New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486160 (0.080)311 (0.150) 82/252 27.0 64.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 186 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 435 total aligned reads displayed.

GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202366‑202613
                                                                                                                             |                                                                                                                               
      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑AAtaaaa‑aat‑aaaaaa                                                                                                                    >  2:4222208/1‑128 (MQ=255)
        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCACC‑‑ttaaaa‑att‑aaaaata                                                                                                                   >  2:3890094/1‑126 (MQ=255)
        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATATTCACAAAA‑AAAAAAAAAAAAATAAC‑‑‑ATAAAA‑AAT‑aaaaaaaaa                                                                                                                 >  1:283693/1‑128 (MQ=255)
            gatAAGGATAATTAAAATACCATAAACATAATAATTCTAAAAAATAAAAACCTCGTGAACTAATTTTTAAATTGTTAATCATAACAAAA‑AAAAAAAAAACAAACCAC‑‑AAAAAA‑AAT‑aaaaaaaaaaaa                                                                                                              >  1:3700016/3‑128 (MQ=255)
              tAATGTTTATTAAAATAAAATAAAATAAATAAATATTATAATTTATAAACTAGTTATATATTTTTTTATTTTTTTAACTTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑a                                                                                                          <  2:4260329/128‑1 (MQ=255)
              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑a                                                                                                          >  1:3776911/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑ACAAAAAAATTAAAA‑ATT‑aaaaaaaaaaaaa‑‑a                                                                                                          >  2:2666201/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                         >  1:1806747/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                         >  1:3933503/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAAAAACCATaaaaaa‑aaa‑aaaaaaaaaaaaa                                                                                                             >  2:2354556/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaa‑‑aaa                                                                                                        >  1:1726380/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:3568338/1‑128 (MQ=255)
               aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                         >  1:2363633/1‑128 (MQ=255)
                agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTTTTTTTTAAAATAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaa                                                                                                        <  1:4164608/125‑1 (MQ=255)
                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:1014407/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaa                                                                                                        >  1:3868150/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑‑TAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                      >  1:351140/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaa                                                                                                       >  1:4510811/1‑128 (MQ=255)
                  tttaattaaAAAAAAATAAAATTAATAATTATTATAAATTATAATCTAGTTATCTATTTTTTTATTTTTTTTTCTTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                      <  2:3600772/127‑1 (MQ=255)
                  tgtaaataaaATAACAAAAAATTAAAAAATCTTAAAATTTAGTACCACCTTATCTATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                      <  1:4000603/126‑1 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                      >  2:470120/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaa                                                                                                     >  2:3717520/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaaaaa                                                                                                     >  1:324255/1‑128 (MQ=255)
                  gTTAATTAAAATACCATAAAATTAAAAATTATTATAATTTATATACTCGTGATCTA‑TTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaa                                                                                                     <  2:1446334/128‑1 (MQ=255)
                   ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATAAAC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaa‑‑aaaaaaa                                                                                                    >  1:42117/1‑128 (MQ=255)
                    taattaaAAAAAAATAAAATTAATAATTATTATAATTTAAATCCTCGTGATAAATTTTTTTATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaac                                                                                                    <  2:4493626/128‑2 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaaaaaaaa                                                                                                  >  1:1332652/1‑127 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  2:3809202/1‑128 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TAAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  1:566975/1‑128 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTAGTTTATCATCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aataaaaaaaaaa‑‑aaaaaaaa                                                                                                   >  1:4034247/1‑128 (MQ=255)
                       ttaaAAAAAAATAAAATTAATAAATATTAAAATTTATATACTCTTTATATATTTTTTTATTTTTTTTAATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaactaa                                                                                                 <  2:159956/128‑5 (MQ=255)
                         aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTTTATATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑ATAAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaaaaaa                                                                                               >  2:2957417/1‑124 (MQ=255)
                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAAT‑‑AAAAATAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaaaaaaa                                                                                              >  1:2247770/1‑123 (MQ=255)
                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaaaaaaa                                                                                              >  1:4352252/1‑123 (MQ=255)
                           aaTACAATAAAATTAATAATTTTTTTAATTTTTATTATTTTTTTTTTTTTTTTTATTTTTTTTTTTTAAAAAAT‑ATAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaaa                                                                                             <  1:671225/128‑1 (MQ=255)
                            aaaataTAAAATTAATAATTATTATAATTTATATACTCGTTTTTTATTTTTTTTTTTTTTTATTTTAAAAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaaaa                                                                                            <  2:3621234/123‑1 (MQ=255)
                            aaaacATAAAAATAATAATTATTTAAATTTTTATCCTCTTGATATATTTTTTTTTTTTTTTATATTCACAAA‑‑AAAAAAAAAAAAAACCCCTTAAAAAATAAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaa                                                                                              <  1:4137291/124‑1 (MQ=255)
                               gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTATTTTTTTAAATACAAAAAA‑AAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                          <  2:2402113/124‑1 (MQ=255)
                               caaTAAAATTAAAAATTATTATAATTTTTATTATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaa                                                                                         <  1:3745850/126‑1 (MQ=255)
                               aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTTTTTTTTTTATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                          <  1:1654674/124‑1 (MQ=255)
                                aataaaataaaTAATTTTTTTAATTTATAACATCGTTATTTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaaa                                                                                        <  2:3744232/127‑1 (MQ=255)
                                aaaaaaaTTAAAAATTTTTATAATTTTTTACCTTGTTTTTTATTTTTTTATTTTTTTTATTTTAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAaaacaaac                                                                                       <  1:270471/125‑1 (MQ=255)
                                   aaaaataataaTTCTTATAATTTACATCCATGTGATATATTTTTTTATTTGTTTTTCTTCAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                   <  2:2469670/123‑1 (MQ=255)
                                     aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTAtt                                                                                 <  2:1712125/124‑1 (MQ=255)
                                     aCTTTATAAATATTAAAATGAATATACTCGTTATCTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                   <  2:2091838/128‑1 (MQ=255)
                                       ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAACT‑AAAAAAAAAA‑AATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAAAATAaaacaacaatcttta                                                                                >  1:2344637/1‑119 (MQ=255)
                                         tttaatTATTTTAATTTTTATCCTGTTGTTATATTTTTTTTTTTTTTTATATTTCAAAAT‑AAAAAAAAAAAAATCCCACTTAAAAA‑TATAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTAt                                                                                  <  1:2467065/126‑1 (MQ=255)
                                          ttaatTCTTTTAAATTATATACTCGTTATATATATTTTTATTTTTTTATTTTAACAAAT‑AAAAAAAAAAAAATACCCTTT‑‑AAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCt                                                                              <  2:1497813/127‑1 (MQ=255)
                                          ataaataatataATTTAGATCTTATTTATATATTTTTTTAATTTTTTAAAATCAAAAAA‑AAAAAAAAAAAAAATCCC‑CTTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTc                                                                               <  2:3782344/120‑1 (MQ=255)
                                             aatattATAATTTATATCCTCGTTTTTTATTTTTTTATTTTTTTATCATCACAAAA‑AAAAAAAAAAAAAACCCCTTAAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCtt                                                                             <  2:4195977/124‑1 (MQ=255)
                                              tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                        <  2:4139324/124‑1 (MQ=255)
                                              ttattATAATTTATATAATCGTTTTTTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                           <  1:3467847/125‑1 (MQ=255)
                                                           tatcatctttaTCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATTCACTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                           <  2:3227201/118‑1 (MQ=255)
                                                             accccgtttaatATTTTTTAATTTGTTAAAATAAAAAAAA‑AAAAAAAAAAAAACCCCC‑‑‑AAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  2:1555509/117‑1 (MQ=255)
                                                              ctctttttttatttttttaATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  1:3625606/116‑1 (MQ=255)
                                                              catCGTTATATATTTTTTTTTTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                         <  2:883503/126‑1 (MQ=255)
                                                               ctctttttattattttttttttttttAATTTAAAAAAA‑AAAAAAAAAAAAAT‑CCCAATAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  1:3837546/116‑1 (MQ=255)
                                                                   ttttatATTTTTTTTTTTGTTTTATTTAAAAAAT‑AAAAAAAAAACAA‑‑AACTCATAAAA‑AAA‑AAAAAAATAAAAA‑‑AAAAAAAACTAAAAACCAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                     <  1:948099/123‑1 (MQ=255)
                                                                      tatatttttttattttttTAAATTAAAAAAA‑AAAAAAAAAAAAAT‑ACCATTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                   <  2:1785856/126‑1 (MQ=255)
                                                                       atttttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑‑‑AAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  2:2594563/125‑1 (MQ=255)
                                                                        tatttttttattttttTATATTAACAAAT‑AAAAAAAAAAAAATACCATT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                              <  2:519172/128‑1 (MQ=255)
                                                                        attttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                              <  2:81244/126‑1 (MQ=255)
                                                                        aaTTTTTTAATTTTTTTAATTACAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                                               <  1:3418638/127‑1 (MQ=255)
                                                                         ttttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAATTCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:41814/127‑1 (MQ=255)
                                                                         ttttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑ATA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  2:3294805/127‑1 (MQ=255)
                                                                           ttttttATTTTTTTTTTTTAAAAAAT‑AAAAAAAAAAAAAATCCCCTT‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:569142/128‑1 (MQ=255)
                                                                           ttttttATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                            <  2:1234723/128‑1 (MQ=255)
                                                                            ttttttttttttTATATTAAAAAAA‑AAAAAAAAAACAAACCCC‑ATAAAAA‑ATA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  2:1113136/128‑1 (MQ=255)
                                                                            tttttATTTTTTAATCTTAAAAAAA‑AAAAAAAAAACAAAACACAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                           <  1:4394086/128‑1 (MQ=255)
                                                                             ttttttttttttATTTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                           <  1:1096133/128‑1 (MQ=255)
                                                                             ttttAATAGTTTAACATAACAAAA‑AAAAAAAAAACAAAACCC‑‑ATAAAA‑AAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACAATTTATTTTTaaaa                                          <  1:4245662/128‑1 (MQ=255)
                                                                                tATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATACC‑‑TTT‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                       <  2:3452202/128‑1 (MQ=255)
                                                                                  ttttttTATCTTAAAAAAT‑AAAAAAAAAACAATACCATTAAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                        <  2:4322924/128‑1 (MQ=255)
                                                                                   ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAA‑TAAAAAAAAAATATATTAGATAAAATTACATATTATAAAAAATTTTATTTTTAAAATAatat                                    >  2:4061521/1‑128 (MQ=255)
                                                                                    tttttATATTTAAAAAA‑AAAAAAAAAAAAAAAACC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                     <  1:4586295/126‑1 (MQ=255)
                                                                                      atattaattaaaaaT‑AAAAAAAAAAAAATACACTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                 <  2:2197574/117‑1 (MQ=255)
                                                                                        tatttaaaaaaaT‑AAAAAAAAAA‑AATAATCTATAAAAA‑TAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:3602353/119‑1 (MQ=255)
                                                                                        tataataacaAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:1588807/121‑1 (MQ=255)
                                                                                        aaaattaaaataT‑AAAAAAAAAAAAAT‑TACATTAAAAA‑ATT‑AAAATAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATAtt                                 <  2:3977603/117‑1 (MQ=255)
                                                                                         atttaaaaaaaa‑aaaaaaaaaaaaATCCC‑‑TTTAAAA‑ATT‑‑‑AAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                             <  2:1186611/120‑1 (MQ=255)
                                                                                          atttttaaaaT‑AAAAAAAAAAAAAATTCCAATAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                <  1:518498/121‑1 (MQ=255)
                                                                                           cttataaaaT‑AAAAAAAAAAAAATAGAC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                             <  2:1953107/122‑1 (MQ=255)
                                                                                           attaaaaaaa‑aaaaaaaaaaaaATCACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                            <  2:2511535/122‑1 (MQ=255)
                                                                                                 aaaa‑aaaaaaaaaaaaaaaaCACTTAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                         <  1:2986514/128‑1 (MQ=255)
                                                                                                    attaaaaaaaaaCAAT‑TACATTTAAAA‑TTT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                      <  2:35017/125‑1 (MQ=255)
                                                                                                      aaaaaaaaaaCAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAA‑TAAAAAAAAAATATATTTATAAAAATTAAAAATTAAACAACATTTTATATATAAAATAATATATAGAAATAaaataaatat                 >  2:3525778/1‑126 (MQ=255)
                                                                                                       aaaaaaaaaaaaTACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                  <  2:1906583/128‑1 (MQ=255)
                                                                                                       aaaaaaaaaCAAACCCATAAAAAAT‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                    <  2:2315194/128‑1 (MQ=255)
                                                                                                                  aaaataccattaaa‑aat‑‑aaaaaaAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:2788635/117‑1 (MQ=255)
                                                                                                                   aaataaacttaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:4418863/118‑1 (MQ=255)
                                                                                                                   aaaacccataaaa‑att‑aaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat        <  2:1014407/120‑1 (MQ=255)
                                                                                                                    ataaaattaaaa‑att‑aaaaaAAAAAAAAATAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCACTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata         <  2:1641002/122‑1 (MQ=255)
                                                                                                                    aaagaattaaaa‑att‑aaaaaAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata       <  2:4537963/122‑1 (MQ=255)
                                                                                                                     cccTTAAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa      <  2:4026748/128‑1 (MQ=255)
                                                                                                                     accattaaaaa‑taa‑aaaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa      <  1:3499641/121‑1 (MQ=255)
                                                                                                                       ccattaaaa‑attaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat     <  1:4100015/125‑1 (MQ=255)
                                                                                                                        ccataaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc   <  2:4109660/125‑1 (MQ=255)
                                                                                                                        acattaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc   <  2:1310490/123‑1 (MQ=255)
                                                                                                                         cattaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt  <  1:1063776/124‑1 (MQ=255)
                                                                                                                          ttaaaa‑attaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt  <  2:3861709/128‑1 (MQ=255)
                                                                                                                             |                                                                                                                               
GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202366‑202613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.