New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895677 (0.250)405 (0.140)
+TTT		 99/214 18.4 35.1% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 755 (0.250)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1281 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023
                                                                                                                                            |                                                                                                                                  
ttAATTTTTTTTATAAAAAAATATAAAAAATTTTTAT‑TTTAAGCCATTTGTAAATAATCCTTTGTTCTAGGCTTTTTATT‑ATACTTATCAACTTTA‑CAACGGTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑t                                                                                                                                    <  1:1154534/128‑1 (MQ=255)
ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑t                                                                                                                                    >  1:4509935/1‑128 (MQ=255)
ttAATTTTTTTTATAAAAAAAAA‑AAAAAATTTTCAT‑TTAAAGCCATTTTTTAAAAAGCCTTATTTGAAAGCATTTTATT‑TAAAATTTAAACATTACCAACG‑ATTAAAAATGTA‑ATTTTTA‑‑AG‑‑C‑Ttt‑‑‑‑tt                                                                                                                                   >  2:6324124/1‑128 (MQ=255)
   tttttttttAT‑AAAAAAAATTAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑AAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑ttttt                                                                                                                                >  2:821690/2‑128 (MQ=255)
   aTTTTTTTTATAAAAAAAAATAAAAATTTTTAAT‑TTTAATCCATTTGTAAAAAAGTCTATGTTCTAGGCTTTTTTTT‑ATACTTATAAAAATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttt                                                                                                                                 <  1:3049530/128‑1 (MQ=255)
    ttttttttATAAAAAAAAATAAAAATTTTTAAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACAATA‑AAACGCTTTCAAATTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑ttttt                                                                                                                                <  1:5819865/128‑1 (MQ=255)
    ttttttttAT‑AAAAAAAATTAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttt                                                                                                                               >  1:3556666/1‑128 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACTCTTTCAAAGTGTA‑TTTTTTA‑‑GT‑‑C‑TTG‑‑‑‑tattttttt                                                                                                                            >  1:970748/1‑128 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tgttttttt                                                                                                                            >  2:3951264/1‑128 (MQ=255)
             taAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttt                                                                                                                       >  2:5141316/1‑128 (MQ=255)
             ataaaaaaaaTAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttt                                                                                                                       >  1:2904620/3‑128 (MQ=255)
              aaaaaaaaaTAAAAATTTTTTAT‑TTTAAGCCATTTTTAAAAAAGCGTTTGTTATAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAATTGTT‑TTTTTTT‑‑GG‑‑C‑TTG‑‑‑‑ttttttttttttttt                                                                                                                      <  2:659525/128‑1 (MQ=255)
               aaaaaaaaTAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttttt                                                                                                                     >  1:5357162/1‑128 (MQ=255)
                aaaaaaaTTAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑ttttttttttttttttt                                                                                                                    >  1:2519694/1‑127 (MQ=255)
                 aaaaaaTAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttttttt                                                                                                                   >  1:5912307/1‑126 (MQ=255)
                  aaaaataaaaatTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttttttgt                                                                                                                  >  1:5732327/1‑125 (MQ=255)
                   aaaataaaaatTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑tttttttttttttttttttt                                                                                                                 >  1:1934891/1‑124 (MQ=255)
                       aaaaaatTTTTAAT‑TTAAATCCATTTTTAAAAATCTCTATTTTCTATGTTTTTTTTT‑ATAATTATTAAAATTA‑AAAAGCTTTAAAATTTTA‑TTTTTTA‑‑TG‑‑C‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                             <  1:3708092/127‑1 (MQ=255)
                        aaaaatTTTTTAT‑TTAAATCCATTTTTAAAAAATCCTATTTTTTATGCTTTTTATT‑TTAATTATCAAAATTA‑CAACGCTTTAAAATTTTATTTTTTTG‑‑GG‑‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                             <  2:123132/128‑1 (MQ=255)
                          aaatTTTTTATATAAAACCCATTTTTAAAAAACCCTATTTTTTTTGCTTTTTTTT‑ATAATTAACAAAATTA‑AAACGCTTTCAAATTGTT‑TTTTTTT‑‑GGTTT‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                             <  2:3480930/128‑1 (MQ=255)
                             attttTAT‑TTAAATAAATTTTTAAAAAATACAATTTTCTATTGTTTTTATT‑ATAATTATCAAAATTA‑AAAAGATTTAAAATTTTT‑TTTTTTT‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATaaaa                                                                                                         <  1:4181063/127‑1 (MQ=255)
                               tttAAT‑TTATAGCAATATTTATAAAATCATATTTTTTATGCTTTTTTTTAATATTTA‑CAAAAATA‑TCAAGCTTTTAAAGTGTT‑TTTTTTA‑‑TT‑‑T‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑Gt                                                                                                      <  2:4326035/128‑1 (MQ=255)
                                ttCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTaa                                                                                                    >  2:5310529/1‑128 (MQ=255)
                                ttCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTTAaaaaaaaaaatta                                                                                                    >  2:742233/1‑123 (MQ=255)
                                 ttaT‑TTAAATCCATTTGTAAAAAATCCTATTTTCTAGGATTTTTTTT‑ATAATTATTAACATTA‑AAACGATTTCAAAGTTTA‑TTTTTTA‑‑GG‑‑C‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGa                                                                                                  <  1:100803/126‑1 (MQ=255)
                                   tt‑ttAAATCCTTTTTTAAAAAAGCCTTTTTTTTTTGCTTTTTATT‑ATAATTATAAACATTA‑CAACGCTTTCAAAGTGTT‑TTTTTTT‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGAtt                                                                                                <  2:500992/127‑1 (MQ=255)
                                       tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAA‑ATAATAttttg                                                                                             >  1:697940/1‑126 (MQ=255)
                                       tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAATATAAAA‑GTAATAttttt                                                                                             >  1:437322/1‑126 (MQ=255)
                                        aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTgg                                                                                             >  2:266133/1‑128 (MQ=255)
                                        aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGGa                                                                                            >  1:2042429/1‑128 (MQ=255)
                                         aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAATATTTTGAt                                                                                           >  2:5872106/1‑128 (MQ=255)
                                          ttcaaTTTTTAAAAATTCATATGGTATAGGTTTTTTTAT‑ATA‑TTTTAAAAAATA‑AAAAGGTTTCAAATGGTA‑TTTTTTACGGG‑‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGAt                                                                                           <  1:1655288/124‑1 (MQ=255)
                                          ttactttttTAAAAAAGGATTTTTTTTATTCTTTTTATT‑TTATTTATAAAAATTA‑AAATTTTTTAAAATTGTT‑TTTTTTA‑‑GGT‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGAt                                                                                           <  2:2962494/123‑1 (MQ=255)
                                          tgtcATTTTTAAAAAATAATTTTTTTTATGCTTTTTTTT‑ATAATTATAAACATTA‑AAACGTTTTAAAATTTTA‑TTTTTTT‑‑GGA‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGAt                                                                                           <  1:3337303/125‑1 (MQ=255)
                                          aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GT‑‑C‑TTG‑‑‑‑TTTATTTTTTTTTTTTTTAAAAAAAAAA‑TTAAGAttatgaaa                                                                                          >  2:2451549/1‑122 (MQ=255)
                                           gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTATCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATAttttaaac                                                                                          >  1:1810775/1‑123 (MQ=255)
                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGGATAAA‑A‑Caat                                                                                 >  1:609707/1‑127 (MQ=255)
                                                    aaaataTCCTATGTTATTGGCATTTTATT‑ATTATTATTAAAATTA‑AAACGCTTTTAAAGTTTA‑TTTTTTT‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAAc                                                                               <  1:6230145/128‑1 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑TTAAGATTTGGTTAAA‑C‑Caaaaat                                                                              >  1:6391944/1‑126 (MQ=255)
                                                       taaGCATATGTTTTAGGCTTTTTATT‑ATACTTATCAAAATTA‑CAACTGTTTCAAATTGTA‑TTTTTTA‑‑GG‑‑A‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTatat                                                                          <  2:2121662/127‑1 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GT‑‑CTTTT‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAA‑ATAAATTTTTGATCAA‑C‑AAAAACtat                                                                            >  2:3714954/1‑128 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTTGATAAA‑C‑Aaaaaaatta                                                                           >  2:5649292/1‑123 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTTGATAaa‑a‑aaaaaaaattt                                                                          >  1:5154721/1‑122 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAGTATTTGTTAAA‑A‑CAAAAatattac                                                                         >  2:2297760/1‑125 (MQ=255)
                                                           cgatagTTCTAGGCTTTTTTTT‑ATAATTATCAAAATTA‑CAACTGTTTAAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCa                                                                        <  1:1603268/123‑1 (MQ=255)
                                                            ctagaacatAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑GTAAGATTTGTATAAA‑C‑AAAAAATATATaaaa                                                                      >  1:6469955/9‑128 (MQ=255)
                                                             tATGTTTTAGGTTTTTTTTT‑TAAATTATCAAAATTA‑AAACGGTTTCAAATTTTT‑TTTTTTA‑‑TG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCaaa                                                                      <  2:5569312/128‑1 (MQ=255)
                                                              aTGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGGTTAAA‑A‑CAAAAATATTTCaaaa                                                                     >  1:3421472/1‑128 (MQ=255)
                                                               ttttttattcTTTTTTTT‑TTATTTATAAAAAATA‑AAAAGCTTTTAAATTGTT‑TTTTTTA‑‑TG‑‑CTTTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCaaaaa                                                                    <  2:6069276/119‑1 (MQ=255)
                                                               tGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTATTATTTGGTTAAA‑C‑AAAAAATTTATaaaaaa                                                                    >  1:788282/1‑128 (MQ=255)
                                                               tGTTCGAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑GTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAATTAAAA‑GTAATTTTTGGATAAA‑A‑CAAAAATATaaaaaaaa                                                                    >  1:5006842/1‑128 (MQ=255)
                                                                  catAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑TTAATATTTTGTTCAA‑A‑CAAAACTATATCAAAAAAAtt                                                                >  1:4890327/3‑128 (MQ=255)
                                                                   cTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATAAAAAAAAtt                                                                >  2:2032477/1‑128 (MQ=255)
                                                                    ttgtttttttATT‑ATAATTATAAACATTA‑AAAAAATTTCAAATTTTA‑TTTTTTT‑‑TG‑‑T‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTa                                                               <  2:5454944/123‑1 (MQ=255)
                                                                    tAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAATTTAAA‑ATAAAATTTTGAAAAA‑A‑CAAAACTAAATAaaaaaatat                                                                >  1:5409835/1‑125 (MQ=255)
                                                                     atgattttaATT‑ATACTTATAAAAATTA‑AAACGCTTTAAAATTGTA‑TTTTTTA‑‑GG‑‑C‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTaaa                                                             <  1:6321759/124‑1 (MQ=255)
                                                                     aGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAATTAAAA‑GTATG‑TTTTGCTAAA‑CACAAAAATATATATAAAAAAtaa                                                               >  1:1303052/1‑126 (MQ=255)
                                                                     aGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTTAATTTTTGTATCAA‑A‑AAAAAATAAAAAAAAAAAAtaa                                                               >  1:5473382/1‑126 (MQ=255)
                                                                           tttATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTTTTTTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGTAAAAA‑A‑CAAAAAAATATAAAAAAAAATaaaaa                                                           >  2:5410834/1‑128 (MQ=255)
                                                                           tttATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAT‑GTATAATTAGGAACAA‑C‑AAAAAATAAAAAAAAAAAATTaaaaaaa                                                         >  2:6006056/1‑128 (MQ=255)
                                                                           tttATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑ATAAAATTTGGATCAA‑C‑CAAAAATATAACAAAAAAATTaaaaaaaaa                                                       >  2:5751219/1‑127 (MQ=255)
                                                                             tatt‑atACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAGATTTGTATCAA‑A‑CAAAACTattaaaaaaaaattaaaaaaaaaa                                                      >  1:1514984/1‑126 (MQ=255)
                                                                                   taCTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGTAAAA‑A‑CAAAAAAATTTAAAAAAAATTAAAAAAAAtattttt                                                 >  2:4834974/1‑127 (MQ=255)
                                                                                     cTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTTGATCAA‑C‑CAAAAATATTAAAAAAAAATTAAAAAAAAttttttattt                                              >  1:426199/1‑128 (MQ=255)
                                                                                     attATCAAAATTA‑CAAATCTTTAAAATTGTT‑TTTTTTA‑‑GG‑‑C‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                              <  1:5566369/127‑1 (MQ=255)
                                                                                      ttATAAAAATTA‑AAACGCTTTGAAATTGTA‑TTTTTTA‑‑TG‑‑G‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                             <  2:5965349/128‑1 (MQ=255)
                                                                                       tATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑TTAAGATTTGGATAAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAAaagtttatttt                                             >  1:2289575/1‑127 (MQ=255)
                                                                                              aattaaatatcTTTAAAATTTTA‑TTTTTTAG‑GG‑‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTc                                       <  2:3401646/118‑1 (MQ=255)
                                                                                              aTTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGGATCAA‑C‑CAAAAATTTATAAAAAAAATTAAAAAAAATattttattttattttaa                                      >  1:3785453/1‑126 (MQ=255)
                                                                                              aTTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAAAAAAA‑TTAATATTTGGAACAA‑C‑ACAAACAATAAAAAAAAAATTAAAAAAAAaagataagtttcgaatcta                                     >  2:4553190/1‑119 (MQ=255)
                                                                                                tA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAA‑GAAATATTTGGAAAAA‑C‑CAAAAGTTTATCAAAAAAATTAAAAAAAAAATTTTATTTAAGttaaaa                                     >  1:3171204/1‑124 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAGATTTTGATAAA‑C‑CAAAACAAAAAAAAAAAAATTAAAAAAAATTTATTAATTGATTTTAAAAtat                                 >  2:6229559/1‑126 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAGATTTGGATCAA‑C‑CAAAACTATTTCAAAAAAATTAAAAAAAAAATTTTATTTGATTTTAAAATATg                                >  2:1680751/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAA‑ATAATATTTGGATCAA‑C‑CAAAAATATATAAAAAAATTTAAAAAAAATTGTTTATTTGATTTTaaaaaata                                >  1:406382/1‑124 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAATATTTGGATCAA‑C‑CAAAACTAAATCAAAAAAATTAAAAAAAATATTTTATTTTATTTAAAAATCTg                                >  2:5086415/1‑128 (MQ=255)
                                                                                                      tttttttAAATTGTATTTTTTTT‑‑GT‑‑T‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                               <  2:522392/125‑1 (MQ=255)
                                                                                                        cTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑A‑CAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTGATTTTAAAATCTGCat                             >  1:2393282/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAA‑GTAAAATTTGGAACAA‑C‑CAAAAAATTTTAAAAAAAATTTAAAAAAATATTTTATTTGAGATTCAAAACTCCaaa                            >  1:2174110/1‑126 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAAATTTTGTTAAA‑A‑CAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAATGAatat                           >  1:5239458/1‑128 (MQ=255)
                                                                                                            tattatttttttttttA‑‑GG‑‑A‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatata                          <  2:615943/118‑1 (MQ=255)
                                                                                                             aaaGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAA‑TTAAAATTTGTATAAA‑A‑AAAAATTTTTAAAAAAAAATTAAAAAAAAAATTTTTTTTGTTTTTAAAATCTGCaaattat                        >  1:2803353/1‑125 (MQ=255)
                                                                                                              aaGTGTA‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTTTAAAAA‑A‑AAAAAATATATAAAAAAAATAAAAAAAAAAAATTTATTTTAAATTAAAATCTGAaaataaat                       >  2:6439561/1‑125 (MQ=255)
                                                                                                                    a‑TTTTTTA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAAAATTTTGATAAA‑C‑AAAAACATTATAAAAAAAATTAAAAAAAAAATTTTTTTTTATTTTAAAAAATGAATATATAATAaaaa                 >  2:5796887/1‑128 (MQ=255)
                                                                                                                          ttA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTTGATCAA‑C‑CAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAATAAGCATATATAGTTCAAAGGaaa            >  1:4791338/1‑127 (MQ=255)
                                                                                                                           tA‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑TTAATATTTGGAAAAA‑C‑AAAAAATTTATAAAAAAAATTAAAAAAAAATTTTTTTTTTATTTTAAAATCTGAATATATATTAAAAAGAAAtt           >  1:4648654/1‑128 (MQ=255)
                                                                                                                            a‑‑GG‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAA‑GTAATATTTGGTACAA‑C‑CAAAAATTTTTAAAAAAAATTAAAAAAAAAATTTTAATTTAGTTAAAAATAATAATTTATAGTACAAATAAAttt          >  1:2647010/1‑128 (MQ=255)
                                                                                                                               gg‑‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAA‑ATAAAATTTTTGTAAACC‑CAAAAATTAAAAAAAAAAATTAAAAAAAATTTTTTGTTTGATTTAAAAAATTACATATATTTTAAAAAGAAAttt          >  2:1483835/1‑128 (MQ=255)
                                                                                                                                    ttttttttttttttttttttttttGTAAAAATATAA‑GTAAGATTTGGATAAA‑A‑AAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:1424545/120‑1 (MQ=255)
                                                                                                                                    tgtttgttttttttttttttttttGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  2:1556215/120‑1 (MQ=255)
                                                                                                                                    agtgttgtttttttttttttttttGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:5653628/120‑1 (MQ=255)
                                                                                                                                     tttttttttttttttttttttttGTAAAAATAAAA‑GTAAGATTTGGATCAA‑T‑TAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa         <  2:35743/121‑1 (MQ=255)
                                                                                                                                     tgtttttttttttttttttttttGTAAAAATTAAA‑GTAAGATTTGGATCAA‑C‑AAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa         <  2:1930890/121‑1 (MQ=255)
                                                                                                                                      ttttttttttttttttttttttGTAATTATAAAA‑TTAAGATTTGGATCAA‑A‑AAAAAATATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCTTATATAGTACAAAGGAATTTAt        <  2:4188799/122‑1 (MQ=255)
                                                                                                                                        ttgtttttttttttttttttGTAAAAATAAAA‑GTAATATTTGGATAAA‑A‑CAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTGATTTTAAAATAGTAATATATATTAAAAAGGAtttttttt      >  1:6050537/5‑124 (MQ=255)
                                                                                                                                          ttttttttttttttttttttAAAAAAAAAA‑GTAAGATTTGTATCAA‑C‑CAAAACTATATAAAAAAAATTAAAAAAAATTTTTTATTTTATTTTAAAATCTGAATATATATTAAAAATGAATTTATtata    >  1:3892696/3‑128 (MQ=255)
                                                                                                                                          gtttttttttttttttttttAAAAATAAAA‑TTAATATTTTGATAAA‑C‑CAAAAATTTATAAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAATATTCATATATATTAAAAATGAATTTATtata    >  1:6560962/3‑128 (MQ=255)
                                                                                                                                          gtttttttttttttttttttAAAAATAAAA‑TTAATATTTGGATAAA‑C‑CAAAAATATAAAAAAAAAATTAAAAAAAATTGTTTAGTTTATTTTAAAATATAAATAAATTTTAAAAATGATTTTAttaaa    >  1:5068226/3‑124 (MQ=255)
                                                                                                                                           tttttttttttttttttGTAAAAATAAAA‑TTAAGATTTTGATCAA‑A‑CAAAACTATATCAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAAACTACATATATATAAAAAATTAATTTAAGATAg   >  1:5975235/2‑128 (MQ=255)
                                                                                                                                           tttttttttttttttttGTAAAAATAAAA‑GTAAGATTTGGATAAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg   <  2:3281592/127‑1 (MQ=255)
                                                                                                                                            ttttttttttttttttGTTAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa  <  2:1822121/128‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                  
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATT‑ATACTTATCAACATTA‑CAACGCTTTCAAAGTGTA‑TTTTTTA‑‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAA‑C‑CAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.