New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895290 (0.290)189 (0.170)
+TTT		 67/214 13.2 36.7% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 335 (0.290)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 558 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023
                                                                                                                                        |                                                                                                                                   
ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑t                                                                                                                                     >  1:632025/1‑128 (MQ=255)
 tAATTTTTTTAAAAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTAAAAAATCCTATTTTATAGGCTTTTTATTATAATTATCAAAATTAAAACCCTTTCAAA‑TTGTATTTTTTA‑GG‑C‑‑Ttt‑‑‑‑tt                                                                                                                                    <  2:1412718/128‑1 (MQ=255)
  atttttttttAT‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑tttt                                                                                                                                  >  2:851350/3‑128 (MQ=255)
    ttttttttATAAAAAAAAATAAAAATTTTTAATTTAATCACATTTTTAAAAAATCCTATTTTTTTTGCTTTTTATTATAATTATAAAAATTAAAAAGCTTTAAAA‑Ttgttttttttt‑tg‑t‑‑ttt‑‑‑‑ttttt                                                                                                                                 <  2:644010/128‑1 (MQ=255)
     tttttttAT‑AAAAAAAATTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt                                                                                                                               >  1:1677144/1‑128 (MQ=255)
      tttattTTAAAAAAAAATAAAAATTTTTAATTTAAAGGCATTTTTAAAAAAGCCTATGTTCTTCGCTTTTTATTAAACTTATTAAAATTAAAACGTGTTCAAA‑GTGTTTTTTTTT‑GG‑G‑‑ttt‑‑‑‑ttttttt                                                                                                                               <  2:1555418/128‑1 (MQ=255)
       tttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑t                                                                                                                            >  1:122127/1‑128 (MQ=255)
       tttttATAAAAAAAAATAAAAATTTTTAATTTAAATAAATTTTTAAAAAAGTCTATGTTTTATGTTTTTTTTTTTTATTTTCAAAATTTAAAAGCTTTAAAA‑TTTTTTTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑t                                                                                                                            <  2:1816491/128‑1 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑tt                                                                                                                           >  2:2060714/1‑128 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttgtttt‑‑tt                                                                                                                           >  1:2173483/1‑128 (MQ=255)
        ttttAT‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑ttt                                                                                                                          >  2:1938299/1‑128 (MQ=255)
            ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑tttttt                                                                                                                       >  2:1974430/1‑128 (MQ=255)
             taAAAAAAAATAAAAATTTTTAATTTAAATCCATTTTTAAAAAATCCTATTTTTTTTGGTTTTTATTTTATTTATCAAAATTAAAACGCTTTCAAA‑TTTTTTTTTTTT‑TG‑T‑‑TTG‑‑‑‑ttttttt‑‑ttttttt                                                                                                                      <  2:628359/128‑1 (MQ=255)
              aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑tttttttt                                                                                                                     >  1:287981/1‑128 (MQ=255)
              aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTGTTTA‑GG‑C‑‑TTG‑‑‑‑gtttttt‑‑tttttttt                                                                                                                     >  1:263229/1‑128 (MQ=255)
               aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAATGCCTATGTTCTAGGATTTTTATTATACTTATCAAAATTACAACGCTTTCATA‑GTGTATTTTTTA‑GG‑G‑‑TGG‑‑‑‑gtttttt‑‑ttttttttt                                                                                                                    >  1:969671/1‑128 (MQ=255)
               aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑ttttttt‑‑ttttttttt                                                                                                                    >  1:2268913/1‑128 (MQ=255)
                 aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAAGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGt                                                                                                                  <  1:1495413/128‑1 (MQ=255)
                   aaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑aa                                                                                                               >  1:879018/1‑128 (MQ=255)
                    aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTT‑T‑aaaa                                                                                                             >  1:1187974/1‑128 (MQ=255)
                        taaaatTTTTAATTTAAACGCATTTGTAAAAAATGCTATTTTCTTTGCTTTTTATTATACTTATCAAAATTAAAACGCTTTCAAA‑TTGTATTTTTTT‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAt                                                                                                           <  2:1667437/127‑1 (MQ=255)
                         aaaaaTTTTAATTAAAACTCATTTTTAAAAAAGCATATGTTCTAGTCTTTTTATTATACTTTTCAAAATTACAACGCTTTCAAA‑TTGTATTTTTTA‑GG‑CTTTTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAt                                                                                                           <  1:763635/128‑1 (MQ=255)
                          aattttttCATTTTAAGCGTTTTGTAAAAAACCGTATGTTCTAGGCTTTTTTTTATTCTTATCAACATTACAACCCTTTCAAA‑GTGTATTTTTTA‑GG‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATaa                                                                                                         <  1:2043290/125‑1 (MQ=255)
                          aaatTTTTCATTTAAAGCCATTTTTAAAAAAGAGTTTGTTCTATGCTTTTTATTATACTTATCAAAATTAAAACGCTTTAAAA‑TTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATaaa                                                                                                        <  1:2342161/128‑1 (MQ=255)
                          aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTATTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑taaaaatta                                                                                                        >  1:1969531/1‑124 (MQ=255)
                          aaaaTTTTCATTTAACTCCATTTTTAAAATACCCTATTTTCTATGCTTTTTAATATAATTATCAAAATTACAACGCTTTAAAA‑GTTTATTTTTTT‑GT‑CT‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATaa                                                                                                         <  1:1539371/128‑1 (MQ=255)
                            tttttttATTTAAATCCATTTGTAAAAAAGCCTATTTTATAGGTTTTTTATTATAATTATAAAAATTAAAACGCTTTAAAATTTTTTTTTTTTG‑GG‑T‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATaaaa                                                                                                       <  2:570858/127‑1 (MQ=255)
                            atTTTTTATTTAAAGAAATTTTTTAAAAATCTTATTTTTTATTGTTTTTTTTTTAATTTTAAATATTAAAAAGATTTCAAA‑TTGTATTTTTTA‑GG‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATaaaa                                                                                                       <  1:125953/128‑1 (MQ=255)
                            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAATATtaatt                                                                                                      >  1:1023166/1‑126 (MQ=255)
                            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑A‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATaaaa                                                                                                       >  2:2082274/1‑128 (MQ=255)
                               tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑taaaataaaaatt                                                                                                    >  2:2218366/1‑125 (MQ=255)
                                ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATTaa                                                                                                   >  1:372237/1‑128 (MQ=255)
                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAATAAAATTTAAATTTg                                                                                             >  1:737265/1‑128 (MQ=255)
                                       agtgttaTTTGATAATAAGCTTATGTTATTTGATTTTTATTATACTTTTGAAAATTTAATCGCTTAAAAA‑GGTTTTTTTTTA‑GG‑C‑‑TTG‑‑‑‑‑‑TTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATc                                                                                         <  1:1986344/122‑1 (MQ=255)
                                        aatcaaTTTTTAAAAAATACTTTTTTTTATGATTTTTATTATAATTATTAACATTACAACGCTTTCAAA‑TTGTATTTTTTA‑GG‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATTAAGATTTGGa                                                                                           <  2:1507508/123‑1 (MQ=255)
                                         agacATTTGTAAAATAGACTATTTTCTTTGTTTTTTTTTATACTTTTCAAAGTTTTAAGGTTTTTAAA‑GTTTTTTTTTTT‑TG‑T‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGAt                                                                                          <  2:724896/125‑1 (MQ=255)
                                          tccATTTTTAAAAAAGACTTTGTTTTATGTTTTTTATTATAATTTTCAACATTAAAACGCTTTCAAA‑TTGTATTTTTTT‑GG‑G‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGAt                                                                                          <  2:2021644/127‑1 (MQ=255)
                                          cacATTTTTTAAAAATACTATTTTCTTTGCTTTTTTTTATAATTATAAACATTACAACTCTTTTAAA‑GTGTTTTTTTTA‑TT‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATc                                                                                         <  2:308985/126‑1 (MQ=255)
                                           acATTTTTTAAAAAGCCTATGTTTTAGTCTTTTTATTAAAATTATAAACATTAAAACCCTTTCAAA‑GTTTATTTTTTT‑TG‑C‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCaa                                                                                       <  1:214841/127‑1 (MQ=255)
                                             aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAATAATAATAATAtttttttaaac                                                                                      >  1:246449/1‑120 (MQ=255)
                                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAAATAAAATTTTGATAAACaaaa                                                                                  >  1:1727803/1‑128 (MQ=255)
                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATTAAAATTTgtaaaaaaaaaaa                                                                                 >  2:2364383/1‑116 (MQ=255)
                                                     aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATTAATGTTAGATTTGGAtatctcaaaaata                                                                              >  1:521163/1‑116 (MQ=255)
                                                       aaGCCTATGTTCTAGGCTTTTTATAATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTA‑AAAAATAAAAGAAAATTTAGGATCAACCaacaataaat                                                                           >  2:2110000/1‑120 (MQ=255)
                                                        agccattGTTCTAGGCTTTTTTTTATAATTATCAAAATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATc                                                                          <  2:2317339/122‑1 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAATTAAAAGTTAGTTTTGGGTCGACCgaaaagttttc                                                                          >  2:1356675/1‑121 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATTAATATTTGTATAAAACAAAACTATATCa                                                                         >  1:2407984/1‑128 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTATTT‑‑TTTTTTTTTTT‑AAAAATAAAATTAAATATTTTATCAACAAAAAatatataa                                                                         >  2:945811/1‑126 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑GTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAATCTAAGATTTGGGTCAACCAAAACtataga                                                                          >  1:426868/1‑126 (MQ=255)
                                                             attttatttgtttttttttATATTTTTAAACATTAAAACTCTTTAAAA‑TTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaa                                                                      <  1:2064080/117‑1 (MQ=255)
                                                              tGTTTTAGGCTTTTATTTATAATTATTAAATTTTCAACTCTTTCAAT‑TTTTATTTTTTAGGG‑T‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                     <  2:1306571/128‑1 (MQ=255)
                                                               gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑‑‑TTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGa                                                                                                 <  2:2299962/96‑1 (MQ=255)
                                                               gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑‑‑TTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGa                                                                                                 >  1:2299962/1‑96 (MQ=255)
                                                                 tttatggttttttttATAATTATCAACATTACAACGCTTTAAAA‑TTGTATTTTTTT‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                  <  1:1863629/121‑1 (MQ=255)
                                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTTAAAAAATAAAAATAATATTTTTATAAAAAAAAAAAATAAAAAAAAAAtt                                                                 >  2:798464/1‑128 (MQ=255)
                                                                   tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATAAATATTTTTATAAAACAAAAATATATAAAAAAAAtaa                                                                >  1:1758386/1‑126 (MQ=255)
                                                                   gatgCTTTTTTTTTTACATATCAAAATTACAACCGTTTTAAA‑TTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑aa                                                              <  2:2399521/125‑1 (MQ=255)
                                                                    aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATTAATATTTTGATAAACCAAAACTATATAAAAAAAATT‑a                                                               >  1:1149797/1‑128 (MQ=255)
                                                                          tttatttttattATCAACATTAAAACCCTTTCAAA‑TTGTATTTTTTA‑GG‑T‑‑TTG‑‑‑‑‑TTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAta                                                      <  2:1074175/128‑1 (MQ=255)
                                                                          tttATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GT‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATTAATTTTTGGAATAACCAAAAATTTTTAAAAAAAATT‑aaaaaaa                                                         >  2:1220742/1‑128 (MQ=255)
                                                                          tttATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATTAAAATTTGTATCAAACAAAAATATTTCAAAAAAATT‑aaaaaaat                                                        >  1:2222569/1‑127 (MQ=255)
                                                                          tttATTATACTTATAAACATTACAACGCTTTCAAA‑GTGTATTTTTTT‑TG‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑aaaaaaaa                                                        <  2:1898837/128‑1 (MQ=255)
                                                                          tttATTATAATTTTTAAAATTAAAATCTTTTAAAA‑TTGTTTTTTTTT‑TG‑G‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑aaaaaaaa                                                        <  2:766482/128‑1 (MQ=255)
                                                                           ttattaTACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATTAATATTTGGATTCACCAAAACTAATAAAAAAAAATT‑AAAAAAAAt                                                       >  2:452868/1‑128 (MQ=255)
                                                                            tattatACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATTAAAATTTGGATAAAAAAAAAATATAAAAAAAAAATT‑aaaaaaaaat                                                      >  1:497876/1‑126 (MQ=255)
                                                                            tattatACTTATCAAAATTACAAATCTTTAAAA‑TTTTATTTTTTT‑GGTT‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAta                                                      <  2:259061/128‑1 (MQ=255)
                                                                               tataCTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATTAATATTTTGTTAAACAAAAAATATATAAAAAAAATT‑AAAAAAAAtattt                                                   >  1:1810862/1‑128 (MQ=255)
                                                                                   cTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAATATTTTGATCAACCAAAACTATAAAAAAAAAAAT‑AAAAAAAAtagtttatt                                               >  2:2252894/1‑126 (MQ=255)
                                                                                     taaaaaCATTAAAACCCTTTTAAA‑GTGTATTTTTTT‑TG‑G‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGa                                            <  2:2003833/124‑1 (MQ=255)
                                                                                     tATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATTAAAATAATATTTGGTTAAACCAAAAATAAATAAAAAAAATT‑AAAAAAAAaatttttttt                                              >  2:1279523/1‑124 (MQ=255)
                                                                                     tATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAATTAATATTTGTATAAACAAAAAATTTAAAAAAAAAATT‑AAAAAAAAtattttattt                                              >  1:326449/1‑128 (MQ=255)
                                                                                            tttACAACTGATTAAAA‑TTTTATTTTTTA‑TG‑C‑‑TTT‑‑‑‑TTTTTTTTATTTTTTTTTGT‑AAAAATAATAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTc                                       <  1:2082504/127‑1 (MQ=255)
                                                                                             ttACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATTAAAATTTGGTAAAACCAAAACATTATAAAAAAAATT‑AAAAAAAATattttattttatttta                                       >  1:2251605/1‑127 (MQ=255)
                                                                                             ttACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATTTATATTTGGATAAACCAATAATATTTCAAAAAAATT‑AAAAAAAATATTTTAGTTTTGTTTCa                                      >  1:1061755/1‑128 (MQ=255)
                                                                                             ttACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTT‑‑T‑AAAAAAAAAAGTAATATTTGTATCAACCAAAAATATATAAAAAAAATT‑AAAAAAAATAGTTTATTTTACTTTCAAAta                                  >  1:549726/1‑127 (MQ=255)
                                                                                               aCAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATAAAAAATTTGATAAAACAAAAAAATAAAAAAAAAATT‑AAAAAAAAtattttaatttaattataaa                                    >  2:1149556/1‑118 (MQ=255)
                                                                                                cAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAAGTAAGATTTGGTTCAACCAAAAATTTTTAAAAAAAATT‑AAAAAAAATATTTTATTTTATGTTAAAATc                                  >  1:1122092/1‑128 (MQ=255)
                                                                                                 aaCGCTTTCAAA‑GAGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAATTAATTATTGTAACAACACAAACAAAATAAATAAAAGT‑AAAAAAAAAAGATAATTTGATGTACAAAtata                                >  2:1022650/1‑125 (MQ=255)
                                                                                                  aCGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTTTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAAGTAAAATTTGTAAAAACCAAAAAAATAAAAAAAAAATT‑AAAAAAAATAATTAATTTTATTTTAAAAt                                   >  1:1432079/1‑128 (MQ=255)
                                                                                                   ctgtttAAAA‑GTTTTTTTTTTA‑GG‑T‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                               <  2:2341599/125‑1 (MQ=255)
                                                                                                   cGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTTA‑AAAAATAAAATTAAGATTTTGTTCAACCAAAAATAAATAAAAAAAATT‑AAAAAAACTTTTTTTGTTTAGTTTaaaaataaaa                              >  1:1551231/1‑122 (MQ=255)
                                                                                                    gCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAATAAAAATAAAATTTTGAAAAACCAAAAATAAAAAAAAAAAAAT‑AAAAAAAAATTTTTATTTGAATTTCAAAtagaaa                              >  1:2122549/1‑123 (MQ=255)
                                                                                                    gCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAAAAAAGTAACTTTTGGTTCACCCAAACCTATAAAAAAAAAATT‑AAAAAAAAAATTTAATTTAAGTTACAAATATgaa                              >  1:302658/1‑126 (MQ=255)
                                                                                                    gCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAAAAAATTAATATTTGGAACAACCAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTATTTTAGTTTCAAAACTGCat                             >  1:2378935/1‑128 (MQ=255)
                                                                                                    cgtttttaatttgtATTTTTTT‑GG‑G‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                              <  1:1890630/117‑1 (MQ=255)
                                                                                                      tttCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGTT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATAAAAATTTAGATAAACCAAAAATTTATAAAAAAAATT‑AAAAAAAATAATTTAATTTAATTTaaaaaataaaa                             >  1:1936403/1‑121 (MQ=255)
                                                                                                      tttCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAAGTAAAATTTGGAAAAAACAAAAATAAAACAAAAAAATT‑AAAAAAAATAGTTTAGTTTAGTTTAAAATCTTCata                            >  2:1854146/1‑128 (MQ=255)
                                                                                                       ttCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TATTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATA‑AAAAAAAAAAATTATGTTTAGTTTAAAATCTGCataat                          >  1:677922/1‑126 (MQ=255)
                                                                                                            aattttATTTTTTA‑TG‑CT‑TTT‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                       <  1:2158822/123‑1 (MQ=255)
                                                                                                            aattgtATTTTTTT‑TG‑T‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                       <  2:2150818/125‑1 (MQ=255)
                                                                                                                        tA‑GG‑C‑‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAAAAAATTAAGATTTGGATCAACCAAAACTATATAAAAAAAATT‑AAAAAAAATATTTTATTTTAGTTTAAAATATGCATATATAGTAAAAAGTAAtt           >  1:899075/1‑128 (MQ=255)
                                                                                                                              gtgttG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  2:2120336/125‑1 (MQ=255)
                                                                                                                                 tttttttttttttt‑‑tttttttttGT‑ATAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:47265/121‑1 (MQ=255)
                                                                                                                                  ttttttttttttt‑‑tttttttttGT‑AAAAATAAAAGTAAGTTTTGGATCAACCAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  2:509645/122‑1 (MQ=255)
                                                                                                                                  ctttttttttttt‑‑tttttttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  1:2012163/122‑1 (MQ=255)
                                                                                                                                   g‑‑‑‑tttttgt‑‑ttttTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAACAAAAAAATT‑AAAAAAAATAGTTTATTTGATTTACAAATCTGCATATATATTACAAAGGAATTTATGATat   >  2:1722522/1‑127 (MQ=255)
                                                                                                                                   attttttttttt‑‑tttttttttGT‑AAAAATAAAATTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg       <  1:2194008/123‑1 (MQ=255)
                                                                                                                                    ttttttttttt‑‑ttttttttttt‑AAAAATAAAAGTAAGATTTTGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa      <  1:1387953/124‑1 (MQ=255)
                                                                                                                                        ttttttt‑‑ttttttttttt‑AAAAATAAAATTAATATTTGGTAAAACCAAAAATTTATAAAAAAAATT‑AAAAAAAAAATTTTATTTTTGTTTCAAATCTTAATTTTTTTTAAAAAGGAATTTATAAttaa  >  1:827790/1‑125 (MQ=255)
                                                                                                                                        ttttttt‑‑ttttttttttt‑AAAAAAAAAATTAATATTTGGATCAACCAAAAATATATAAAAAAAATA‑AAAAAAAATAGTTTATTTTATTTTAAAATCAGAAAATAAAGTAAAAATGAAttttatataaa  >  1:130465/1‑120 (MQ=255)
                                                                                                                                        |                                                                                                                                   
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑C‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.