Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA36.1% 4545.5 / inf 2675intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (528/1116);  new base A (766/162);  total (1390/1285)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2698 total aligned reads displayed.

CTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430
                                                                                                                                     |                                                                                                                                  
   aaaaatttttCTTTTTTTATATTTTTTGTATT‑TGGAAAATTTTAAAAAATTAAATTGAAATTGTAAAAATT‑‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTaa                                                                                                                                 <  1:6458660/119‑1 (MQ=255)
    aaaatttaaattttttTATTTTTTTTTTATA‑TTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑TC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTa                                                                                                                                  <  2:5128758/118‑1 (MQ=255)
    aaaatatatTTTTTTATTTATTTTTTTTTTA‑TTTAAATTTTTAAAAAATTAAATTTTAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTa                                                                                                                                  <  2:1379237/122‑1 (MQ=255)
      attttatTTTTTTATATTTTTTTTTTATATTTAAAATTTTTAAAAAATTATTTTTAAATT‑TTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAg                                                                                                                                <  1:3710205/125‑1 (MQ=255)
       ttttatCTTTTTTGATATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAt                                                                                                                             <  2:5391603/126‑1 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTATAATGAAAATATAA‑ATTTTATTTATTTTTTTTTATaat                                                                                                                                >  2:5821399/1‑127 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAA‑ATTTTAGGTATTTTTTTTTCTaata                                                                                                                               >  1:1390824/1‑126 (MQ=255)
        attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTAAAATGTAATAATAA‑ATTTTTTTTATTTTTTTTTATAATTa                                                                                                                              >  1:6155432/1‑128 (MQ=255)
        attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAA‑ATTTTAGTTTTTTTTTTTTATAATTaa                                                                                                                             >  2:6118777/1‑127 (MQ=255)
            tatttttATATATTTTTTTTATT‑TTAAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAATA‑‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑aa                                                                                                                       <  1:4396495/126‑1 (MQ=255)
             cTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTAAAATGAAAAAATAA‑ATTATAGTTATTTTTTTGTATAATtaa‑at‑aaa                                                                                                                      >  1:2240607/1‑128 (MQ=255)
              tttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAA‑ATTTAAGGTATTTTTTTTTATAAGTAT‑AT‑aaaa                                                                                                                     >  1:4522270/1‑128 (MQ=255)
               ttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATTATGTAAAAATAA‑ATTTTAGTTATTTTTTTTTATATGTAT‑CT‑aaaa                                                                                                                     >  2:3719212/1‑128 (MQ=255)
               ttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAA‑ATTTTAGGTATTTTGTTGTATAAGTAT‑AT‑aaaaa                                                                                                                    >  1:5276272/1‑128 (MQ=255)
                tttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATTTAAAAATAA‑ATTTTATTTATTTTTTTTTCTAATTAA‑AT‑aaaaa                                                                                                                    >  1:4695521/1‑128 (MQ=255)
                 tttattatTTTTTTTATA‑TTTAATTTTTTAAAAAATTAATTTTTACTTTTAAAAAAAA‑G‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑aaaaaaa                                                                                                                  <  2:842454/123‑1 (MQ=255)
                  tAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATTTAAAATAAA‑ATTTTATGTATTTTTTTTTCTAATTTT‑Aa‑aaaaaaa                                                                                                                  >  1:3323706/1‑128 (MQ=255)
                    ttttttttttttttt‑tGTAATTTTTTTAAAAATTTATTTGTAATTGTTAAAAAT‑‑‑TTGTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAg                                                                                                               <  1:391618/124‑1 (MQ=255)
                     ttatTTTTTGTATA‑AGAAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGa                                                                                                              <  1:5153716/127‑1 (MQ=255)
                     atatTTTTTGTTTA‑TGAAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAA‑A‑TTGTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAg                                                                                                               <  1:5783209/128‑1 (MQ=255)
                     atatTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTCTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGa                                                                                                              <  1:6561270/128‑1 (MQ=255)
                      ttttttttttATA‑TTAAAAATTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGaa                                                                                                             <  2:6619517/126‑1 (MQ=255)
                       tttttttttATA‑TTAAATTTTTTAAAAAAATAATTTTAAATTTTAAAAAATT‑TGTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGa                                                                                                              <  1:1146221/127‑1 (MQ=255)
                       atTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GATTTTTTTTTTTTTTTTTTTATTATTTAAAAAAAATATTTTA‑TTATTTTTTTGTATATATAT‑AT‑aaaaaaaataa                                                                                                              >  2:6419511/1‑124 (MQ=255)
                        ttttttGTTTA‑TTCAAATTTTTTATAAATTAATTTTTAATTGTAAAAAATA‑TC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGaaa                                                                                                            <  1:6044847/128‑1 (MQ=255)
                          ttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TATTGTAAATATAA‑ATTTT‑TGTATTTTTTTTTATTAATATATT‑AAAAAAATAAAAAgt                                                                                                          >  1:1002750/1‑127 (MQ=255)
                           ttttttttttttaaaTTTTTAAAAAATTAATTTTAAATTTTAAAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAg                                                                                                           <  1:1833099/116‑1 (MQ=255)
                           ttttTATA‑TTTAAATTTTTTAAAAATTAATTTTTACTTGTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGaa                                                                                                        <  1:878605/128‑1 (MQ=255)
                            ttttata‑TTTAAATTTTTATAAAATTTATTTTAAATTTTATATAATT‑GCG‑‑TTTTTTTTTTTTTTTTATATTTGAAATATTA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AATAAAATAGAAAGGaaa                                                                                                       <  2:6028647/125‑1 (MQ=255)
                            ttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAA‑ATTTTAGGTATTTTGTTTTCTAATTAT‑AT‑AAAAAAATATAAAGTaa                                                                                                        >  1:2359956/1‑128 (MQ=255)
                            ttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGaa                                                                                                        <  1:5860598/128‑1 (MQ=255)
                               gtttatttaaaTTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGTAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGaaaaa                                                                                                     <  1:1264674/120‑1 (MQ=255)
                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TAATTTAAATATAA‑ATTTTAGGTATTTTTTTGTATAAGTAT‑AT‑AAAAAAATATAAAGTAAAAA‑atat                                                                                                >  1:2452583/1‑128 (MQ=255)
                                     gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAA‑ATTTTAGTTATTTTGTTTTATAATTAT‑AT‑AAAAAAATATAAATTAAAAA‑ATAtt                                                                                               >  1:2677993/1‑128 (MQ=255)
                                         aTTTTTTAAAAATTTATTTTTAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTa                                                                                           <  2:2974616/128‑1 (MQ=255)
                                          ttttttaaaaatttattTTTAATTTTAAAAAATA‑‑TATTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAAATAGAAAGGAAAAA‑ATATTGTTa                                                                                           <  1:2032402/119‑1 (MQ=255)
                                          ttttTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAA‑ATTTTAGTTATTTTGTTTTATAATTTT‑AT‑AAAAAAATATAAATGAAAAA‑ATATTTTTaa                                                                                          >  1:2798952/1‑128 (MQ=255)
                                          ttttAAAA‑AATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTT‑‑TAATTAAAATAAAA‑ATAAATTTTATTTTTTTTTTTATTTAA‑AT‑AAAAAAAAAAAAAAAAAAAA‑ATATTTTTaaat                                                                                        >  2:6199319/1‑127 (MQ=255)
                                             ttaaaaaaTTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TATTGTAAATAAAA‑ATTTTAGTTATTTTTTTTTATATGTTT‑CT‑AAAAAATAAGAAATTAAAAT‑ATATTATTaaaat                                                                                       >  1:4885520/3‑127 (MQ=255)
                                                aaaaattaattTTAAATTTTTAAAAATT‑TTATTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTa                                                                                     <  2:1928765/125‑1 (MQ=255)
                                                 ataatttattTTAAATTTTAAAAAATATTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTa                                                                                     <  1:683088/126‑1 (MQ=255)
                                                  aaattaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTATATTGTAAATAAAA‑ATTTTATGTTTTTTGTTTTATATTTAT‑AT‑AAAAAAATATAAAGAAAAAA‑ATATTGTTAAAATTatt                                                                                   >  1:5942493/2‑126 (MQ=255)
                                                  aaattaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTA‑AATGTAAATATAA‑TTTTTTGTTTTTTTTTTGTATAATTAT‑‑A‑AAAAAAATAAAAATTAAAAATATTTTTTTaaattaaaaa                                                                                  >  2:6525640/2‑121 (MQ=255)
                                                   aattaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATGTAAATTTAA‑ATTTTTGTTATTTTTTTGTATAATTAT‑AT‑AAAAAAATATAAAGTAAAAA‑AATTTTTTAAAAGTAATaa                                                                                 >  2:2269667/1‑127 (MQ=255)
                                                   aattaaatTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATAc                                                                                 <  1:6350959/128‑1 (MQ=255)
                                                    attaattTGAACTTGTAAAGAATA‑GC‑TTTTTTTTTTTTTTTTTTATATTGGAAATATAA‑ATTTTAGGTTTTTTGTTGTATAATTAT‑AT‑AAAAAAAAAAAAAGGAAAAA‑ATATTTTTAAAATTAATaat                                                                                >  2:3473029/1‑126 (MQ=255)
                                                    attaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTTTATAATTAT‑AT‑AAAAAAATAGATAGTAAAAA‑ATATTGTTAAAAttattaa                                                                                 >  1:3472857/1‑127 (MQ=255)
                                                    attaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAA‑ATTTTAGGTATTTTGTTTTATAAGTAT‑AT‑AAAAAAATATAAATGAAAAA‑ATTTTTTTAAATTTAATaat                                                                                >  2:5573262/1‑126 (MQ=255)
                                                    attaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTT‑‑TAATGGAAATATAA‑ATTTTATGTATTTTGTTTTCTAAGTAT‑CT‑AAAAAAATATAAAGTAAAAA‑ATATTTTTAAAATTAATACTa                                                                               >  2:1800735/1‑128 (MQ=255)
                                                    attaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTATGTATTTTTTTTTATATTTAT‑AT‑AAAAAAATTAAAAGTAAAAA‑ATTTTTTTAAATGTataaat                                                                                >  1:4061463/1‑123 (MQ=255)
                                                     ttaattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTAAAAATAAAAAAAAA‑ATTTTATTTTTTTTTTTTAATAATAAA‑AA‑AAAAAAAAAAAAATTAAAAA‑ATATT‑TTAAAATTaaaaaaa                                                                               >  2:2505991/1‑123 (MQ=255)
                                                     ttaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAA‑ATTTTAGGTTTTTTTTTGTATAATTAT‑AT‑AAAAAAAAATAAAGGAAAAA‑ATATTTTTAAAACTTATACaaa                                                                              >  2:1028323/1‑128 (MQ=255)
                                                      taattTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTA‑AATGAAAAAATAA‑AATTTATTTATTTTTTTTTAAAATAAA‑AA‑AAAAAAAAAAAAAAAAAAAA‑AAATTTTTaaatataaaaaaaa                                                                              >  2:285805/1‑117 (MQ=255)
                                                       aattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTA‑AATGAAATAATAA‑TTTTTAGGTATTTTGTTTGCAAATTAT‑CT‑AAAAAAATAGAAAGAAAAAA‑ATATTATAAAAATTATAAATAAAat                                                                           >  2:4774894/1‑128 (MQ=255)
                                                        attTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTATATTGGAAATATAA‑ATTTTAGTTATTTTTTTTTATAATTAT‑AT‑AAAAAAATAGAAAGGTAAAA‑ATTTTTTTAAAATTATTACTaaaa                                                                            >  1:3056460/1‑128 (MQ=255)
                                                                    ttttaaaaatttttttttttttttttttttATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATg                                                                  <  2:3118513/117‑1 (MQ=255)
                                                                      ttaaatttttttttttttttttttttttATAATTGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGtt                                                                <  2:4503311/119‑1 (MQ=255)
                                                                        aaTA‑GC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATATAAATGAAAAA‑ATATTTTTAAAAATAATAATAAAATTATTTATTGttaata                                                            >  2:5927622/1‑127 (MQ=255)
                                                                         aaaaatattttttttttttttttttATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat                                                             <  2:2368992/121‑1 (MQ=255)
                                                                         aTA‑GC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAA‑ATTTTAGGTATTTTGTTGTATAAGTAA‑AT‑AAAAAAATAGAAACGAAAAA‑ATATTGTTAAAAGTAAAACAAAAATTATTTAATTtaaatta                                                           >  2:495085/1‑128 (MQ=255)
                                                                          ttttttttttttttttttttttttATAATGTAAATATAA‑ATTTTATGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt                                                            <  1:3187652/123‑1 (MQ=255)
                                                                          tA‑GCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAA‑ATTTTATTTTTTTTTTTGTATAATTAT‑AT‑AAAAAAAAATAAATTAAAAA‑ATATTTTTAAAATTAAAAATAAAATTATTTAATTttatttaa                                                          >  2:5712918/1‑128 (MQ=255)
                                                                           attttttttttttttttttttttATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  2:4650575/124‑1 (MQ=255)
                                                                           atttattttttttttttttttttATAATGGAATTATAA‑ATTTTATTTATTTTGTTGTCTAATTAT‑CT‑AAAAAAATAGAAATTAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:1603335/123‑1 (MQ=255)
                                                                                  ttttttttttttttttttATTTGAAAAAAAA‑ATTTTTAGTATTTTTTTTTAAAATTAA‑AA‑AAAAAAAAAAAAAATAAAAA‑ATTTTTTTAAAATAAAAAAAAAAATTATTTAATTTTAATTaaaaaata                                                    >  2:2756598/1‑124 (MQ=255)
                                                                                   tttttttttttttttATAATTGAAATATAA‑ATTTTATTTATTTTGTTTTATAATTAT‑AT‑AAAAAAATAGAAATTAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaa                                                   <  1:2920744/128‑1 (MQ=255)
                                                                                   tttttttttttttttATAATGGAAATATAA‑ATTTTTGTTATTTTTTTGTCTAAGTAA‑AA‑AAAAAAATATAAAGGAAAAA‑ATATTTTTAAAATTAAAAATAAAATTATTAAATGTTAATTAAAAATtaa                                                   >  2:3588357/1‑128 (MQ=255)
                                                                                   tttttttttttttttATAATGGAAATATAA‑ATTTTAGGTTTTTTTTTGTCTAAGTAT‑AT‑AAAAAAATATAAATTAAAAA‑ATTTTTTTAAAAGTAATAATAAAATTATTTAATTTTAATTAAAAATtaa                                                   >  1:5678635/1‑128 (MQ=255)
                                                                                     tttttttttttttATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTATAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaat                                                 <  1:5017796/128‑1 (MQ=255)
                                                                                       tttttttttttATAATGGAAATATAA‑ATTTTAGGTATTTTGTTTTATAAGTAA‑AT‑AAAAAAATATAAATGAAAAA‑AAATTTTTAAAAGTAAAAAAAAAAAAATATAATTTTAATAAAAACTtaaataa                                               >  2:63074/1‑128 (MQ=255)
                                                                                        ttttttttttATTATGGAAATATAA‑ATTTTATGTATTTTGTTGTCTAAGTAT‑CT‑ATAAAAATAGATATGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataaa                                              <  2:4309666/128‑1 (MQ=255)
                                                                                                  ataATTGAAATATAA‑ATTTTAGGTATTTTGTTGTATAAGTAT‑AT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAtt                                    <  2:1223986/128‑1 (MQ=255)
                                                                                                  ataATGGAAATATAA‑ATTTTAGGTATTTTGTTGTATAAGTAT‑CT‑AAAAAAATAGAAATGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAtt                                    <  2:3907870/128‑1 (MQ=255)
                                                                                                    aaTGTAAATATAA‑ATTTTATGTATTTTGTTGTCTAAGTAT‑AT‑AAAAAAATAGAAAGTAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaa                                  <  1:76066/128‑1 (MQ=255)
                                                                                                     aTGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                 <  2:325408/128‑1 (MQ=255)
                                                                                                        taaaTATAA‑ATTTTAGTTATTTTGTTGTATAAGTAT‑AT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:1934709/127‑1 (MQ=255)
                                                                                                            tataA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTTATTAAAAATTAAATAATACATAAAATGAATAAAAATa                          >  2:2624024/1‑128 (MQ=255)
                                                                                                             ataA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAATACATAAAATTAATAAAAATAg                         >  1:5361730/1‑128 (MQ=255)
                                                                                                              taA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  1:6245770/1‑128 (MQ=255)
                                                                                                                  aatttATGTATTTTTTTTTCTTATTAT‑TT‑AAAAAAATATTAATGTAAAA‑ATATTTTTAAAATTAATTATAAAATTATTTAATTTTAAATTAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     <  1:5449897/126‑1 (MQ=255)
                                                                                                                  aTTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTTTTAAAATTAATACTAAATTTATTTAATTTTATTTAAAAATTAAATAAAAAATAAAATTATTAAAAATATTtta                     >  1:555038/1‑128 (MQ=255)
                                                                                                                  aTTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     <  2:5042819/128‑1 (MQ=255)
                                                                                                                      tAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:1484436/1‑128 (MQ=255)
                                                                                                                      tAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  1:1678779/1‑128 (MQ=255)
                                                                                                                      tAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:5472861/1‑128 (MQ=255)
                                                                                                                       aGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaaa                <  1:1505562/128‑1 (MQ=255)
                                                                                                                        tgTATTTTGTTTTATAAGTAT‑AT‑ATAAAAATAGAAATTAAAAA‑ATATTTTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc               <  1:2141250/127‑1 (MQ=255)
                                                                                                                         gTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACt              >  2:1671658/1‑128 (MQ=255)
                                                                                                                          tATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTa             <  2:740801/128‑1 (MQ=255)
                                                                                                                            ttttGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTATAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           >  2:3379068/1‑128 (MQ=255)
                                                                                                                            ttttGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  2:4151604/120‑1 (MQ=255)
                                                                                                                             tttGTTGTCTAAGTAT‑CT‑AAAAAAATAGTAATGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          <  2:5306045/128‑1 (MQ=255)
                                                                                                                             tttGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          <  2:2046619/128‑1 (MQ=255)
                                                                                                                             tttGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          <  1:4206599/128‑1 (MQ=255)
                                                                                                                              ttgttgTCTAAGTAT‑AT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  1:255545/128‑1 (MQ=255)
                                                                                                                               tgttgtCTAAGTAT‑CT‑AAAAAAATAGAAAGGAATAA‑ATATTGTTAATAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  2:1593745/128‑1 (MQ=255)
                                                                                                                               tgttgtCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        >  2:5231939/1‑128 (MQ=255)
                                                                                                                               tgttgtCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        >  2:403607/1‑128 (MQ=255)
                                                                                                                                 ttgtATAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:3588357/128‑1 (MQ=255)
                                                                                                                                  tgtCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGtt     >  2:2145131/1‑128 (MQ=255)
                                                                                                                                     |                                                                                                                                  
CTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAA‑ATTTTAGGTATTTTGTTGTCTAAGTAT‑CT‑AAAAAAATAGAAAGGAAAAA‑ATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑