Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.59.3% inf / inf 2451intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (497/340);  new base . (723/495);  total (1226/1225)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-02

Only 100 of 2925 total aligned reads displayed.

AATTTATATATATTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020
                                                                                                                                 |                                                                                                                                
aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATTACAAC‑t                                                                                                                                  <  1:5497960/128‑1 (MQ=255)
 aTTTATATATATTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑t                                                                                                                                >  1:3633802/1‑128 (MQ=255)
    tatatataTTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑tttt                                                                                                                             >  2:1069109/1‑128 (MQ=255)
         ttattatTGAACTTTATGAAGTTTAAAAAAA‑ATTTATAATAATAGTACAACCCAAATTTCCCTTTAAATTAAAAAAAAATTTTATAAAGATAAATTTTTTAAAGAAAAATATTAAAAC‑t‑ttttttttt                                                                                                                        <  1:574815/127‑1 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑ttttttttt                                                                                                                        >  1:5154603/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTTTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑ttattttttt                                                                                                                       >  1:5593830/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑ttttttattt                                                                                                                       >  2:4483525/1‑128 (MQ=255)
           atTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑tattttttttt                                                                                                                      >  1:6559932/1‑128 (MQ=255)
            ttAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑tttttttttttt                                                                                                                     >  2:4249545/1‑128 (MQ=255)
                     ttAATGATTTATAATAAAA‑AATAATAATAACTGTACAAACCAAATTACCCTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTa                                                                                                           <  2:5010879/128‑1 (MQ=255)
                      tAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑tttttttttttttgtaactaaa                                                                                                           >  1:6076162/1‑119 (MQ=255)
                       aaGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑t‑ttttttttatttaaaaaaaaaaa                                                                                                          >  2:61481/1‑117 (MQ=255)
                        aGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTATTTTTTTTTTTGTAAATAAc                                                                                                         >  2:2688794/1‑128 (MQ=255)
                         tgttttataATACAA‑ATTAATAATAAATTTAAACATAAAATTCCACATTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACat                                                                                                       <  1:2606681/123‑1 (MQ=255)
                          gATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAAAATTATATAAACATAAATTTTTTAAATAAAAATATTACAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACata                                                                                                      <  1:4638209/128‑1 (MQ=255)
                           aTGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTT‑‑GAAATAACAtata                                                                                                    >  2:6488422/1‑128 (MQ=255)
                              tataATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACAAAAAaataat                                                                                                  >  1:695849/1‑128 (MQ=255)
                                taataCAATATTAATAATAA‑TTTAAAAACAAAAATAACATTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAAGAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                                <  1:489466/128‑1 (MQ=255)
                                   taCAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TATTTTTTTTTTTTT‑‑AACTAACATAATATTTTAcc                                                                                            >  2:4743480/1‑128 (MQ=255)
                                   taCAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGCAAAATACATATAATtataa                                                                                             >  1:3726112/1‑127 (MQ=255)
                                    aCAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑TATTTTTTTTTTTTGTTTGAAAAAACAATTAATTTTa                                                                                              >  1:4238158/1‑128 (MQ=255)
                                      aa‑aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                          >  2:5494970/1‑128 (MQ=255)
                                       a‑aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTATAACAAACAAATAATTTTACAAat                                                                                         >  2:3558853/1‑128 (MQ=255)
                                         aTTAATAATAAATTTACAAACCAAAATTACATTTAAAATAAAATAAAAATTTATAAATTTATATTTTTTTAATAAAAATATTAAAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAat                                                                                         <  2:3475187/128‑1 (MQ=255)
                                          ttAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACTT‑TTTTTTTTTTTTTTTGTAAATAAAATATAATTTTAACAat                                                                                         >  1:5829020/1‑128 (MQ=255)
                                           taataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTATCTAAAATATAATTTTACAAattat                                                                                      >  2:5817067/1‑128 (MQ=255)
                                            aataataaATTTACAAACCAAATTCCCCATTAAAATAAAATAACATTATATAAATATAAATTTTTTAAATAAAAAAATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattatt                                                                                     <  1:179667/128‑1 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGATAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAGCTAACATATATTTTTACCAattttttg                                                                                   >  2:2550696/1‑126 (MQ=255)
                                             ataataaCTGTACAAACAAAATTACATTTTTAATTTAAATAAAATTATTTTAATTTTAATTTTTTAAATAAAAATTTTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                    <  2:3882293/128‑1 (MQ=255)
                                             ataataaATGTAAAAAACAAATTACAATTTTAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                    <  2:228404/128‑1 (MQ=255)
                                             aaaataaATGTACAAACCAAAATACACTTTAAATTAAAATAACATTATATAAAGTTAAATTTTTTAAATAAAAATATTTCAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                    <  2:6041855/126‑1 (MQ=255)
                                               aattaatttaaaaCACAAATTCCACTTTAAATTAAAAAAAAATTTTATAAATATAAATTTTTTAAATAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                  <  2:5140547/117‑1 (MQ=255)
                                               aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTATTTTTTTTTGGAACTAACATATAATTTTACCaataataat                                                                                   >  1:4385280/1‑125 (MQ=255)
                                                aaaaatGTACAACCCAAATTCCCCTTTAAATTTAAATAACATTATATAAATTAAAATTTTTTAAAAAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaa                                                                                 <  2:5746555/123‑1 (MQ=255)
                                                   aatttacaaaaaaaaTTTCCATTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAGCATATAATTTTACCAATTATTAGaattt                                                                              <  2:1201346/116‑1 (MQ=255)
                                                   aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTTGaattta                                                                             >  1:802732/1‑127 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTATaatttaa                                                                            >  2:6362051/1‑126 (MQ=255)
                                                         aaaaccAAATTATACTTTAAATTAAAATAAAATTTTATAAATTTAAATTTTTTAAATAAAAATTTTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                                        <  1:351501/124‑1 (MQ=255)
                                                          aaCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTAaaatttaaattta                                                                       >  2:1793842/1‑127 (MQ=255)
                                                             ccAAATTCCCCTTTAAATTAAAATAACTTTTTATAAAGATAAATTTTTTAAAGTAAAATATTTAAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAg                                                                   <  2:1700549/128‑1 (MQ=255)
                                                             aaaatatacaatttAAATTAAAATAAAATAATTTAAATAAAAATTTTTATAATTAAAATTTTAAAAC‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcac                                                                     <  2:4142723/117‑1 (MQ=255)
                                                               aattaaccttttAAATT‑AAATAAAATTATATAATTATAAATTTTTTAAATAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                 <  2:1457818/119‑1 (MQ=255)
                                                               aaaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTATAATTTAAATTTCAAAGa                                                                  >  1:1428532/1‑128 (MQ=255)
                                                                 attaaaatttAAAATAAAATAAAATTATAAAAATATAAATTTTTTAAATAAAAATATTACAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                 <  2:2420749/121‑1 (MQ=255)
                                                                     cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTGTAACTAAAATATAATTTTACAAATTATTAAaatttcaatttaaaaaattaat                                                             >  2:2806375/1‑117 (MQ=255)
                                                                     cacTTTAAATTAAAAAAAAATTAAATAAATATAAATTTTTTAAATAAAAAAATTACAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAtt                                                            <  1:1704152/126‑1 (MQ=255)
                                                                      ccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTAAAATTTCAATTTctcatcggaagatc                                                          >  1:3323942/1‑118 (MQ=255)
                                                                       cTTTAAATTCAAAAAAAATTATATAAATATATATTTTTTAAATAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGa                                                          <  2:71355/128‑1 (MQ=255)
                                                                         ttaaatttaaatAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                                         <  2:2166124/128‑1 (MQ=255)
                                                                         ttAAAATAAAATAAAATTATATAAATAAAAATTTTTTAAATTAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                        <  1:3242968/128‑1 (MQ=255)
                                                                          tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTT‑TAAAAAAAATAAAATTTTACAAAATATTATAATTTAAATTTAAAATATTAATTTAtta                                                       >  2:528230/1‑127 (MQ=255)
                                                                          tAAATTAAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTACAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                       <  1:4111583/128‑1 (MQ=255)
                                                                          tAAATTAAAAAAAAATTATTTAAATATAAATTTTTTAAATAAAAAAATTAAAA‑‑‑‑ATTTTTTTTTTTTTCGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  2:4380873/128‑1 (MQ=255)
                                                                           taaTTTAAATAAAAATATATAAATATAAATTTTTTTAACAAAAAAATTTAAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                       <  2:3047376/127‑1 (MQ=255)
                                                                           aaaTTTAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  2:3204072/128‑1 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTAAAAATAATTATAATTTCAATTTAACAGATTAATTGAttt                                                       >  1:2042490/1‑128 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAGAATTTCATTTTCAAAGATTAAATTATttc                                                      >  1:1232170/1‑128 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACAAACATTAAATTTTACCAATTATTAGAATTTAAATTTCACATATTAATTGATttct                                                     >  1:5250882/1‑128 (MQ=255)
                                                                           aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAAATAACAAATAATTTTACAAATAATTATATTTACAAATTAACACTTAAATTGATttct                                                     >  2:3981746/1‑128 (MQ=255)
                                                                            aaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTTGAACTAAAATATAATTTTACCAATTATTAGAATTTAAATTTCACAGATGAATTTATttc                                                      >  2:1562274/1‑128 (MQ=255)
                                                                            aaTTAAAATAATATTATATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                     <  1:2303018/128‑1 (MQ=255)
                                                                             aTTCAAAAAACATTTTATAAATATAAATTTTTTAAATTAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                    <  1:2506866/128‑1 (MQ=255)
                                                                              ttaaaattaaattATATATATATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                                   <  1:6473616/125‑1 (MQ=255)
                                                                                cAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTTGAACTAACATTTAATTTTACAAATTATTAAAATTTAAATTTAAAATATTAATTtatttattat                                                  >  1:476518/1‑126 (MQ=255)
                                                                                  aaTAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTTTTATAATTTCAATTACACATATTAATTTATTTATACtaaa                                               >  2:1340730/1‑127 (MQ=255)
                                                                                   aataaaTTATATTAATTTAATTTTTTTTAATAAAAAAATT‑TAAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                              <  2:5395869/123‑1 (MQ=255)
                                                                                     aaaatattataATTATAAATTTTTTAATTAAAAATTTTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATAATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                                            <  2:6278775/121‑1 (MQ=255)
                                                                                     aaCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTTGAACTAACAAATAATTTTACCAATTATTAAAATTTAAAATTAAAAAATCAATTTATTTATTAaaataa                                             >  1:6373774/1‑128 (MQ=255)
                                                                                     aaCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACAAAAAATTTTACCAA‑TATTATAATTTAAATTAAAAAAATTAATTAATTTATTATAATAAtt                                           >  2:2024127/1‑128 (MQ=255)
                                                                                       cATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACTTATAATTTTACCAATTTTTAGATTTAAAATTTAACATATTAATTCATTTATTCTACTTAttt                                          >  2:2908910/1‑128 (MQ=255)
                                                                                          tatataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTT‑TAACTAAAAAATAATTTTACAAATTATTAGAATTTCAATTTAACACATAAATTGATTAATTATAATAAATTTTc                                       >  1:939803/1‑128 (MQ=255)
                                                                                           atataAATATATATTTTTTAAATAAATATATTTCAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                      <  1:3432152/128‑1 (MQ=255)
                                                                                           atataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                    >  1:1537086/1‑128 (MQ=255)
                                                                                            tataAATTTAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                    <  2:18991/128‑1 (MQ=255)
                                                                                            atatatttatttttttttAATAAAAATTATTAAAA‑‑‑‑TTTTTTTTTTTTTTTGGAACTTACATTTAATTTTACCAATTATTAGAATTTCAATTTCACAGATTAATTGATTTCTTCTAATAATTTGTCtat                                    <  2:6601395/116‑1 (MQ=255)
                                                                                             ataaatataaatTTTTTAAATAAAAATAATAAAAA‑T‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  1:2426412/128‑1 (MQ=255)
                                                                                             ataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTGGAACTAAAATAAAATTTTACCAATTATTTGAATTTCAATTTCACAAATGATTTGATTTCTTATAATAATTTGtata                                     >  2:827530/1‑128 (MQ=255)
                                                                                               aaatttAAATTTTTTAAATAAAAATAATA‑AAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatat                                  <  1:4510411/123‑1 (MQ=255)
                                                                                               aaaTATAAATTTTTTAAATAAAAATATTACAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                   <  1:112324/128‑1 (MQ=255)
                                                                                               aaaGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAAAATAATTTTACCAATTATTTGAATTTAAATTTAACATATGAATTGATTTATTCTAATAATTTGACtatat                                  >  1:5408246/1‑128 (MQ=255)
                                                                                                aaataaaaaTTTTTAAATAAAAATATTTAAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatat                                  <  1:629425/123‑1 (MQ=255)
                                                                                                aaGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACAAATAATTTTACAAATTATTAGAATTTAAATTAAAAAGATTAATTAATTTATAATAATAATTTTTCtatata                                 >  2:590919/1‑128 (MQ=255)
                                                                                                aaGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAAAAACATATAATTTTACCAATTATTAGAATTTCAATATAACAAATGAATTGATTTATTATAATAATTTTTGtatata                                 >  2:3709118/1‑128 (MQ=255)
                                                                                                  taTAAATTTTTTAAATAAAAATATTA‑AAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                               <  1:1919228/127‑1 (MQ=255)
                                                                                                  gATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTATAATTTAAATTTCACAAATTAATTGATTTATTCTAATAATTTTTatattaaga                               >  1:132378/1‑123 (MQ=255)
                                                                                                    tAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCAAAGATAAATATATTTGATATAATAATTTTAATatatatattt                            >  1:5926531/1‑126 (MQ=255)
                                                                                                     aaaTTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt                           <  1:3986365/128‑1 (MQ=255)
                                                                                                      aaTTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTTTAATTTAAATTTAACATATTAATTTATTTCTTGTAATAATTTTTGTATATATAtttt                           >  1:3008134/1‑128 (MQ=255)
                                                                                                      aaTTTTTTAAAGAAAAATATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt                           <  1:2183752/128‑1 (MQ=255)
                                                                                                          ttttAAATAAAAATATTAAAAA‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt                        <  2:5620157/128‑1 (MQ=255)
                                                                                                                  aaaaaTATTA‑AAA‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaa               <  1:6175779/128‑1 (MQ=255)
                                                                                                                    aaaTAATAAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAt             <  1:1000582/128‑1 (MQ=255)
                                                                                                                     aaTATTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTATAATTTAAATTTAAAAGATGAATTGATTCATTATAATAATTTGTATATATATATTTTTTTTATTTCTAAATc            >  1:2868507/1‑128 (MQ=255)
                                                                                                                      atatTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACAGATGAATTGATTTATTATAATAATTTTTATATATATATGTTTTTTATATCTAAAtaa           >  1:2734398/1‑126 (MQ=255)
                                                                                                                       tatTACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAg          <  1:3867989/128‑1 (MQ=255)
                                                                                                                         ttACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTTTTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTTTATATATAGATGTTTTTTATATATAAATAAGTg        >  1:313380/1‑128 (MQ=255)
                                                                                                                           tttaaat‑tttttttttttttttGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTg        <  2:4900156/122‑1 (MQ=255)
                                                                                                                            ctaC‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGAt      <  1:5022211/126‑1 (MQ=255)
                                                                                                                                tt‑tttttttttttttttttAAATAACATATAATTTTACCATTTATTAGATTTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATctt   <  2:3315252/127‑1 (MQ=255)
                                                                                                                                tt‑tttttttttttttttGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTAACAGATTAATTAATTTCTACTAATAATTTTTATATATTATTGTTTTTTAAATCAAAAACAGTAAtagt   >  2:4613035/2‑125 (MQ=255)
                                                                                                                                 |                                                                                                                                
AATTTATATATATTAGTGAACTTAAGGATGTATAATACAA‑ATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑