Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA37.3% 222.9 / 37.7 247intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (71/70);  new base A (25/59);  total (106/141)
Fisher's exact test for biased strand distribution p-value = 3.33e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 278 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202354‑202604
                                                                                                                                |                                                                                                                           
agtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  1:1653535/128‑1 (MQ=255)
 gtGAAGTTATTTTAAATAATAGATTTATTGTTTATTAATATACAATAAAATTAATAAATCTTATAATCAATATCATAGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  1:678837/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGATTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:245124/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  1:1018899/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:1822327/128‑1 (MQ=255)
  tGAATTTAGTGTAAATAATAGAGTTAAGGTTAATAAAAATACAATAAACTTAATAATTCTTATAATTTAGATCATAGAGATCTATTTTTTTATTTGTTAAACATCAAAAAA‑AAAAAAAAAAAAATcaa                                                                                                                           >  2:2341030/1‑126 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                           <  2:460596/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcac                                                                                                                           >  1:185452/1‑126 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCATCGTGATCTAATTTTTTATTTATTAATATTAACAAAT‑AAAAAAAAAAAAATcac                                                                                                                           >  1:897111/1‑126 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:1961484/128‑2 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAtta                                                                                                                       >  2:273870/1‑127 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAACCCCtta                                                                                                                       >  2:623922/1‑127 (MQ=255)
      gTTAGTGAAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:221958/128‑2 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTATTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATACACttaaa                                                                                                                     >  1:280997/1‑125 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAttaaaaa                                                                                                                   >  2:2376646/1‑123 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCACttaaaaa                                                                                                                   >  2:1314793/1‑123 (MQ=255)
           tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACtaaaaaat                                                                                                                  >  2:2014315/1‑121 (MQ=255)
              aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcccataaaaaattaa                                                                                                               >  1:2044010/1‑116 (MQ=255)
                 taataGAGTTAAGGTTAAATAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ttaaaaattaaaaa                                                                                                          >  2:114980/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATtaaaaattaaaaaa                                                                                                         >  2:1926634/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑Ttaaaaattaaaaaa                                                                                                         >  2:220101/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTAATTTTTTTATCATCAAAAAT‑AAAAAAAAAAAAA‑‑AAAAATTAAAAAATaaaaaaaaa                                                                                                      >  2:1466808/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAATCACATT‑‑AAAAATaaaaaaaaa                                                                                                      >  2:886135/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTCATTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAATTAAAAAATaaaaaaaaa                                                                                                      >  1:2187932/1‑128 (MQ=255)
                      gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATAGTGATCTATATTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAAATCACATAaaaaaaaaaaaaaaaa                                                                                                       >  1:1260139/1‑128 (MQ=255)
                       agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaa                                                                                                    >  2:2428433/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAAATACC‑ATAAAAAAATaaaaaaaaaaa                                                                                                    >  2:1884077/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAC‑‑‑ATAAAAAATtaaaaaaaaaaaaa                                                                                                 >  1:1844153/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCATGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATCAAAAT‑‑‑AAAAATaaaaaaaaaaaaaaa                                                                                                >  2:52917/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                 >  2:2146318/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑‑ATAAAAAATtaaaaaaaaaaaaaa                                                                                                >  1:2062336/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                >  1:244963/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                >  1:2091427/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                               >  2:2306691/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                >  2:235560/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTG‑TTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                               >  1:1977119/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTATTTATTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCAATT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                               >  2:1126614/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACAATAAACTTAAAAATTCTTATAATGTAGATCATCGAGATCTATTTTATTATTAGTATATCTTAACAAAT‑AAAAAAAAAACAAAAAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaa                                                                                               >  2:697578/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATAACC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                               >  2:1923518/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                              >  2:566676/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaa                                                                                             >  1:258351/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAAAAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                              >  2:1306033/1‑128 (MQ=255)
                              gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTATATTTACAAAA‑TAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  1:2034919/128‑1 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTTGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:2368260/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTTTTTATCTTCACAAAT‑‑AAAAAAAAACAATCAC‑‑ATAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:1201193/1‑128 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTAGTTATCTATTTTTTTATTAGTTTATATTCACAAAT‑AAAAAAAAAAAAATAAAATTAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:10674/1‑128 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:1863758/1‑123 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:1357437/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑ATAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:1628364/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                    >  2:2105704/1‑122 (MQ=255)
                                         aacaaTAAAATTAATAATTATTAAAATTTATATCCTAGTGATCTATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  1:1390544/124‑1 (MQ=255)
                                                  aataaaaaattttATAAATTAGATACTCTTGATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑CTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:34526/117‑1 (MQ=255)
                                                           tattATAATTTATATAATCGTTTTTTATTTTTTTTTTTTTTTTTTTTTAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                               <  1:1926634/126‑1 (MQ=255)
                                                                 aaattataaactctTGATATAATTTTTTAATTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAACTCCCta                                                         <  1:1214276/118‑1 (MQ=255)
                                                                        atccatgTGATATATTTTTTTATTTGTTTAACATCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:2307846/122‑1 (MQ=255)
                                                                         tCCTCGTGATCTTTTTTTTTATTTTTTTATCATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                  <  1:2009425/128‑1 (MQ=255)
                                                                          gatattgttttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACACTTT‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:2244046/118‑1 (MQ=255)
                                                                          aaatttttattATTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAATCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  1:1689026/118‑1 (MQ=255)
                                                                              tttatatatttttttattttttTATAATAAAAAAA‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:1158771/122‑1 (MQ=255)
                                                                               ttttCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:2241146/125‑1 (MQ=255)
                                                                               ttatatATTTTTTTAATTTTTTAACATAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:1523792/123‑1 (MQ=255)
                                                                                    tttttttttatttttttaAATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:2408906/126‑1 (MQ=255)
                                                                                     ttttttttatttttttaAATTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:2187932/127‑1 (MQ=255)
                                                                                     atttttttatttttttTTATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:2047461/128‑1 (MQ=255)
                                                                                      ttttttaATTTTATAATTTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:1762308/128‑1 (MQ=255)
                                                                                       ttttttttttttttATTTTTAAAAAA‑AAAAAAAAAAAAAAACC‑‑AATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:2389801/128‑1 (MQ=255)
                                                                                       ttttttttttttttATTTTAAAATAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  2:952092/128‑1 (MQ=255)
                                                                                       ttttttttttttttAACTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:2007029/128‑1 (MQ=255)
                                                                                        ttttttttttttTATATTAAAATAA‑AAAAAAAAAAAAATCAAC‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:2290523/128‑1 (MQ=255)
                                                                                        tttttATTT‑TTTAAATTTAAAAAA‑AAAAAAAAAAAAATACCC‑TAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttaaaaataa                                   <  1:2075725/128‑8 (MQ=255)
                                                                                             aTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                            <  2:2300243/128‑1 (MQ=255)
                                                                                              ttttttttTATTAACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:540906/128‑1 (MQ=255)
                                                                                              ttttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                            <  1:2085821/128‑1 (MQ=255)
                                                                                              tttGTTTATCTTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa                             <  1:661993/128‑2 (MQ=255)
                                                                                               ttttttATTTTAATAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                          <  1:1528021/125‑1 (MQ=255)
                                                                                               ttGTTTATTATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                            <  1:174935/128‑1 (MQ=255)
                                                                                               tattttATATTTAAAAAA‑AAAAAAAAAAAAAATCCCATTT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:1176943/125‑1 (MQ=255)
                                                                                                tttttaaataatcaAAT‑AAAAAAAAAAAAAATTCCATTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:807464/116‑1 (MQ=255)
                                                                                                  tttataataaaaaaT‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:141644/117‑1 (MQ=255)
                                                                                                  tttATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATCTATTTATTAAAAAAAACAATTAAACAAAATTTATTTTATAAAAAAatatat                         >  1:1286645/1‑128 (MQ=255)
                                                                                                  tttATATTAAAAAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:1449226/128‑1 (MQ=255)
                                                                                                  tttATATTAAAAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:1335240/128‑1 (MQ=255)
                                                                                                  tttATATTAAAAAAT‑AAAAAAAAAAAAAAACCATT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:1258958/128‑1 (MQ=255)
                                                                                                  taaaaaaaaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:604730/117‑1 (MQ=255)
                                                                                                    tttatttaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:1844153/119‑1 (MQ=255)
                                                                                                    taaattaaaaaaa‑aaaaaaaaaaaaATACCATTT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:1827791/119‑1 (MQ=255)
                                                                                                    tATCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAATAATTTATAAAAATTACAAATAATAACACTTTTAATTATTAAAATatattatta                       >  2:1587431/1‑120 (MQ=255)
                                                                                                     atattttaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTATAAAATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:296425/120‑1 (MQ=255)
                                                                                                       aaaaaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:2137336/122‑1 (MQ=255)
                                                                                                        ataaaaaaa‑aaaaaaaaaaaaATCAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:2336635/123‑1 (MQ=255)
                                                                                                            aaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                <  1:1514983/127‑1 (MQ=255)
                                                                                                             aaaa‑aaaaaaaaaaaaATCCCCTT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  2:1897953/128‑1 (MQ=255)
                                                                                                               aT‑AAAAAAAAAACAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACACAATTAATAAAAATACAATATTAAAACAAAATTTATTTTTAAAATAATATATTAACAAAatata             >  1:2252284/1‑128 (MQ=255)
                                                                                                               aT‑AAAAAAAAAAAAATATAC‑TATAAAATAT‑AAAAAAAAAAAAAAAAATTACTAAAAACAAACTCTATATCTTAAAAATCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat            <  1:295163/128‑1 (MQ=255)
                                                                                                                  aaaaaaaaaaaaATACAC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  1:412490/128‑1 (MQ=255)
                                                                                                                    aaaaaaaaaaATCCCC‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:445292/128‑1 (MQ=255)
                                                                                                                    aaaaaaaaCAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTATTTTTGTTAAAAAAGCCTTTTATACCAAATTTTTTTTTTAAATAAAAATATTTAAataaattttata         >  2:1984553/1‑120 (MQ=255)
                                                                                                                    aaaaaaaaCAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAGCTGGTTCTTAAAATTCCGTTTTATACCCAAATTTATTTTTAAATTAATATATTGAAAAaataaataagta       >  2:812658/1‑124 (MQ=255)
                                                                                                                        aaaaCAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTAAATTAAATAAAAATAAATAATATACAAAATTTTATTTTTAAAATAAAATATTTAAATAATAAATATATaaa     >  1:554015/1‑127 (MQ=255)
                                                                                                                            cAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACAATATTTAGTAAAATTCCCTTTTATACCACATTTTATTTTTAAAATAAAATATATCAATAATATATatataatata  >  1:1270839/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                           
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202354‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑