT‑CTTAAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AAA‑ATTaaaaaaaaaaaaaaa                                                                                                <  2:1855355/127‑1 (MQ=255)

                            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AATaaaaaaaaaaaaaaaa                                                                                               >  1:3032958/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TAAT‑CTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑AAAAAA‑AATaaaaaaaaaaaaaaaa                                                                                               >  1:1432768/1‑128 (MQ=255)

                             aGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CTTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAAA‑AATtaaaaaaaaaaaaaaaa                                                                                              >  1:1917808/1‑128 (MQ=255)

                             aGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaa                                                                                               >  1:2929702/1‑128 (MQ=255)

                             aGGTTAATTAAAATACCAT‑AAACTTAATAATTCATATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTAACAAAT‑AAAAAAAAAACAAT‑‑CAAATTAAAA‑ATTaaaaaaaaaaaaaaaa                                                                                               >  2:1924852/1‑128 (MQ=255)

                              tgTTAATTAAAATAAAAT‑AAAATTAATAATTATTAAAATTTATATCAT‑CTTTATAAATTTTTTTATTTTT‑TTAT‑CTTCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaa                                                                                              <  2:3174354/127‑1 (MQ=255)

                              ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATTTATATCCT‑CTTTATCTATAATTTTATATAT‑ATAA‑ATTCACAAAA‑AAAAAAAAAAAAAAAAC‑‑‑ATAAAA‑AATaaaaaaaaaaaaaaaaaa                                                                                             >  1:67031/1‑128 (MQ=255)

                              ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTTATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATTaaaaaaaaaaaaaaaaa                                                                                              >  1:1648717/1‑128 (MQ=255)

                               tttaaataaAAAAAAAT‑AAAATTAAAAATTTTTAAAATTTATATACT‑CTTTTTATATTTTTTTTTTTTT‑TTAT‑ATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaaa                                                                                             <  2:2758206/127‑1 (MQ=255)

                                tttattaaAATAAAAA‑AAAATTAATAATTATTATAATTTATATCAT‑CGTGTTTTATTTTTTTATTTTT‑TTAT‑ATTAACAAAA‑AAAAAAAAAACAAAACCCTTT‑‑AAA‑ATTaaaaaaaaaaaaaaaaaaa                                                                                            <  2:2888397/125‑1 (MQ=255)

                                ttaattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTATTATTTGT‑TTAT‑ATTCACAAAT‑AAAAAAAAAACAAAACC‑‑‑ATAAAA‑AATtaaaaaaaaaaaaaaaaaaa                                                                                           >  2:3253919/1‑128 (MQ=255)

                                  aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  2:320236/101‑2 (MQ=255)

                                  aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAACACATTAAAAAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:2681280/1‑128 (MQ=255)

                                  aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAA‑AAAATCAACTTAAAA‑ATTaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:2572127/1‑128 (MQ=255)

                                    ttaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TAAAAA‑AATaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:709381/1‑126 (MQ=255)

                                    ttaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAAA‑AATaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:2961128/1‑126 (MQ=255)

                                      aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAAT‑‑CCAAATAAAA‑ATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:803762/1‑124 (MQ=255)

                                      aaaaTAAAAA‑AAAATTAATAATTTTTATAATTTTTATCCT‑CGTTTTTTTTTTTTTTTTTTTT‑TTAT‑ATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaaaaaaacta                                                                                      <  1:3235256/128‑5 (MQ=255)

                                       aaaaataaaaaaaaTTAATAATTATTATAATTTATATAAA‑ATTTATAAATTTTTTTATTTTT‑TTAA‑CATAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                     <  2:961785/118‑1 (MQ=255)

                                       aaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TAAAAA‑ATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:350230/1‑123 (MQ=255)

                                        aataaaaT‑AAAATTAATAATTTTTATAATTTTTATAAT‑AGTGTTATTTTTTTTTATTTGT‑TTAT‑CTTTAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAAT‑TAAAAAAAAAAAAAAAAAAAAAAACTaa                                                                                      <  1:2565354/122‑1 (MQ=255)

                                        aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:393669/1‑128 (MQ=255)

                                        aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑ATAAAA‑ATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:944227/1‑128 (MQ=255)

                                         aaaaacaaaaaCTTAATAAATATTAAAATTTACAACCA‑CGTTATCAATTTTTTTAATTTT‑TTAA‑CATAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                    <  2:3058508/120‑1 (MQ=255)

                                          tACCAA‑AAAAATAAAAATTTTTATAAATTATTACCT‑CTTTATATATTTTTTTATTTTT‑TTAT‑ATTCAAAAAT‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                   <  2:2695730/128‑1 (MQ=255)

                                          atacactaacattAATAATTCTTATAATTTTGATCCT‑AGTGATATATTTTTTTATTTGT‑TTAT‑ATTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  1:2623976/117‑1 (MQ=255)

                                          aaaaaaaaaaaTTAATAAATCTTATAATTTATATCCT‑AGTTTTTTATTTTTTTATTTTT‑TTAT‑ATTAAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  2:30341/121‑1 (MQ=255)

                                           tacAT‑AAAATTAATAAATCATATAATTTAGAACAA‑CCGTAACTATTTTTTTATTTTT‑TTAT‑ATAAAAAAAA‑AAAAAAAAAACAAAACCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  2:3294668/126‑1 (MQ=255)

                                             cAT‑AAAATTAATAATATTTATAATTTTTATCATACGT‑ATTTTTTTTTTTATTTTT‑TTTA‑ATATAAAAAT‑TAAAAAAAAAAAAACCCCATAAAAAT‑TTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  2:2149530/128‑1 (MQ=255)

                                              aT‑AAAATTAATAATTATAAAAATTTATATCAT‑AGTTATATATTTTTTTATTTTT‑TTAT‑ATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                             <  2:1154031/128‑1 (MQ=255)

                                                 aaaCTTAATAATTATTATAATTTATATAAT‑ATTTATATATTTTTTTATTTTT‑TTAT‑ATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:442340/128‑1 (MQ=255)

                                                  aaattAAAAATTTTTATAATTTATATACT‑CGTTATCTATTTTTTTATTTTT‑TTAT‑CTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:687772/125‑1 (MQ=255)

                                                   aattAATAATTTTTATAATTGATTTCCC‑ATTGATCTTTTTTTTTATTTTT‑TTAT‑GTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:2506017/126‑1 (MQ=255)

                                                          aatTTTAATAATTTATATCTT‑TTTTATATATTTTTTTATTTTA‑TTAT‑ATTTAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                    <  2:2425150/128‑1 (MQ=255)

                                                             ttataaaaTTTATATCCT‑CGTTATATATTTTTTTTTTTTT‑TTAA‑ATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                 <  2:350230/122‑1 (MQ=255)

                                                                    atgttttttat‑CGTTATTTTTTTTTTTTTTTTT‑TTTT‑ATTAAAAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAA‑ATTAAAAAAAAAAAAAAAAGAAAACTAAAAACAAACTCTATTTCTTAAAATTACCta                                                         <  1:281244/118‑1 (MQ=255)

                                                                          aatacaagTGATCATTTTTTTTTTTTTT‑TTAA‑AATCAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  2:1735968/121‑1 (MQ=255)

                                                                            tactcttgttatatttttttattttt‑tTAT‑ATTAACAAAA‑AAAAAAAAAAAAAAAACC‑TTAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:3193475/117‑1 (MQ=255)

                                                                             attcttttttttttttttttttttt‑tTAT‑TTTAAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  1:3073524/116‑1 (MQ=255)

                                                                             actatttttatatttttttattttt‑tTAT‑ATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:468790/118‑1 (MQ=255)

                                                                               tagttatcttatttttaATTTTT‑TTTT‑ATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:893470/117‑1 (MQ=255)

                                                                               acgttaaaaaTTTTTTTATTT‑T‑TTAA‑ATTAAAAAAA‑AAAAAAAAAAAAAAACCAAT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  2:2451754/119‑1 (MQ=255)

                                                                                ttttttttatttttttattttt‑tTAT‑ATTAAAAAAA‑AAAAAAAAAAAAAATACC‑CTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                               <  2:776641/121‑1 (MQ=255)

                                                                                 ttttttaatttttttattttt‑ttAT‑TTTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:2041781/121‑1 (MQ=255)

                                                                                  ttttatatttttttattttt‑tTAT‑ATTAACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:189948/123‑1 (MQ=255)

                                                                                    tttttttttttttttttt‑tTAT‑TTTTAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:2861835/123‑1 (MQ=255)

                                                                                     tttATTTTTTTTTTTTT‑TTATGATTAAAAAAA‑AAAAAAAAAAATATCCCCTAT‑‑AAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                          <  2:1389264/126‑1 (MQ=255)

                                                                                      attttttttttttttt‑tttT‑ATTAAAAAAA‑AAAAAAAAAAAAATAAACATATAAAA‑A‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                        <  2:1218653/125‑1 (MQ=255)

                                                                                        tattttttATTTTTATTAT‑ATTAAAAAAT‑AAAAAAAAAAAAAAACCCATT‑‑AAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                       <  2:527630/126‑1 (MQ=255)

                                                                                        aTTTTTTTATTTGT‑TTAT‑TTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:2880068/128‑1 (MQ=255)

                                                                                         tttttttattttt‑ttaT‑ATTCACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:2525480/128‑1 (MQ=255)

                                                                                         tttttttattttt‑ttaA‑TTTAAAAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1267767/128‑1 (MQ=255)

                                                                                            ttttATTTTT‑TTTT‑TTTAAAAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                 <  1:2743476/128‑1 (MQ=255)

                                                                                            ttttAATTTT‑TTAT‑ATATAAAAAA‑AAAAAAAAAAAAAAAACCAA‑TAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:1439331/128‑1 (MQ=255)

                                                                                             tttATTTTT‑TTTT‑TTTAAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  1:309779/128‑1 (MQ=255)

                                                                                             tttATTTTT‑TTAT‑TATAAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAAT‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:2328571/128‑1 (MQ=255)

                                                                                              tttttttt‑tTAT‑CATAACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                <  2:2978128/125‑1 (MQ=255)

                                                                                              ttAATTTT‑TTAT‑ATTAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  1:2896286/128‑1 (MQ=255)

                                                                                                tttttt‑tTAT‑TTTAAAAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAAA‑ATTATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  2:2033534/127‑1 (MQ=255)

                                                                                                    tttatAT‑CTTCAAAAAT‑AAAAAAAAAAAAAACTCC‑‑ATAAAA‑ATTTAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                           <  2:579669/124‑1 (MQ=255)

                                                                                                      tatat‑aTTCAAAAAT‑AATAAAAAAA‑AATTCAGTTT‑‑AAA‑AATAATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:1534021/126‑1 (MQ=255)

                                                                                                       ttttttataaaaaaa‑aaaaaaaaaaaaaaATCAATTT‑AAA‑AATAAAAAAAAAAAAAAAAAAAAACTATAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                          <  2:1669370/117‑1 (MQ=255)

                                                                                                       ttAT‑CTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAATAAAAA‑AAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                        >  2:2935366/1‑128 (MQ=255)

                                                                                                        ttaaatataaaaaa‑aaaaaaaaaaaaaaCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:3142886/118‑1 (MQ=255)

                                                                                                          ataataaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:227071/120‑1 (MQ=255)

                                                                                                            atataaaaaa‑aaaaaaaaaaaaaaaaCCCATAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:1397449/122‑1 (MQ=255)

                                                                                                             ttaaaaaaa‑aaaaaaaaaaaaaaACCATTTAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                     <  1:730960/123‑1 (MQ=255)

                                                                                                             taaaaaaaa‑aaaaaaaaaaaaATCCC‑‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  2:2723025/123‑1 (MQ=255)

                                                                                                              tacaaaaa‑aaaaaaaaaaaaATACCAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                     <  1:2170782/124‑1 (MQ=255)

                                                                                                                 caAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACAATATTTATTAAAATACCATTTTAAACCACATTTTATTTTTAAAATAAGATATTGAAAAaataaata           >  2:2809729/1‑128 (MQ=255)

                                                                                                                  aaaa‑aaaaaaaaaaaaaaaaCCAATT‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata               <  2:1107041/128‑1 (MQ=255)

                                                                                                                   aaT‑AAAAAAAAAACTATAACATTT‑‑AAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata             <  2:2360018/128‑1 (MQ=255)

                                                                                                                   aaT‑AAAAAAAAAAAAATACAC‑‑TTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata             <  2:1463268/128‑1 (MQ=255)

                                                                                                                         aataaaaaaaaACTCCTCTTTACA‑ATTTAAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTGTTAAAATAAGATATTGACATAatatatat          <  2:650074/125‑1 (MQ=255)

                                                                                                                         aaaaaaaaaaATCCCC‑‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACAATTTATTTTTAAAATAAGATATTGACATAATATATATCt        <  2:1797974/128‑1 (MQ=255)

                                                                                                                           aaaaaaaaATACACTTTTAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:2536975/128‑1 (MQ=255)

                                                                                                                               aaCAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAGATTTTTGTTAAAATAACATATTATACAAAATTTAATTTTTAAATAAATATATTAAAAAAATAATTATAAAatata  >  1:2724023/1‑128 (MQ=255)

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGT‑TTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202353‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`