Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT32.9% 1935.1 / 171.2 1092intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (591/115);  new base T (7/339);  total (598/494)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1100 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATAT  >  CP016816/76751‑77003
                                                                                                                                  |                                                                                                                                    
  atatCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTCAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGaa                                                                                                                                    <  2:597761/128‑1 (MQ=255)
      ctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTATTTA‑AAGAAAAa‑t                                                                                                                               >  1:2060502/1‑128 (MQ=255)
        ccTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATATTTTA‑AAGAAAAa‑tat                                                                                                                             >  2:1473664/1‑128 (MQ=255)
         cTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TAtt                                                                                                                            >  2:1831966/1‑128 (MQ=255)
            aaaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAa‑t                                                                                                                               <  2:826031/122‑1 (MQ=255)
             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACaa                                                                                                                       >  1:1788347/1‑128 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑t                                                                                                                 >  2:653109/1‑128 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAAAATTATATAAA‑GATAAATATTATA‑AAGAAAAA‑TATT‑AAAA‑‑C‑‑tat                                                                                                               >  1:1049247/1‑126 (MQ=255)
                  ttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑tttt                                                                                                              >  1:1831608/1‑128 (MQ=255)
                    atatatatTATTGAACTTAAGGATGTAAAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑TATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑tttttt                                                                                                            <  1:904386/128‑1 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑t                                                                                                       >  1:2250305/1‑128 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑tttattttt‑t                                                                                                       >  2:686885/1‑128 (MQ=255)
                         tatTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑tt                                                                                                      >  1:1293385/1‑128 (MQ=255)
                          atTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑ttt                                                                                                     >  1:1345651/1‑128 (MQ=255)
                           ttAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑A‑‑ttattattt‑attt                                                                                                    >  1:772020/1‑128 (MQ=255)
                            tAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑tttat                                                                                                   >  1:352427/1‑126 (MQ=255)
                              ttGAACTAAAGCATTTATAAAACAAATTAA‑TAAAAACTGTACAACCCAAATTCCCCTTTAAAATCAAATAACATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑AATT‑ACAA‑‑C‑‑ttttttttt‑ttttttt                                                                                                 <  1:313891/127‑1 (MQ=255)
                              gTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑ttttttt                                                                                                 >  1:2017379/1‑128 (MQ=255)
                                gAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑ttttatgta                                                                                               >  1:2471783/1‑123 (MQ=255)
                                   ttttatgATGTATAAAAAAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATTAA‑TATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAc                                                                                            <  1:1524375/122‑1 (MQ=255)
                                   cTTAAGGATGTATAATAAAAATTAA‑TAATAACTGTACAACCCAAATTCCACTTTAAATTAAAAAAACATTAAATAAA‑GATAAAATTTTTA‑AATAAAAA‑TATT‑AAAA‑‑C‑‑TTTTATTTT‑TTTTTTTGaaaa                                                                                            >  2:2338099/1‑127 (MQ=255)
                                   cTTAACGATGTATAATACAAATTAA‑TAAAAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑tttttggaacta                                                                                            <  1:590422/128‑8 (MQ=255)
                                    ttAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑ttttttttttaaa                                                                                           >  1:1687862/1‑122 (MQ=255)
                                     aaaGGATGTATAAAAAAAATTAATTAATAA‑TGTAAAACCCCAATTACCCTTTTAATTCAATTAACATTATATAAA‑GATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTa                                                                                          <  2:1645420/127‑1 (MQ=255)
                                      aatgctGTATAAAACAAAATAA‑AAAAAACTTTACAAACCAAAATACCCTTTAAATTAAAATAAAATTTTATAAA‑TATAAATTTTTTA‑AACAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTaa                                                                                         <  1:804911/123‑1 (MQ=255)
                                        ggATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑ttttttttt‑ttttttagtaaaaaaaa                                                                                       >  1:382673/1‑117 (MQ=255)
                                         ttttttaaataAAAATTAA‑TAAAAAAATTAAAAAACAAAATTCCCTTTAAAATAAAAAAAAATTATAAAAA‑TATAAATTTTTTA‑AATAAAAA‑AATTAAAAA‑‑T‑‑TTTTTTTTT‑TTTTTTTGGAACTAACa                                                                                       <  2:787395/121‑1 (MQ=255)
                                         gATTTAAAATAAAAATTAA‑TAAAAAATTTAAAAACCAAATTCCCATTTAAATTTAAAAAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACat                                                                                      <  2:1892391/128‑1 (MQ=255)
                                            gTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTTATTTTTTTGGacaaaacaaat                                                                                    >  1:1604408/1‑118 (MQ=255)
                                            gTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAATAAAAaata                                                                                   >  2:1336820/1‑128 (MQ=255)
                                             tataATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGTAAATAACaaaaaa                                                                                  >  2:2063107/1‑123 (MQ=255)
                                             taaaataaaaataaa‑TAAAAATTTTAAAAACAAAATTACCATTTAAATTAAAATAAAATTTTTTAAA‑TTTAAATTTTTTA‑AATAAAAA‑AATT‑A‑AA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAAt                                                                                 <  2:93645/125‑1 (MQ=255)
                                                aataAAAATTAA‑AAATAAATTTACAAACAAAATTACAATTTAAATTCAAATAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAAttt                                                                               <  1:1470589/128‑1 (MQ=255)
                                                 ataCAAATTAA‑TAATAACTGTACAACCCAAATTACCCTTTAAATTCAAATAACATTTTATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑‑‑TGTTTA‑TTTTTTTGGAACTAACAtatatgttaacc                                                                           >  2:2190965/1‑120 (MQ=255)
                                                 ataAAAAATAA‑TAATAAATTTACAACACAATTTACCCATTAAAATAAAATAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAAtttt                                                                              <  1:474484/128‑1 (MQ=255)
                                                  taCAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTTAAACTaaataaaaatataa                                                                             >  1:2122414/1‑116 (MQ=255)
                                                    cAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAATAACATATAATTTTAca                                                                           >  1:1393865/1‑127 (MQ=255)
                                                    cAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑TATTTTTT‑TTTTTTTGAATAAAACATATAATTTTAcaa                                                                          >  1:1103108/1‑126 (MQ=255)
                                                      aaataa‑taataaCTTTACAAACCAAATTACCCTTTAAATTCAAATAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑AATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCaa                                                                         <  1:1983895/125‑1 (MQ=255)
                                                        ttAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTTTAACTAACTAATAATTTAAGCAatt                                                                       >  2:386953/1‑128 (MQ=255)
                                                           a‑taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATATA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTTTAAATAACATATAATTTTACAAatattt                                                                    >  1:2319977/1‑124 (MQ=255)
                                                             taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGAAACAAACATAAAATTTTAAAAAtaatta                                                                   >  2:171808/1‑128 (MQ=255)
                                                              aataaCTGTAAAAACCAAATTCACCTTTAAATTCAAATTACATTATAAAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑CT‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                   <  1:2369963/128‑1 (MQ=255)
                                                               aaaattGTACTACCCCAATAACACTTTAAATTAAAATAAAATTTTATAAA‑CATTAATTTTTTA‑AATCAAAA‑TATT‑TAAA‑‑CTTTTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                   <  2:1257948/123‑1 (MQ=255)
                                                                  aatttaaaaaacAAATTAACCTTTAAATTTAAATAAAATTTTATAAA‑TATTAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                              <  2:1042297/117‑1 (MQ=255)
                                                                   atttACAAACAAAAATCCACTTTAAATTAAAATAAAATTATATAAA‑GATAAATTTTTTA‑AATAAAAA‑TATTAAAAA‑‑T‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                              <  1:165229/125‑1 (MQ=255)
                                                                    tttaaaaaccAAATTCCATTTTAAATTAAAAAAAAATTAAATAAA‑CTTAAATTTTTTA‑AATTAAAA‑TAAT‑ACAA‑‑C‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttc                                                            <  1:228675/120‑1 (MQ=255)
                                                                    tttaaaaacaaaaTTAACCTTTAAATTTAAATAACATTTTTTAAA‑TAAAAATTTTTTA‑AATAAAAA‑TATT‑ACAAATT‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                              <  1:2226578/118‑1 (MQ=255)
                                                                    agtaaaatcgaaaTTCACCTTTTAATTAAAATTAAATTTTATAAA‑TATTATTATTTTT‑AATTAAAA‑TATT‑ACAA‑‑C‑‑‑‑ATTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTTTTAGaatttcaa                                                          <  1:2197106/118‑1 (MQ=255)
                                                                     gTAAAACCAAAATTACAAATTAAATTAAAATAAAATTATATTAA‑GATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑‑‑‑‑ATTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                         <  1:1000213/128‑1 (MQ=255)
                                                                      taaaaCCCAAAATCCCCTTTAAATTAAAATAAAATTATATTAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑C‑‑‑TTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                         <  1:1935569/125‑1 (MQ=255)
                                                                      tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TAAT‑AAAA‑‑C‑‑TTTATTTTT‑TTTTTTTTTAAATAACTTATAATTTTACAAATTAtttaaatttaaa                                                          >  2:425107/1‑128 (MQ=255)
                                                                       taaaaacAAATTAACCTTTAAATTTAAATAAAATTATATAAA‑TTTAAATTTTTTA‑AATAAAAA‑TATTAAAAA‑‑T‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaa                                                          <  1:722195/122‑1 (MQ=255)
                                                                         aaCCCAAATTACCCTTTAAAATAAAATAACATTATATAAA‑GATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                       <  1:411047/128‑1 (MQ=255)
                                                                           aaaaaaTTTACCTTTAAATTAAAAATAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑ATAT‑AAAA‑‑A‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAatttcaatttca                                                     <  2:297591/125‑1 (MQ=255)
                                                                            caaaaTTAACCTTTAAAATCAAATAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑‑TTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                   <  1:519307/126‑1 (MQ=255)
                                                                             cAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTT‑GAAATAACAAATAATTTAACCAATTATTAGAatttcaatttcaaat                                                  >  1:626169/1‑125 (MQ=255)
                                                                             cAAATTCCCCTTTAAAATAAAATATCATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑‑‑TTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                <  1:295191/128‑1 (MQ=255)
                                                                             cAAATTACCCATTAAAATAAAAAAATATTATATAAA‑GATAAAATTTTTA‑AATAAAAA‑TATT‑AAAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                   <  2:1745972/128‑1 (MQ=255)
                                                                              aaaataaccTTTAAATTAAAATAAAATTTTATAAA‑TTTAAATTTTTTA‑AATAAAAA‑TAAT‑AAAA‑‑C‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAg                                                  <  2:1381417/121‑1 (MQ=255)
                                                                              aaaTTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAATAAAATATAATTTTAAAAATTATTaaaattaaaattaaaaca                                                  >  2:2377806/1‑122 (MQ=255)
                                                                                attaaccattAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AATAAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                <  2:2250013/120‑1 (MQ=255)
                                                                                aatacccTTTAAATTAAAATAAAAATATATAAA‑TATTAAATTTTAT‑AATAAAAA‑AAAT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                <  2:887859/124‑1 (MQ=255)
                                                                                aTTTCCATTTAAATTAAAATAAAATTATATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                <  2:522673/128‑1 (MQ=255)
                                                                                 ttCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑‑TTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                             >  2:1791386/1‑128 (MQ=255)
                                                                                    cccTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑CTTTTTTTTTTT‑TTTTTTTTTAAATAAAATATAATTTTAACAATTATAATaatataaattaaaaaaatga                                              >  1:1198186/1‑118 (MQ=255)
                                                                                        tttaaatataaTAAAATTATATAAA‑TATAAATTTTTTT‑AATAAAAATTATT‑AAAA‑‑T‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGa                                         <  2:1679660/119‑1 (MQ=255)
                                                                                        tttaaTTTAAATAAAATTTTTTAAATTATAATTTTTTTA‑ATTAAAAA‑T‑TT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                        <  2:2455776/125‑1 (MQ=255)
                                                                                        ttAAAATAAAATAAAATTATAAAAA‑TAAAAATTTTTTA‑AAGAAAAA‑AAAT‑ACAA‑‑C‑‑‑ATTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                       <  2:2015541/128‑1 (MQ=255)
                                                                                         tAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGTAACTAACATATAATTTTACAAATTATTATAATTTAAATTTCACAGATGAAtttttt                                       >  2:346162/1‑124 (MQ=255)
                                                                                         tAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑TTTTTTTT‑TTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTAAttt                                      >  1:2425591/1‑128 (MQ=255)
                                                                                          aaaataaaaTAAAATTTTATAAA‑TATAAATTTTTTA‑AATAAAAA‑TATT‑A‑AA‑‑A‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                     <  2:1198591/122‑1 (MQ=255)
                                                                                          aaaTTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑CT‑TTTTTTTTT‑TTTTTTTTTAAAAAAAATAAAATTTTACAAATTATTAGAAATTAAATTTAACATATTAATTTAtt                                       >  2:194328/1‑128 (MQ=255)
                                                                                          aaaTTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑CT‑TTTTTTTTT‑TTTTTTTGGAAATAACAAAAAATTATAACAATTTTTTGATTTTATATTAAACATATTAATTCAtt                                       >  1:659041/1‑128 (MQ=255)
                                                                                              tCAAATAAAATTAAATAAA‑GATAAATTTTATA‑AATAAAAA‑AATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                  <  2:1401892/128‑1 (MQ=255)
                                                                                               cAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTTAACAGATGAATTTATttcttat                                 >  1:1407478/1‑126 (MQ=255)
                                                                                                 aaTAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAC‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTCACATATAATTTTCCCAATTATTAGAATTTCAATTTCACAGATTAATTGAtttatgctta                               >  2:2408625/1‑121 (MQ=255)
                                                                                                  aTAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTTGAAATAAAATATAATTTTACAAATTATTTAAATTAAAAATTAACATATTAATTAAtttaatataaa                              >  2:726122/1‑120 (MQ=255)
                                                                                                     aCATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGTAAATAACATATAATTTTACAAATTATTATCATTTCAATTAACCAGATTAATTGAtttggtgtattaat                           >  2:1583064/1‑117 (MQ=255)
                                                                                                         ttttaaaa‑CATAAATTTTTTA‑AAGAAAAA‑TTTT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGt                       <  1:1555944/123‑1 (MQ=255)
                                                                                                          ttataaa‑tataaaTTTTTTA‑AATTAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCATTTTCACAGATGAATTGATTTCTTCTAATAATTTGTc                      <  1:566263/127‑1 (MQ=255)
                                                                                                          tattaacagtataaTTTTTTA‑AAGAAAAA‑TATT‑TCAA‑‑‑‑‑‑AGTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                     <  2:465418/116‑1 (MQ=255)
                                                                                                           tataAA‑TTTAAATTTTTTATATTAATAA‑AATT‑A‑TA‑‑T‑‑TTTTTTTTT‑TTTTTTTTGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAAGATGAATTGATTTCTTCAAATAATTTGTCt                     <  1:1738063/128‑1 (MQ=255)
                                                                                                             tttaaaattaaTTTTTTT‑AATAAAAA‑TATT‑‑TAA‑‑A‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                   <  2:576394/119‑1 (MQ=255)
                                                                                                              aaa‑TATAAATTTTTTA‑AAGAAAAA‑TAAT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                  <  2:2093573/128‑1 (MQ=255)
                                                                                                              aaa‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAATAAAATTTAATTTTACCAATTATTATAATTTAAATTTAAAATATTAATTGATTTATTATAAAAttttttattta                  >  1:990058/1‑121 (MQ=255)
                                                                                                               aa‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGTAAAAAACATTTAATTTTACCAATTATTATAATTTAAATTTAACAAATAAATTTATATATTCTAAAAAttataattaat                 >  1:839038/1‑119 (MQ=255)
                                                                                                                attaTAATTTTTTTA‑AAGAAAAA‑TATA‑ACAA‑‑‑‑‑ATTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                <  1:1229408/125‑1 (MQ=255)
                                                                                                                  taTAAATTTTTTA‑AATAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAg               <  1:2084686/127‑1 (MQ=255)
                                                                                                                   aTAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAAAAAAAAAATAATTTTACCAATTATATAATTTTCAATTTAAAATATGAATTGTTTTATTATAATTATTTGtatatatata              >  2:142731/1‑126 (MQ=255)
                                                                                                                     aaaTTTTTTT‑AATAAAAA‑AATT‑TAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg            <  1:142485/128‑1 (MQ=255)
                                                                                                                     aaaTTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑TTTTTTTT‑TTTTTTTGGAAATAAAAAATAATTTTAACAATTTTTTTAATTTAAATTTAAAAAATTAATTTATTTTTTATAATAAATTTTATatatatattt           >  1:2168231/1‑126 (MQ=255)
                                                                                                                      aaTTTTTTA‑AAGAAAAA‑TATT‑AAAA‑‑C‑‑‑TTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt          <  1:1136984/128‑1 (MQ=255)
                                                                                                                           tttA‑AATAAAAA‑TATT‑AAAA‑‑A‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt      <  2:2312465/128‑1 (MQ=255)
                                                                                                                           tttA‑AAGAAAAA‑TATT‑AACA‑‑C‑‑‑TTTGTTTT‑TTTTTTTGGCACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGCTGTTTTTta     <  2:2128365/128‑1 (MQ=255)
                                                                                                                             tA‑AAGAAAAA‑TATT‑ACAA‑‑CT‑TTTTTTTTT‑TTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTAACATATGAATTGATTTATTATAATAATTTTTATATATAGATTTTTTTta     >  1:1886121/1‑128 (MQ=255)
                                                                                                                             tA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAAAATTTAAATTTAACAGATGAATTGATTTATTAAAATAATTTGTATATATAGATTTTTTTtat    >  2:1097245/1‑128 (MQ=255)
                                                                                                                             tA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑‑‑‑TTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                >  2:2164934/1‑81 (MQ=255)
                                                                                                                              a‑aaGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTATTTTGGAAATAAAATAAAAATTTAACAAAAATTAAAATTTAAATTACACAAATAAATTTATTTATTATAATAATATTAATATATTCATTTTATTtata   >  2:1548290/1‑128 (MQ=255)
                                                                                                                              a‑aaGAAAAA‑ATTT‑TCAA‑‑‑‑‑ATTTTTTTT‑TTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACAGATGAATTTATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatat  <  2:1138112/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                    
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAA‑TAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATAAATTTTTTA‑AAGAAAAA‑TATT‑ACAA‑‑C‑‑TTTTTTTTT‑TTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATAT  >  CP016816/76751‑77003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑