Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT54.1% ‑4.5 / 173.3 218intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (30/70);  new base T (47/71);  total (77/141)
Fisher's exact test for biased strand distribution p-value = 1.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.37e-02

Only 100 of 266 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621
                                                                                                                             |                                                                                                                                 
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑Ttaaaaaat‑aaaa                                                                                                                             >  1:2248177/1‑128 (MQ=255)
  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑aaaaaaa                                                                                                                          >  1:2047461/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaa                                                                                                                        >  1:261070/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAACAACAATCCCC‑‑TTAAAAATT‑aataaaaa                                                                                                                         >  2:766982/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTCATTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAATTAAAAAAT‑aaaaaaaaa                                                                                                                        >  1:2187932/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAC‑‑‑ATAAAAAAT‑taaaaaaaa‑aaaaa                                                                                                                  >  1:1844153/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaa                                                                                                                  >  2:2146318/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATAAACATAaaaaaaaa‑aaaaaaaaa‑aaa                                                                                                                    >  2:930039/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                                                 >  2:2430654/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                                                 >  1:2091427/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTG‑TTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaa                                                                                                                >  1:1977119/1‑128 (MQ=255)
           aaGGTTAAATAAAATACCATAAACTAAAAAAATCATATAATGTATATCCTCATGATCAAATATTTAAAATGATTATCATAACAAAT‑AAAAAAAAAAAAAAAACC‑‑AAAAAAAAT‑aaaaaaaaa‑aaaaaa                                                                                                                 >  2:1406122/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaa                                                                                                                >  2:2464906/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATAATCACAAAT‑AAAAAAAAAAAAATCAAATT‑‑‑AAAAAT‑aaaaaaaaa‑aaaaaaaaa                                                                                                              >  2:1137475/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAATACCC‑‑‑TAAAAAAT‑taaaaaaaa‑aaaaaaaaa                                                                                                              >  2:2194709/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACCC‑‑‑TAAAAAAT‑taaaaaaaa‑aaaaaaaa                                                                                                               >  2:490589/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaa                                                                                                               >  2:566676/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑taaaaaaaa‑aaaaaaaaa                                                                                                              >  2:2362316/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAAACAACATaaaaaaaaa‑aaaaaaaaa‑aaaaaa                                                                                                                 >  2:1348800/1‑128 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaa                                                                                                              >  2:230370/1‑128 (MQ=255)
              gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTATATTTACAAAA‑TAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaa                                                                                                              <  1:2034919/128‑1 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                           >  2:1886191/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAA‑‑ACAAATAAAAAAAT‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                           >  1:539248/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACAACATAaaaaaaaa‑aaaaaaaaa‑aaaaaaaaaaa                                                                                                            >  2:1173809/1‑128 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAAAATT‑aaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                       >  1:2406922/1‑124 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                       >  2:2344067/1‑124 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                     >  1:1266080/1‑128 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAAATACTCTTGATCAATTTTTTTATTTGTTTATCATCACAAAT‑AAAAAAAAAAAAAAAAAC‑‑TTAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAAATaaaa                                                                                                     >  2:196257/1‑128 (MQ=255)
                        aaacaaTAAAATTAAAAAATATTATAATTTATATCATCGTTATATATTTTTTTATTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAACCC‑‑ATTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTaaaaa                                                                                                    <  1:2141488/123‑1 (MQ=255)
                           aaaTAAAATTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTAAATTTTTATAATAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                                                <  1:1380736/126‑1 (MQ=255)
                                aaCTTAAAAAATATTATAATTTAAATAATATTTATATATTTTTTTATTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAActct                                                                                            <  1:2454398/128‑1 (MQ=255)
                                  attAATTATTAATATAATGTTTATTATCGTGTAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:67230/127‑1 (MQ=255)
                                  attAATAATTAATATAATTTATATCATAGTTATATATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                          <  1:151982/127‑1 (MQ=255)
                                  aataaaaaattttATAAATTAGATACTCTTGATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑CTTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:34526/117‑1 (MQ=255)
                                      ataatTTTTATAATTTATATCAACTTTTTTTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                      <  1:1495102/128‑1 (MQ=255)
                                                        atccatgTGATATATTTTTTTATTTGTTTAACATCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                    <  1:2307846/122‑1 (MQ=255)
                                                         tcatgtttttttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑AATAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  2:2043904/117‑1 (MQ=255)
                                                         tacacgttataaaTTTTTTTATTTTTTATTTTTAACAAAA‑AAAAAAAAAAAAATACCC‑‑‑AAAAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:1224361/116‑1 (MQ=255)
                                                         tCCTCGTGATCTTTTTTTTTATTTTTTTATCATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:2009425/128‑1 (MQ=255)
                                                          gatattgttttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACACTTT‑‑AAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:2244046/118‑1 (MQ=255)
                                                             tttgttatATTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:1275388/121‑1 (MQ=255)
                                                              gTGATTTAATTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:1628364/128‑1 (MQ=255)
                                                              gTGATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:301041/128‑1 (MQ=255)
                                                              ctgaataaTTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:1705331/121‑1 (MQ=255)
                                                               tgttatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:1926251/123‑1 (MQ=255)
                                                                 taattttttttttttttttTATATTAAAAAAA‑AAAAAAAAAAAAAAAACCAATTAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:389679/123‑1 (MQ=255)
                                                                     atttttttatttttttATATTAAAAAAA‑AAAAAAAAAAAAATACAC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:178845/128‑1 (MQ=255)
                                                                      ttttttttttttTATATATTTAAAAAT‑TAAAAAAAAAAAAACAC‑‑ATTAAAAATT‑AAAAAAAAATAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:2421248/128‑1 (MQ=255)
                                                                      tttttttatttttttaTAATCAAAAAT‑AAAAAAAAAAAAAAACCC‑TAAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:2082020/128‑1 (MQ=255)
                                                                      ttttttaATTTTATAATTTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:1762308/128‑1 (MQ=255)
                                                                       ttttttttttttttATTTTTAAAAAA‑AAAAAAAAAAAAAAACC‑‑AATAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  2:2389801/128‑1 (MQ=255)
                                                                       ttttttttttttttATATTCACAAAT‑AAAAAAAAAAAAAACCCCTTT‑‑AAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  2:1906800/128‑1 (MQ=255)
                                                                       ttttttttttttttATATTAAAAAAA‑AAAAAAATAAAAATATCCTTAAATATTAA‑AAAAAAAAA‑AAAAAAAAAAATCTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:2441297/128‑1 (MQ=255)
                                                                        ttttttttttttTATATTAAAATAA‑AAAAAAAAAAAAATCAAC‑TTAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:2290523/128‑1 (MQ=255)
                                                                          tttATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                                 <  1:1965142/128‑1 (MQ=255)
                                                                           ttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAA‑TAAAAACAAAAAATATTTATTAAAATTCCCTTTTTTACCACATTTTTTTTTTAAAATaa                                               >  2:1309830/1‑128 (MQ=255)
                                                                            tATTTTTTTATAATAACAAAT‑AAAAAAAAAAACAAACCC‑‑AAAAAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:2223153/128‑1 (MQ=255)
                                                                              ttttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:2085821/128‑1 (MQ=255)
                                                                               ttttttATTTTAATAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TTAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                           <  1:1528021/125‑1 (MQ=255)
                                                                               tattttATATTTAAAAAA‑AAAAAAAAAAAAAATCCCATTT‑AAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                              <  1:1176943/125‑1 (MQ=255)
                                                                                tttttaaataatcaAAT‑AAAAAAAAAAAAAATTCCATTAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                              <  1:807464/116‑1 (MQ=255)
                                                                                  tttttttttaaaaaa‑aaaaaaaaaaaaATCACCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  2:849348/117‑1 (MQ=255)
                                                                                  tttATATTAAAAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAAT‑‑‑TAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:1335240/128‑1 (MQ=255)
                                                                                  taaaaaaaaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  1:604730/117‑1 (MQ=255)
                                                                                   ttaattaaaaaaaT‑AAAAAAAAAA‑AATAACAA‑TTAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  1:1633571/118‑1 (MQ=255)
                                                                                     ttaattaaaaaa‑aaaaaaaaaaaaATACC‑‑ATTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:1217202/120‑1 (MQ=255)
                                                                                     atattttaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTATAAAAT‑TTAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  2:296425/120‑1 (MQ=255)
                                                                                     aatatCATAAAA‑AAAAAAAAAAAAATACCC‑GTAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                        <  1:144049/124‑1 (MQ=255)
                                                                                     aTCTTAAAAAAT‑AAAAAAAAAAAAATTACC‑‑TAAAAAATT‑TAAAAAAAA‑AAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:1855217/128‑1 (MQ=255)
                                                                                       aataaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:1160386/122‑1 (MQ=255)
                                                                                        ataacaAAA‑AAAAAAAAAAAAATAACC‑‑ATAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatatta                                    <  2:153456/125‑7 (MQ=255)
                                                                                        ataaaaaaa‑aaaaaaaaaaaaATCAC‑‑ATTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                    <  1:2336635/123‑1 (MQ=255)
                                                                                          aaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                   <  1:10646/125‑1 (MQ=255)
                                                                                          aaaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  1:235560/125‑1 (MQ=255)
                                                                                          aaaaaaT‑AAAAAAAAAAAAATACC‑‑ATTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  1:2062980/125‑1 (MQ=255)
                                                                                          aaaaaaT‑AAAAAAAAAAAAAT‑CACATTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                   <  1:1299985/125‑1 (MQ=255)
                                                                                               aT‑AAAAAAAAAAAAATATAC‑TATAAAATAT‑‑AAAAAAAA‑AAAAAAAAATTACTAAAAACAAACTCTATATCTTAAAAATCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:295163/128‑1 (MQ=255)
                                                                                                t‑AAAAAAAAAAAAATACCC‑ATAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:1943968/128‑1 (MQ=255)
                                                                                                  aaaaaaaaaaaaaaACACCTTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:994259/128‑1 (MQ=255)
                                                                                                    aaaaaaaaaaATCCCC‑TAAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:445292/128‑1 (MQ=255)
                                                                                                    aaaaaaaaaaAT‑ACCATTAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:1130684/128‑1 (MQ=255)
                                                                                                    aaaaaaaaCAATCCCC‑TTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAAATAAAAAAAAACTATTTTTGTTAAAAAAGCCTTTTATACCAAATTTTTTTTTTAAATAAAAATATTTAAataaattttata                          >  2:1984553/1‑120 (MQ=255)
                                                                                                        aaaaCAATCCCC‑TTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAAATAAAAAAAAACTAAATTAAATAAAAATAAATAATATACAAAATTTTATTTTTAAAATAAAATATTTAAATAATAAATATATaaa                      >  1:554015/1‑127 (MQ=255)
                                                                                                             aaaatacaattaaaaattaaaaaAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                   <  1:167049/119‑1 (MQ=255)
                                                                                                              aaataacaataaaaatt‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                 <  2:615277/119‑1 (MQ=255)
                                                                                                               aatacatttAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:64311/122‑1 (MQ=255)
                                                                                                               aaaacctttAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  2:2232742/122‑1 (MQ=255)
                                                                                                                aaacaaataaaaaat‑taaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  2:1849076/121‑1 (MQ=255)
                                                                                                                 cacattaaaaataa‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:1574314/121‑1 (MQ=255)
                                                                                                                 aaccattaaaaattaaaaaAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  1:1894684/123‑1 (MQ=255)
                                                                                                                    atttAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:1689001/127‑1 (MQ=255)
                                                                                                                    acttAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:1876997/126‑1 (MQ=255)
                                                                                                                     cttAAAAAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:547087/127‑1 (MQ=255)
                                                                                                                      cttaaaaat‑taaaaaAAA‑AAAAAAAAAAAAATAAAAACAAACACAATTTCTTAAAATTCACTATAAAACCAAATTTTATTTTAAAAATAAAATATTAAAAAAATAtatatataatatatataaaaata         >  1:857867/4‑123 (MQ=255)
                                                                                                                       ttaaaaat‑taaaaaAAA‑AAAAAAAAAAAACAAAAAACAAAATCTATTTATAAAATTAACAAATTATAAAAAATTTAATTTTTAAAATATGAAAATTAAAAAATATATATATAATATATATAATTCtat        >  2:532916/3‑128 (MQ=255)
                                                                                                                       taaaaatt‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtat        <  2:2316815/128‑1 (MQ=255)
                                                                                                                       taaaaatt‑aaaaaaAAA‑AAAAAAAAAAAACTAAAAAAAAACTCTATTTGTTAAAATACCATTTTATACCACATTTTTTTTTTAAAATAATATTTTTAAATATTTTTAATATAATATAAATAATAatat        >  2:2154253/1‑128 (MQ=255)
                                                                                                                        aaaaaat‑‑aaaaaaAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTatat      <  2:2013615/128‑1 (MQ=255)
                                                                                                                          aaaat‑taaaaaAAA‑AAAAAAAAAAAACAAAAAAAAAACTATATTTGTTAAAATTCCCTATTATACAACATTTTATTTTTAAAATAAGATATTTAAATAATAAATATAAAATTAATAAAATAATATAtt     >  1:2102994/1‑128 (MQ=255)
                                                                                                                            tat‑ataataAAT‑AAAATAAAAAATCTAAATAGAAAATATATTTCTTTTAATTCACTATTATACATAATTTTATTTTTTAAATAAGTTATTGACATTATATATATCTAATATATATAATAATATATTGc   <  1:160528/127‑1 (MQ=255)
                                                                                                                             |                                                                                                                                 
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑