BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 311148	616 (0.370)	404 (0.200) +TATA	94/192	17.5	33.4%	intergenic (‑71/‑243)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
*	?	CP016816	311149 =	888 (0.420)	404 (0.200) +TATA	94/192	17.5	33.4%	intergenic (‑72/‑242)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1291 total aligned reads displayed.

TGTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311021‑311275

  tACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACCCACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑ta                                                                                                                                    >  1:2896915/1‑128 (MQ=255)

  tACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAATTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑ta                                                                                                                                    >  1:4190334/1‑128 (MQ=255)

  tACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑ta                                                                                                                                    >  2:1441922/1‑128 (MQ=255)

     cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATATCATACATTCAT‑‑tatat                                                                                                                                 >  2:2175587/1‑128 (MQ=255)

     cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑tatat                                                                                                                                 >  2:3365726/1‑128 (MQ=255)

     aaGTTTTAATAACTAAAACAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatat                                                                                                                                 <  2:793932/127‑1 (MQ=255)

        ttGTAATAACTAATCGAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACTCACCTTATTAAAAAATAAAATACTTGTTACATACGATACAAAAAATATATAACATACATTCTA‑‑tataaata                                                                                                                              >  1:1261952/1‑128 (MQ=255)

          gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACTATTCAAAACATATATAACATTCATTCAT‑‑tttatatata                                                                                                                            >  1:3378059/1‑128 (MQ=255)

             ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatat                                                                                                                         >  2:4248525/1‑128 (MQ=255)

             ataaCTAAACCAAATTAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatat                                                                                                                         <  2:4188045/128‑1 (MQ=255)

               aaCTAATAGAAATTATCTTAAAATTGTAATTATCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATTTAT‑‑tatatatatatatat                                                                                                                       <  1:641532/128‑1 (MQ=255)

                 cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                     >  2:1616264/1‑128 (MQ=255)

                  tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                    <  2:1478937/128‑1 (MQ=255)

                  tAATCCAAATGAACTTAAAATTGTAAGTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                    >  1:4551041/1‑128 (MQ=255)

                   aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                                   >  2:3871163/1‑128 (MQ=255)

                    atcaaaatcatattAAAATTTTTATTAACTTTTTAATTTTACAAACACCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑tatatatatatatatatata                                                                                                                  <  1:1011972/116‑1 (MQ=255)

                    atacAAATTAAATTTAAATTGTATATAAATTTTTCATATTACACACCCCTTATTATAAAATAAAAAAATTGTTTAATACTATACAAAACATATATAAAATACATTTAT‑‑tatatatatatatatatata                                                                                                                  <  1:2978729/125‑1 (MQ=255)

                    ataaaaaTTAACTTAAAATTGTAATTAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                                  <  1:2331002/124‑1 (MQ=255)

                    aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                                  >  2:2390111/1‑128 (MQ=255)

                    aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                                  >  2:3121107/1‑128 (MQ=255)

                    aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAAGACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                                  >  1:2169394/1‑128 (MQ=255)

                     tcaaaatttaattAAAATTGTAATTTAATTTTTTATTTTAAACACACCTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAAAATACATTCAT‑‑tatatatatatatatatatat                                                                                                                 <  1:4054217/117‑1 (MQ=255)

                       ctattgatattAAAATTGTTATTAAATTTTTCATTTTAAACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatat                                                                                                               <  1:4376946/119‑1 (MQ=255)

                       cAAAAGAAATTAAAATTGTAATTAACTATTTAATTTTACACACACCTTATAAAAAAAAAAAATAAATGTTAAATAATATTAAAAACATATATAACAAACAATAAT‑‑aatatatatatatatatatatat                                                                                                               <  2:1002042/128‑1 (MQ=255)

                         aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                             >  2:3620299/1‑127 (MQ=255)

                          aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat‑‑a                                                                                                          >  2:3180166/1‑128 (MQ=255)

                           tttaattAAAATAGTTATTATCTATTTTATTTTACACACAAATAATATAAAAATAAAATATTTGTTAAATAATATTAAAAACAAATATAACAAACATACAT‑‑tatatatatatatatatatatatat‑‑at                                                                                                         <  1:4470404/123‑2 (MQ=255)

                           ttaaCTAAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTTTTACATAAGATTCAAAAAATATATAACATACATTCAT‑‑tatatatatatatatatatatatat‑‑at                                                                                                         <  2:2077272/126‑2 (MQ=255)

                           tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATataaat‑‑a‑‑a                                                                                                       >  1:390996/1‑128 (MQ=255)

                             atctaaaaaTTTTATTTAACTTTTTCATTTTAAACACACCTTATTAAAAAATAAAATATTTTTTACATACTATTCAAAACATATATAACATAAATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATg                                                                                                     <  1:906485/123‑1 (MQ=37)

                               cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaat                                                                                                       >  1:1607974/1‑121 (MQ=255)

                               attAAAATTTTTATTAAATTTTTTTTTTTACACACCAATTATTAAAAAATATAATAATTTTTAAATAAGATTCAATACATATATAAAAAATATTAAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCa                                                                                                   <  2:2871004/127‑1 (MQ=19)

                                  aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATATCATACATTCAT‑‑TATATATATATATATATATATATTT‑‑a‑‑aatattta                                                                                                >  1:1405098/1‑121 (MQ=255)

                                  aaaaTTGTAATTAACTTTTTCATTTTACACACCAATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATg                                                                                             <  2:2004734/128‑1 (MQ=255)

                                   aaaTTGTAAGTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGAGTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑a‑‑aataaatat                                                                                               >  2:3045991/1‑120 (MQ=255)

                                   aaaTCGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat‑‑atataataca                                                                                                 >  1:3762270/1‑119 (MQ=255)

                                     aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATACAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATTTAG‑‑A‑‑AGGAT‑ATATga                                                                                            >  1:240766/1‑127 (MQ=255)

                                        gTAATTAACTTTTTCATTTTACACTCCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑T‑‑AAGCA‑ATATCTaat                                                                                         >  2:879843/1‑127 (MQ=255)

                                        gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGaaaa                                                                                         >  2:4531990/1‑128 (MQ=255)

                                        gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTaaa                                                                                         >  2:2546189/1‑128 (MQ=255)

                                          atttaaaattttAATTTTACACACAAATTATTAAAAAATATAATAATTTTTAAATAATATTCAAAAAATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATg                                                                                       <  2:2667369/120‑1 (MQ=25)

                                          aaTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAGCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATTCA‑ATATGTAAATg                                                                                       >  1:741223/1‑128 (MQ=255)

                                          aaTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATg                                                                                       >  2:380270/1‑128 (MQ=255)

                                             tAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATgg                                                                              >  1:1333419/1‑128 (MQ=255)

                                             tAAATTTTTTATTTTACACACCACTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAatat                                                                                <  1:3706936/128‑1 (MQ=255)

                                              aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGAA‑ATATGTAAATGAAAata                                                                                 >  1:272806/1‑128 (MQ=255)

                                                  ttttAATTTTACACACACATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATg                                                                               <  1:3121160/128‑1 (MQ=39)

                                                     taaTTTTACACAAACATAATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTataat                                                                        <  2:4148664/126‑1 (MQ=255)

                                                     tCATTTTAAACAAACATTTTTAAAAAAAAAAATACTTGTTAAAAAAGATTCAAAAAATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTataat                                                                        <  1:3057538/128‑1 (MQ=255)

                                                      cATTTTACACACACCTTATTAAAAAATAAAATACTTGTTAAATAAGATTAAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGtat                                                                           <  2:483381/128‑1 (MQ=255)

                                                         tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATTT‑‑A‑‑ATGCA‑ATATGTATATAAAAAGATGGTataat                                                                        >  1:2101567/1‑128 (MQ=255)

                                                         tttAAACACACATTATTAAAAAATAAAATACTTGTTATATAATATTAAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTataat                                                                        <  1:2825354/128‑1 (MQ=38)

                                                          ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTataata                                                                       >  2:526139/1‑128 (MQ=255)

                                                           taaacacacATTATTAAAAAATAAAATAATTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCa                                                                    <  2:3918894/125‑1 (MQ=255)

                                                             cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑AATAA‑AAATATAAAAAAAAAAATGTTAAAATATCa                                                                    >  1:3188608/1‑128 (MQ=255)

                                                              acacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑A‑‑‑A‑‑ATCCA‑ATATGTAAATGAAAATATGTTATAATAGCAAca                                                                 >  1:58153/1‑127 (MQ=255)

                                                               cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACTTACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑TAAAA‑ATATATAAAATAAAATATATGataatatcgcc                                                                  >  1:2476726/1‑123 (MQ=255)

                                                                 ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑A‑‑ATTCA‑ATATGTAAATCAAAATATTCTATAATATCAAc                                                                  >  2:1553372/1‑128 (MQ=255)

                                                                      tattaATAAATAAAATACTTGTTACATACTATTAAAAACATATATAACATACATTAAT‑‑TATATATATATATATATTTATATAT‑‑A‑‑ATACA‑ATTATTAAATAAATAAATCGTATAATATAAACCGTatat                                                           >  2:2460862/1‑128 (MQ=255)

                                                                      tattaAATAATAAAATAATTTTTTAATAAGATTAAAAAAATATATAAAATAAATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  1:1180860/128‑1 (MQ=37)

                                                                      tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATTAA‑ATATTTAAATCATAATATTATATAATAGAAACAGTTtat                                                           >  2:1068057/1‑128 (MQ=38)

                                                                      tattaAAAAATAAAATAATTTTTATATAATATTCAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  1:1501471/128‑1 (MQ=39)

                                                                      tattaAAAAATAAAATAATTTTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  2:1852378/128‑1 (MQ=255)

                                                                        ttaAAAAATAAAATACTTGTTACATACTATTCAAAAAATATATAACATAAATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                         <  2:747137/128‑1 (MQ=255)

                                                                          aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCT‑ATATGTAAATGAAAATATGGTATAATAGCCACCGTTTATAAAg                                                       >  1:3573498/1‑128 (MQ=255)

                                                                              aataaaataaTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                 <  2:332370/128‑1 (MQ=255)

                                                                               ataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATTTAAATTAAAATATGTTATAATAGCAACAGTTTATAAAGTaaaa                                                  >  2:4328532/1‑128 (MQ=255)

                                                                                  aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAA‑‑AAGAA‑ATATGTATATGAAAATATGGTAGACTATCAGCGGTATATATA‑Taaaaaa                                                >  1:1930203/1‑128 (MQ=255)

                                                                                  aaataATTGTTAGATAATATTTAAAAAATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                 <  2:2762094/128‑1 (MQ=255)

                                                                                      atttGTTATATAAGATTCAAAACATATATAAAATACATTCAT‑‑AATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGt                                           <  1:2678311/126‑1 (MQ=255)

                                                                                       cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑ATTAAACA‑ATATGTAAATCAAATTATGGTATTATACGCACCTTTTATAAAGTAAAAAAATAg                                            >  1:1787554/1‑128 (MQ=255)

                                                                                       atttttACATACGATCCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                        <  1:3638256/124‑1 (MQ=255)

                                                                                        atGTTACATACGATTCAAAAAATATATATCATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAATAAgtagtat                                         <  2:1349615/127‑2 (MQ=39)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAA‑‑AATAA‑ATATCTAAATAAAAATATTGAATAATAAAAACATTATATAAAATAAAAAAataata                                          >  2:2330672/1‑128 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAA‑‑AAGCA‑AAATAAAAAAGAAAATATTTTATAATAAAAAAATTATATATATTAAAAAAATAgaa                                          >  2:4417462/1‑126 (MQ=255)

                                                                                         tGTTACATACGATTCAAAACATATATAACAAACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATACA‑ATATGTAAAAGAAAATATATTATAAAAGAAACGATATATAAAATAAAAAAATataaaa                                        >  1:818117/1‑123 (MQ=37)

                                                                                          tttATATAAGATTCAAAAAATATATAACATACAATCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAGTAGTatat                                       <  1:1679969/127‑1 (MQ=38)

                                                                                            taaaTAAGATTCAAAATATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                     <  2:3451144/125‑1 (MQ=255)

                                                                                                 aCGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AT‑AAATATATATATAAAATAATATATTATAAAATAACAACATTTTATATATAAAAAATATaataaataaaaa                                  >  1:3829163/1‑124 (MQ=255)

                                                                                                 aCGATTAAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACtt                              <  1:4251006/128‑1 (MQ=255)

                                                                                                   taTTCAAAAAATATATAAAATACATACATTATATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtactac                                <  1:347936/127‑1 (MQ=255)

                                                                                                   gATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATTTAAATGAAAATATGATATAATAGCAACAGTATATAAAGTAAAAAAATATAAAATATACTACtt                              >  2:1775321/1‑128 (MQ=39)

                                                                                                   gATTAAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACtt                              <  2:4599160/128‑1 (MQ=255)

                                                                                                       cAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATTCA‑ATATTTAAATTAAAATATTGTATAATATCAACCGTTTATAAATTAAAAAAATATTATATATAATAattatta                          >  2:3519285/1‑127 (MQ=37)

                                                                                                       cAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATTGTATAATATCAAACGTATATAAAGTAAAAAAATAGTAAATATACTACTTAttt                          >  1:3298212/1‑128 (MQ=255)

                                                                                                        aaaaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑AAACA‑ATATTTAAATGAAAATATTATATAATAGCAAACTTTTATAAATAAAAAAAATATAAAATATACTAATTAtaaa                         >  2:1154500/1‑125 (MQ=255)

                                                                                                         aaaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATTTAAATGAAAATATGTTATAATAGCAACCTTATATAAATTAAAAAAATAGTAAATATACTACTTATTAAc                        >  2:1227967/1‑128 (MQ=39)

                                                                                                            cATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑A‑‑ATGAA‑ATATGTAAATGAAAATATGGTATAATAGCAACATTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTaat                       >  1:4605550/1‑126 (MQ=38)

                                                                                                              tatataACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGAA‑ATATGTAAATGAAAATATTTTATAATAGCAACATTTTATAAATTAAAAAAATATTATATATAATAATTATTTAataata                   >  2:3721550/1‑128 (MQ=37)

                                                                                                               atataACATAAATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                  <  2:1687637/128‑1 (MQ=255)

                                                                                                                tataACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATAATAATTATTTACTAATAAAAt               >  1:2612994/1‑128 (MQ=255)

                                                                                                                 ataACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGTTATAATAGAAACAGTTTATAAATTAAAAAAATATTATATATACTAATTATTTACTAATAAAATc              >  2:619317/1‑128 (MQ=255)

                                                                                                                    acatacatTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCt             >  2:4044734/1‑128 (MQ=255)

                                                                                                                    aaaaataattat‑‑tATATATATATATATATATATATAT‑‑A‑‑ATGCA‑AAATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAACTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt             <  1:2242424/118‑1 (MQ=39)

                                                                                                                      atacatTCATTATATATATATATATATATATATATAT‑‑A‑‑ATGAA‑ATATGTAAAATAAAATATGATATAATAGCAACCTTTTATAAAGTAAAAAAATAGAAAATATACTACTTATTTAATAATAatatat             >  1:1118208/1‑126 (MQ=37)

                                                                                                                      atacatTAAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTACAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt           <  2:2939380/128‑1 (MQ=255)

                                                                                                                       tacatTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATTTTATAATATCAAAATTTAATAAATTAAAAAAATATTAAAAATACTACTTAATAACTAATAAAAtaaatt          >  2:1933275/1‑123 (MQ=25)

                                                                                                                             cat‑‑tATATATATATATATATATATATAT‑‑A‑‑ATTAT‑ATATGTAAATGAAAATATGGTATAATAGAAACAGTTTATAAATAAAAAAAATAGTAAATATACTAATTATTTACAAATAAAATATATTtttatt    >  1:500870/1‑128 (MQ=37)

                                                                                                                             cat‑‑tATATATATATATATATATATATAT‑‑A‑‑ATGAA‑ATATTTAAATTAAATTATGTTTTAATAGCAACAGTATATAAAGTAAAAAAATATTAAATATAATAATTAATTAAAAATAAAATATATTtttaat    >  1:2008015/1‑126 (MQ=21)

                                                                                                                              at‑‑tATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATTATAGCAACCGTTTATAATGTAAAAATATAGAAAATATACTTCTTATTTACTAATAATATCTATTtttattt   >  1:4114339/1‑128 (MQ=39)

TGTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑A‑‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311021‑311275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.